Wall clock time and date at job start Wed Apr 1 2020 00:12:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47052 * 2 1 4 4 H 1.09004 * 109.47280 * 305.07779 * 3 2 1 5 5 O 1.42899 * 109.47162 * 65.07384 * 3 2 1 6 6 C 1.42904 * 114.00220 * 259.09037 * 5 3 2 7 7 C 1.50702 * 109.47299 * 185.07477 * 3 2 1 8 8 O 1.21285 * 119.99953 * 245.00328 * 7 3 2 9 9 N 1.34774 * 120.00171 * 64.99590 * 7 3 2 10 10 C 1.46497 * 120.00160 * 179.97438 * 9 7 3 11 11 H 1.09006 * 110.66653 * 32.05911 * 10 9 7 12 12 C 1.54835 * 110.61546 * 269.10345 * 10 9 7 13 13 C 1.55847 * 103.51656 * 241.49173 * 12 10 9 14 14 H 1.09000 * 116.14981 * 159.22865 * 13 12 10 15 15 C 1.57340 * 105.76358 * 288.80009 * 13 12 10 16 16 C 1.54836 * 103.38373 * 71.10768 * 15 13 12 17 17 C 1.55842 * 103.51949 * 0.40301 * 16 15 13 18 18 H 1.09005 * 115.58322 * 158.88835 * 17 16 15 19 19 N 1.50646 * 101.03289 * 32.99118 * 17 16 15 20 20 C 1.46900 * 110.99898 * 61.62927 * 19 17 16 21 21 C 1.50697 * 109.47408 * 170.00433 * 20 19 17 22 22 O 1.21294 * 119.99963 * 0.02562 * 21 20 19 23 23 N 1.34777 * 120.00551 * 180.02562 * 21 20 19 24 24 C 1.37089 * 120.00506 * 179.97438 * 23 21 20 25 25 H 1.07999 * 120.00109 * 0.27174 * 24 23 21 26 26 C 1.38955 * 120.00379 * 179.97438 * 24 23 21 27 27 N 1.31411 * 119.99740 * 359.97438 * 26 24 23 28 28 Si 1.86799 * 120.00068 * 180.02562 * 26 24 23 29 29 H 1.48494 * 109.47426 * 60.00287 * 28 26 24 30 30 H 1.48505 * 109.46886 * 179.97438 * 28 26 24 31 31 H 1.48501 * 109.47010 * 299.99507 * 28 26 24 32 32 H 1.08999 * 109.46978 * 294.23534 * 1 2 3 33 33 H 1.09004 * 109.47193 * 54.23687 * 1 2 3 34 34 H 1.08999 * 109.47118 * 174.23281 * 1 2 3 35 35 H 1.09001 * 109.47128 * 239.99964 * 2 1 3 36 36 H 1.09003 * 109.47156 * 119.99759 * 2 1 3 37 37 H 1.08997 * 109.47181 * 185.66485 * 6 5 3 38 38 H 1.09011 * 109.46487 * 305.65848 * 6 5 3 39 39 H 1.08996 * 109.47213 * 65.65695 * 6 5 3 40 40 H 0.97005 * 119.99933 * 0.02562 * 9 7 3 41 41 H 1.09001 * 110.61210 * 122.98636 * 12 10 9 42 42 H 1.08995 * 110.74504 * 0.06717 * 12 10 9 43 43 H 1.09002 * 110.33149 * 312.80488 * 15 13 12 44 44 H 1.08991 * 111.15141 * 189.80113 * 15 13 12 45 45 H 1.09003 * 110.61407 * 241.89160 * 16 15 13 46 46 H 1.09001 * 110.74262 * 118.97160 * 16 15 13 47 47 H 1.09001 * 109.47276 * 50.00376 * 20 19 17 48 48 H 1.08998 * 109.47120 * 290.00252 * 20 19 17 49 49 H 0.97002 * 119.99353 * 359.97438 * 23 21 20 50 50 H 0.97001 * 120.00176 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6043 1.9820 -0.8410 5 8 1.6634 2.0809 1.2218 6 6 0.5246 2.9361 1.1038 7 6 3.5418 1.4445 -0.1257 8 8 4.2260 1.8608 0.7851 9 7 4.1245 0.9834 -1.2501 10 6 5.5844 0.9858 -1.3724 11 1 6.0522 0.8316 -0.4000 12 6 6.0758 2.3083 -2.0103 13 6 6.7745 1.8419 -3.3230 14 1 6.8892 2.5971 -4.1006 15 6 8.1018 1.1284 -2.8705 16 6 7.6000 -0.1881 -2.2283 17 6 6.0519 -0.1029 -2.3850 18 1 5.5205 -1.0533 -2.3329 19 7 5.9346 0.6454 -3.6872 20 6 6.5467 -0.1124 -4.7867 21 6 6.1996 0.5395 -6.1004 22 8 5.5105 1.5375 -6.1188 23 7 6.6548 0.0136 -7.2548 24 6 6.3387 0.6063 -8.4498 25 1 5.7284 1.4972 -8.4660 26 6 6.8084 0.0644 -9.6400 27 7 7.5562 -1.0160 -9.6200 28 14 6.3781 0.8725 -11.2682 29 1 6.8924 2.2655 -11.2808 30 1 6.9974 0.1068 -12.3798 31 1 4.9030 0.8878 -11.4387 32 1 -0.3633 0.4218 0.9371 33 1 -0.3634 0.6006 -0.8339 34 1 -0.3633 -1.0225 -0.1033 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 0.3639 3.4592 2.0465 38 1 0.6968 3.6629 0.3098 39 1 -0.3552 2.3387 0.8651 40 1 3.5773 0.6506 -1.9786 41 1 6.7873 2.8096 -1.3542 42 1 5.2349 2.9642 -2.2353 43 1 8.6278 1.7378 -2.1357 44 1 8.7458 0.9178 -3.7242 45 1 7.8774 -0.2313 -1.1750 46 1 7.9929 -1.0528 -2.7631 47 1 6.1692 -1.1349 -4.7776 48 1 7.6294 -0.1236 -4.6617 49 1 7.2062 -0.7843 -7.2400 50 1 7.8845 -1.3941 -10.4507 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110368899.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:48 Heat of formation + Delta-G solvation = -115.977433 kcal Electronic energy + Delta-G solvation = -30519.012436 eV Core-core repulsion = 26352.906586 eV Total energy + Delta-G solvation = -4166.105850 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.14930 -40.81244 -39.66368 -38.60973 -35.95525 -35.57835 -34.22311 -33.27215 -32.41101 -30.90927 -30.24473 -29.03650 -27.99520 -26.57585 -25.84349 -23.59167 -22.69754 -21.80250 -21.29458 -20.79560 -20.49409 -19.76843 -18.49966 -18.12068 -17.76634 -17.27497 -16.92412 -16.61697 -16.47824 -16.26501 -15.80328 -15.60902 -15.40250 -15.22155 -15.01753 -14.76190 -14.29190 -14.09480 -13.80041 -13.55093 -13.46996 -13.31938 -13.14098 -12.97156 -12.95273 -12.74243 -12.64335 -12.50141 -12.40266 -12.29269 -12.17834 -12.11843 -12.08081 -11.76695 -11.73654 -11.45767 -11.38463 -11.04547 -10.34126 -10.33289 -10.06618 -9.97297 -9.42312 -8.44155 -5.92167 1.40155 1.41716 1.52179 1.55722 1.91731 2.11565 2.29403 2.73208 3.00969 3.22842 3.34846 3.41554 3.67536 3.68174 3.85076 3.91640 3.95572 4.08380 4.19608 4.28635 4.32041 4.33435 4.36941 4.40858 4.43899 4.49513 4.51404 4.58724 4.60229 4.70305 4.76970 4.80885 4.84320 5.00404 5.02311 5.07622 5.09633 5.15210 5.19778 5.27204 5.37193 5.42560 5.49138 5.71741 5.87029 6.06796 6.10187 6.58043 6.64568 7.16700 7.22691 7.61630 8.18272 8.73123 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014616 B = 0.002489 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.288008 B =11244.972616 C =12281.851619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.132 4.132 3 C 0.073 3.927 4 H 0.105 0.895 5 O -0.387 6.387 6 C 0.018 3.982 7 C 0.508 3.492 8 O -0.572 6.572 9 N -0.702 5.702 10 C 0.159 3.841 11 H 0.097 0.903 12 C -0.115 4.115 13 C 0.048 3.952 14 H 0.084 0.916 15 C -0.154 4.154 16 C -0.143 4.143 17 C 0.044 3.956 18 H 0.139 0.861 19 N -0.485 5.485 20 C 0.038 3.962 21 C 0.445 3.555 22 O -0.617 6.617 23 N -0.578 5.578 24 C -0.330 4.330 25 H 0.077 0.923 26 C -0.013 4.013 27 N -0.921 5.921 28 Si 0.989 3.011 29 H -0.274 1.274 30 H -0.271 1.271 31 H -0.272 1.272 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.092 0.908 36 H 0.066 0.934 37 H 0.096 0.904 38 H 0.047 0.953 39 H 0.065 0.935 40 H 0.414 0.586 41 H 0.081 0.919 42 H 0.057 0.943 43 H 0.085 0.915 44 H 0.063 0.937 45 H 0.091 0.909 46 H 0.084 0.916 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.395 0.605 50 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.903 -1.498 19.303 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.170 4.170 3 C 0.012 3.988 4 H 0.123 0.877 5 O -0.306 6.306 6 C -0.078 4.078 7 C 0.294 3.706 8 O -0.451 6.451 9 N -0.354 5.354 10 C 0.053 3.947 11 H 0.115 0.885 12 C -0.154 4.154 13 C -0.061 4.061 14 H 0.102 0.898 15 C -0.193 4.193 16 C -0.182 4.182 17 C -0.064 4.064 18 H 0.156 0.844 19 N -0.208 5.208 20 C -0.093 4.093 21 C 0.232 3.768 22 O -0.503 6.503 23 N -0.216 5.216 24 C -0.460 4.460 25 H 0.095 0.905 26 C -0.213 4.213 27 N -0.563 5.563 28 Si 0.813 3.187 29 H -0.199 1.199 30 H -0.196 1.196 31 H -0.197 1.197 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.111 0.889 36 H 0.085 0.915 37 H 0.114 0.886 38 H 0.066 0.934 39 H 0.084 0.916 40 H 0.251 0.749 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.110 0.890 46 H 0.103 0.897 47 H 0.126 0.874 48 H 0.097 0.903 49 H 0.229 0.771 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.314 -0.555 19.746 21.432 hybrid contribution 0.766 -0.039 -1.490 1.676 sum -7.549 -0.594 18.255 19.763 Atomic orbital electron populations 1.21832 0.93574 1.03163 1.02310 1.21930 0.98155 0.93158 1.03737 1.22171 0.90325 0.96861 0.89454 0.87695 1.87977 1.49169 1.62798 1.30616 1.23201 0.87725 0.93358 1.03474 1.21100 0.91075 0.76586 0.81802 1.90675 1.66041 1.47594 1.40773 1.45886 1.07648 1.63915 1.17933 1.21982 0.80038 0.94416 0.98242 0.88529 1.22942 1.00080 0.97343 0.95062 1.24609 0.91617 0.93997 0.95831 0.89775 1.23546 0.97563 0.97377 1.00778 1.23198 0.94619 0.97581 1.02769 1.24877 0.96232 0.97085 0.88251 0.84383 1.67362 1.46393 1.04874 1.02192 1.21977 0.99915 0.98336 0.89120 1.20836 0.83486 0.86402 0.86047 1.90487 1.42991 1.28962 1.87854 1.41932 1.47138 1.27517 1.04973 1.19573 1.31400 1.10722 0.84262 0.90540 1.25979 0.96218 0.96726 1.02353 1.69661 1.35137 1.21666 1.29796 0.85043 0.78573 0.78089 0.76971 1.19909 1.19566 1.19711 0.92330 0.91673 0.91087 0.88938 0.91533 0.88606 0.93436 0.91614 0.74949 0.89999 0.92410 0.89614 0.91819 0.89013 0.89726 0.87350 0.90253 0.77126 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.86 71.98 0.64 -1.05 16 2 C -0.13 -1.89 5.61 30.60 0.17 -1.72 16 3 C 0.07 1.39 2.68 29.85 0.08 1.47 16 4 H 0.11 1.60 7.60 -2.38 -0.02 1.59 16 5 O -0.39 -8.71 9.67 -129.99 -1.26 -9.97 16 6 C 0.02 0.26 10.48 113.37 1.19 1.45 16 7 C 0.51 12.56 7.18 87.66 0.63 13.19 16 8 O -0.57 -19.13 16.16 15.94 0.26 -18.88 16 9 N -0.70 -14.89 4.97 -434.92 -2.16 -17.05 16 10 C 0.16 3.52 2.81 46.61 0.13 3.65 16 11 H 0.10 2.20 7.27 -2.38 -0.02 2.19 16 12 C -0.12 -2.95 6.24 32.21 0.20 -2.75 16 13 C 0.05 1.39 4.61 46.69 0.22 1.61 16 14 H 0.08 3.03 7.95 -2.39 -0.02 3.01 16 15 C -0.15 -3.45 5.69 32.75 0.19 -3.26 16 16 C -0.14 -2.57 5.65 32.20 0.18 -2.39 16 17 C 0.04 0.90 4.47 46.15 0.21 1.10 16 18 H 0.14 2.27 8.14 -2.38 -0.02 2.25 16 19 N -0.49 -14.12 5.09 -805.84 -4.10 -18.22 16 20 C 0.04 1.23 4.80 85.56 0.41 1.64 16 21 C 0.44 20.58 7.72 87.66 0.68 21.26 16 22 O -0.62 -33.56 15.58 -3.07 -0.05 -33.61 16 23 N -0.58 -29.11 5.29 -306.99 -1.62 -30.73 16 24 C -0.33 -18.56 9.68 84.04 0.81 -17.74 16 25 H 0.08 4.60 7.16 -2.91 -0.02 4.58 16 26 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 27 N -0.92 -49.30 13.05 21.66 0.28 -49.02 16 28 Si 0.99 42.72 29.55 68.60 2.03 44.74 16 29 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 30 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 31 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 32 H 0.06 0.68 6.58 -2.39 -0.02 0.67 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.09 1.07 7.77 -2.39 -0.02 1.05 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 0.64 7.99 -2.38 -0.02 0.62 16 39 H 0.07 0.69 6.00 -2.39 -0.01 0.67 16 40 H 0.41 7.67 8.36 -92.70 -0.78 6.89 16 41 H 0.08 1.92 7.89 -2.39 -0.02 1.90 16 42 H 0.06 1.68 7.98 -2.39 -0.02 1.66 16 43 H 0.09 1.67 7.89 -2.39 -0.02 1.65 16 44 H 0.06 1.55 6.91 -2.39 -0.02 1.53 16 45 H 0.09 1.37 7.85 -2.39 -0.02 1.35 16 46 H 0.08 1.41 7.63 -2.39 -0.02 1.39 16 47 H 0.11 3.01 8.09 -2.39 -0.02 3.00 16 48 H 0.08 2.32 5.02 -2.39 -0.01 2.30 16 49 H 0.40 18.89 7.90 -92.71 -0.73 18.16 16 50 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 Total: -1.00 -74.66 395.53 -0.97 -75.62 By element: Atomic # 1 Polarization: 41.43 SS G_CDS: -0.54 Total: 40.89 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.20 Total: 16.21 kcal Atomic # 7 Polarization: -107.42 SS G_CDS: -7.60 Total: -115.02 kcal Atomic # 8 Polarization: -61.41 SS G_CDS: -1.05 Total: -62.45 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -74.66 -0.97 -75.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110368899.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.357 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds