Wall clock time and date at job start Wed Apr 1 2020 00:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47052 * 2 1 4 4 H 1.09004 * 109.47280 * 305.07779 * 3 2 1 5 5 O 1.42899 * 109.47162 * 65.07384 * 3 2 1 6 6 C 1.42904 * 114.00220 * 259.09037 * 5 3 2 7 7 C 1.50702 * 109.47299 * 185.07477 * 3 2 1 8 8 O 1.21285 * 119.99953 * 245.00328 * 7 3 2 9 9 N 1.34774 * 120.00171 * 64.99590 * 7 3 2 10 10 C 1.46497 * 120.00160 * 179.97438 * 9 7 3 11 11 H 1.09006 * 110.66653 * 32.05911 * 10 9 7 12 12 C 1.54835 * 110.61546 * 269.10345 * 10 9 7 13 13 C 1.55847 * 103.51656 * 241.49173 * 12 10 9 14 14 H 1.09000 * 116.14981 * 159.22865 * 13 12 10 15 15 C 1.57340 * 105.76358 * 288.80009 * 13 12 10 16 16 C 1.54836 * 103.38373 * 71.10768 * 15 13 12 17 17 C 1.55842 * 103.51949 * 0.40301 * 16 15 13 18 18 H 1.09005 * 115.58322 * 158.88835 * 17 16 15 19 19 N 1.50646 * 101.03289 * 32.99118 * 17 16 15 20 20 C 1.46900 * 110.99898 * 61.62927 * 19 17 16 21 21 C 1.50697 * 109.47408 * 170.00433 * 20 19 17 22 22 O 1.21294 * 119.99963 * 0.02562 * 21 20 19 23 23 N 1.34777 * 120.00551 * 180.02562 * 21 20 19 24 24 C 1.37089 * 120.00506 * 179.97438 * 23 21 20 25 25 H 1.07999 * 120.00109 * 0.27174 * 24 23 21 26 26 C 1.38955 * 120.00379 * 179.97438 * 24 23 21 27 27 N 1.31411 * 119.99740 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00068 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47426 * 60.00287 * 28 26 24 30 30 H 1.48505 * 109.46886 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47010 * 299.99507 * 28 26 24 32 32 H 1.08999 * 109.46978 * 294.23534 * 1 2 3 33 33 H 1.09004 * 109.47193 * 54.23687 * 1 2 3 34 34 H 1.08999 * 109.47118 * 174.23281 * 1 2 3 35 35 H 1.09001 * 109.47128 * 239.99964 * 2 1 3 36 36 H 1.09003 * 109.47156 * 119.99759 * 2 1 3 37 37 H 1.08997 * 109.47181 * 185.66485 * 6 5 3 38 38 H 1.09011 * 109.46487 * 305.65848 * 6 5 3 39 39 H 1.08996 * 109.47213 * 65.65695 * 6 5 3 40 40 H 0.97005 * 119.99933 * 0.02562 * 9 7 3 41 41 H 1.09001 * 110.61210 * 122.98636 * 12 10 9 42 42 H 1.08995 * 110.74504 * 0.06717 * 12 10 9 43 43 H 1.09002 * 110.33149 * 312.80488 * 15 13 12 44 44 H 1.08991 * 111.15141 * 189.80113 * 15 13 12 45 45 H 1.09003 * 110.61407 * 241.89160 * 16 15 13 46 46 H 1.09001 * 110.74262 * 118.97160 * 16 15 13 47 47 H 1.09001 * 109.47276 * 50.00376 * 20 19 17 48 48 H 1.08998 * 109.47120 * 290.00252 * 20 19 17 49 49 H 0.97002 * 119.99353 * 359.97438 * 23 21 20 50 50 H 0.97001 * 120.00176 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9820 -0.8410 5 8 1.6634 2.0809 1.2218 6 6 0.5246 2.9361 1.1038 7 6 3.5418 1.4445 -0.1257 8 8 4.2260 1.8608 0.7851 9 7 4.1245 0.9834 -1.2501 10 6 5.5844 0.9858 -1.3724 11 1 6.0522 0.8316 -0.4000 12 6 6.0758 2.3083 -2.0103 13 6 6.7745 1.8419 -3.3230 14 1 6.8892 2.5971 -4.1006 15 6 8.1018 1.1284 -2.8705 16 6 7.6000 -0.1881 -2.2283 17 6 6.0519 -0.1029 -2.3850 18 1 5.5205 -1.0533 -2.3329 19 7 5.9346 0.6454 -3.6872 20 6 6.5467 -0.1124 -4.7867 21 6 6.1996 0.5395 -6.1004 22 8 5.5105 1.5375 -6.1188 23 7 6.6548 0.0136 -7.2548 24 6 6.3387 0.6063 -8.4498 25 1 5.7284 1.4972 -8.4660 26 6 6.8084 0.0644 -9.6400 27 7 7.5562 -1.0160 -9.6200 28 14 6.3781 0.8725 -11.2682 29 1 6.8924 2.2655 -11.2808 30 1 6.9974 0.1068 -12.3798 31 1 4.9030 0.8878 -11.4387 32 1 -0.3633 0.4218 0.9371 33 1 -0.3634 0.6006 -0.8339 34 1 -0.3633 -1.0225 -0.1033 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 0.3639 3.4592 2.0465 38 1 0.6968 3.6629 0.3098 39 1 -0.3552 2.3387 0.8651 40 1 3.5773 0.6506 -1.9786 41 1 6.7873 2.8096 -1.3542 42 1 5.2349 2.9642 -2.2353 43 1 8.6278 1.7378 -2.1357 44 1 8.7458 0.9178 -3.7242 45 1 7.8774 -0.2313 -1.1750 46 1 7.9929 -1.0528 -2.7631 47 1 6.1692 -1.1349 -4.7776 48 1 7.6294 -0.1236 -4.6617 49 1 7.2062 -0.7843 -7.2400 50 1 7.8845 -1.3941 -10.4507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110368899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:49 Heat of formation + Delta-G solvation = -90.787345 kcal Electronic energy + Delta-G solvation = -30517.920112 eV Core-core repulsion = 26352.906586 eV Total energy + Delta-G solvation = -4165.013526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08013 -39.83768 -37.97660 -37.61819 -34.61506 -33.90656 -33.49999 -31.47540 -30.98321 -29.95169 -29.30758 -28.23460 -26.52625 -25.76171 -24.14810 -22.79354 -21.89531 -20.50637 -20.31035 -19.71488 -18.93313 -17.86014 -17.55609 -17.27166 -16.38779 -16.31587 -15.75884 -15.56874 -15.17497 -14.71804 -14.57321 -14.45743 -14.31010 -14.03075 -13.73095 -13.60837 -13.36923 -12.91143 -12.83815 -12.38017 -12.30926 -12.20545 -12.02757 -11.96728 -11.73133 -11.68397 -11.52542 -11.36652 -11.23154 -11.13950 -11.11681 -10.87097 -10.70073 -10.45035 -10.40067 -10.21593 -10.21203 -9.48733 -9.46201 -9.10128 -8.57953 -8.08832 -7.95527 -6.41550 -3.82231 2.52849 2.77471 3.19310 3.24922 3.29071 3.71396 3.87719 3.94609 4.20268 4.38376 4.45890 4.52076 4.66198 4.67693 4.78410 4.90465 4.99318 5.05046 5.07229 5.13241 5.18959 5.21064 5.27119 5.29192 5.33173 5.35649 5.40159 5.46032 5.55036 5.60199 5.70507 5.72093 5.75137 5.83589 5.88675 5.91499 6.04768 6.06630 6.23754 6.27126 6.34593 6.48629 6.75217 6.83040 7.14528 7.49517 7.54752 8.06440 8.17952 8.62772 9.18805 9.55640 10.08080 10.76288 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.002489 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.288008 B =11244.972616 C =12281.851619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.137 4.137 3 C 0.072 3.928 4 H 0.089 0.911 5 O -0.358 6.358 6 C 0.024 3.976 7 C 0.510 3.490 8 O -0.527 6.527 9 N -0.711 5.711 10 C 0.155 3.845 11 H 0.095 0.905 12 C -0.122 4.122 13 C 0.058 3.942 14 H 0.121 0.879 15 C -0.160 4.160 16 C -0.149 4.149 17 C 0.033 3.967 18 H 0.116 0.884 19 N -0.465 5.465 20 C 0.023 3.977 21 C 0.447 3.553 22 O -0.578 6.578 23 N -0.567 5.567 24 C -0.298 4.298 25 H 0.101 0.899 26 C 0.022 3.978 27 N -0.903 5.903 28 Si 0.929 3.071 29 H -0.274 1.274 30 H -0.285 1.285 31 H -0.274 1.274 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.407 0.593 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.073 0.927 47 H 0.085 0.915 48 H 0.062 0.938 49 H 0.391 0.609 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.553 -0.119 18.837 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.175 4.175 3 C 0.010 3.990 4 H 0.107 0.893 5 O -0.275 6.275 6 C -0.072 4.072 7 C 0.295 3.705 8 O -0.402 6.402 9 N -0.364 5.364 10 C 0.050 3.950 11 H 0.113 0.887 12 C -0.161 4.161 13 C -0.051 4.051 14 H 0.138 0.862 15 C -0.198 4.198 16 C -0.188 4.188 17 C -0.076 4.076 18 H 0.134 0.866 19 N -0.187 5.187 20 C -0.109 4.109 21 C 0.232 3.768 22 O -0.461 6.461 23 N -0.204 5.204 24 C -0.427 4.427 25 H 0.119 0.881 26 C -0.180 4.180 27 N -0.545 5.545 28 Si 0.757 3.243 29 H -0.200 1.200 30 H -0.210 1.210 31 H -0.199 1.199 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.106 0.894 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.242 0.758 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.103 0.897 48 H 0.080 0.920 49 H 0.224 0.776 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.960 0.853 19.285 20.880 hybrid contribution 0.682 -0.541 -1.390 1.640 sum -7.278 0.312 17.895 19.320 Atomic orbital electron populations 1.21843 0.94815 1.02394 1.02072 1.21946 0.97138 0.94721 1.03685 1.22069 0.92265 0.95386 0.89233 0.89310 1.88018 1.47760 1.62057 1.29675 1.23016 0.88136 0.93320 1.02776 1.20552 0.89931 0.77688 0.82354 1.90702 1.64845 1.45455 1.39220 1.45928 1.07717 1.64653 1.18083 1.22024 0.79669 0.95033 0.98268 0.88703 1.23019 1.00635 0.96861 0.95562 1.24737 0.89648 0.94458 0.96217 0.86155 1.23601 0.99072 0.96511 1.00662 1.23200 0.95779 0.98338 1.01522 1.24781 0.95085 0.96885 0.90870 0.86595 1.67423 1.46050 1.04231 1.01008 1.22141 0.98733 0.97999 0.92032 1.19730 0.85293 0.87221 0.84552 1.90515 1.41512 1.27135 1.86934 1.41859 1.46489 1.27202 1.04887 1.19624 1.30196 1.10508 0.82413 0.88074 1.25241 0.96693 0.96322 0.99705 1.69601 1.35003 1.21123 1.28766 0.85939 0.78793 0.78948 0.80661 1.19966 1.21007 1.19924 0.92089 0.92504 0.91997 0.90201 0.90417 0.89369 0.93762 0.93441 0.75803 0.90896 0.90512 0.91041 0.90919 0.90974 0.90824 0.89705 0.91965 0.77599 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.86 37.16 0.33 -0.69 16 2 C -0.14 -1.09 5.61 -26.73 -0.15 -1.24 16 3 C 0.07 0.72 2.68 -27.88 -0.07 0.65 16 4 H 0.09 0.74 7.60 -51.93 -0.39 0.35 16 5 O -0.36 -4.13 9.67 -55.09 -0.53 -4.66 16 6 C 0.02 0.19 10.48 101.05 1.06 1.25 16 7 C 0.51 6.46 7.18 -10.99 -0.08 6.38 16 8 O -0.53 -8.81 16.16 -14.31 -0.23 -9.04 16 9 N -0.71 -7.98 4.97 -51.40 -0.26 -8.23 16 10 C 0.16 1.84 2.81 -65.44 -0.18 1.66 16 11 H 0.10 1.17 7.27 -51.93 -0.38 0.80 16 12 C -0.12 -1.58 6.24 -24.24 -0.15 -1.73 16 13 C 0.06 0.84 4.61 -61.72 -0.28 0.55 16 14 H 0.12 2.05 7.95 -51.93 -0.41 1.63 16 15 C -0.16 -1.92 5.69 -23.40 -0.13 -2.05 16 16 C -0.15 -1.58 5.65 -24.25 -0.14 -1.72 16 17 C 0.03 0.38 4.47 -62.56 -0.28 0.10 16 18 H 0.12 1.18 8.14 -51.93 -0.42 0.76 16 19 N -0.46 -7.02 5.09 -206.06 -1.05 -8.07 16 20 C 0.02 0.38 4.80 -4.98 -0.02 0.36 16 21 C 0.45 10.22 7.72 -10.99 -0.08 10.13 16 22 O -0.58 -15.23 15.58 5.55 0.09 -15.15 16 23 N -0.57 -14.09 5.29 -10.97 -0.06 -14.14 16 24 C -0.30 -8.19 9.68 -14.94 -0.14 -8.34 16 25 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 26 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 27 N -0.90 -24.35 13.05 55.50 0.72 -23.63 16 28 Si 0.93 20.90 29.55 -169.99 -5.02 15.88 16 29 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 30 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 31 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 32 H 0.06 0.41 6.58 -51.93 -0.34 0.07 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.55 7.77 -51.93 -0.40 0.15 16 36 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.04 0.32 7.99 -51.92 -0.41 -0.10 16 39 H 0.05 0.29 6.00 -51.93 -0.31 -0.02 16 40 H 0.41 4.10 8.36 -40.82 -0.34 3.75 16 41 H 0.07 0.88 7.89 -51.93 -0.41 0.47 16 42 H 0.08 1.09 7.98 -51.93 -0.41 0.68 16 43 H 0.07 0.77 7.89 -51.93 -0.41 0.36 16 44 H 0.07 0.93 6.91 -51.93 -0.36 0.57 16 45 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 46 H 0.07 0.76 7.63 -51.93 -0.40 0.36 16 47 H 0.08 1.29 8.09 -51.93 -0.42 0.87 16 48 H 0.06 0.96 5.02 -51.93 -0.26 0.70 16 49 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.62 16 LS Contribution 395.53 15.07 5.96 5.96 Total: -1.00 -33.65 395.53 -8.83 -42.48 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -8.02 Total: 12.80 kcal Atomic # 6 Polarization: 6.23 SS G_CDS: -0.43 Total: 5.80 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.64 Total: -54.07 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.68 Total: -28.85 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.65 -8.83 -42.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110368899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.307 kcal (2) G-P(sol) polarization free energy of solvation -33.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds