Wall clock time and date at job start Tue Mar 31 2020 23:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47636 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99658 * 2 1 3 5 5 C 1.50703 * 109.46912 * 60.00217 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.47083 * 120.87903 * 359.71565 * 7 5 4 9 9 C 1.53695 * 108.27426 * 128.75696 * 8 7 5 10 10 N 1.46894 * 109.25706 * 54.08603 * 9 8 7 11 11 C 1.46897 * 111.00366 * 172.60687 * 10 9 8 12 12 C 1.50700 * 109.47149 * 294.30322 * 11 10 9 13 13 O 1.21294 * 119.99874 * 359.97438 * 12 11 10 14 14 N 1.34784 * 120.00115 * 180.02562 * 12 11 10 15 15 C 1.37091 * 119.99764 * 179.97438 * 14 12 11 16 16 H 1.08006 * 120.00137 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99787 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00251 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99891 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47294 * 59.99770 * 19 17 15 21 21 H 1.48495 * 109.46932 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46700 * 299.99741 * 19 17 15 23 23 C 1.46906 * 111.26730 * 296.75600 * 10 9 8 24 24 C 1.47078 * 120.88364 * 180.02562 * 7 5 4 25 25 C 1.53001 * 109.47302 * 119.99712 * 2 1 3 26 26 C 1.53007 * 117.49332 * 13.62257 * 25 2 1 27 27 C 1.52998 * 117.49825 * 305.00380 * 25 2 1 28 28 H 1.08992 * 109.47554 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00231 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.00125 * 1 2 3 31 31 H 0.96698 * 114.00516 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47398 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47194 * 300.00476 * 4 2 1 34 34 H 1.08995 * 109.63429 * 248.52500 * 8 7 5 35 35 H 1.09000 * 109.62775 * 9.10833 * 8 7 5 36 36 H 1.08997 * 109.65130 * 294.08025 * 9 8 7 37 37 H 1.09004 * 109.44572 * 173.96178 * 9 8 7 38 38 H 1.09000 * 109.47304 * 54.30318 * 11 10 9 39 39 H 1.09003 * 109.47613 * 174.30126 * 11 10 9 40 40 H 0.96995 * 119.99753 * 0.02562 * 14 12 11 41 41 H 0.96997 * 119.99689 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.48797 * 303.14411 * 23 10 9 43 43 H 1.09005 * 109.49020 * 183.06847 * 23 10 9 44 44 H 1.09004 * 109.62590 * 350.89259 * 24 7 5 45 45 H 1.08995 * 109.62815 * 111.47562 * 24 7 5 46 46 H 1.08997 * 115.55350 * 159.32441 * 25 2 1 47 47 H 1.08990 * 117.50097 * 359.97438 * 26 25 2 48 48 H 1.09000 * 117.49686 * 145.02704 * 26 25 2 49 49 H 1.09004 * 117.50186 * 214.97575 * 27 25 2 50 50 H 1.09002 * 117.50183 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3685 7 7 1.8629 -0.4717 -3.7038 8 6 2.7118 -1.6624 -3.8612 9 6 2.0050 -2.6351 -4.8185 10 7 1.6805 -1.9348 -6.0683 11 6 1.1628 -2.8694 -7.0765 12 6 2.2497 -3.8361 -7.4704 13 8 3.3477 -3.7542 -6.9616 14 7 2.0019 -4.7911 -8.3887 15 6 2.9908 -5.6702 -8.7473 16 1 3.9683 -5.5978 -8.2937 17 6 2.7353 -6.6550 -9.6937 18 7 1.5458 -6.7434 -10.2452 19 14 4.0826 -7.8533 -10.1819 20 1 4.5275 -8.6122 -8.9855 21 1 3.5595 -8.7977 -11.2014 22 1 5.2321 -7.1021 -10.7473 23 6 0.7337 -0.8364 -5.8333 24 6 1.3839 0.2068 -4.9176 25 6 2.0400 -0.7212 1.2493 26 6 1.0318 -1.5508 2.0470 27 6 1.5415 -0.2212 2.6066 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9704 1.4236 -0.0004 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.6769 -1.3719 -4.2763 35 1 2.8558 -2.1402 -2.8921 36 1 1.0874 -3.0009 -4.3578 37 1 2.6643 -3.4761 -5.0335 38 1 0.3190 -3.4207 -6.6615 39 1 0.8362 -2.3124 -7.9547 40 1 1.1241 -4.8558 -8.7963 41 1 1.3674 -7.4311 -10.9055 42 1 -0.1661 -1.2273 -5.3585 43 1 0.4715 -0.3725 -6.7843 44 1 0.6494 0.9655 -4.6473 45 1 2.2240 0.6732 -5.4321 46 1 3.0641 -1.0901 1.1940 47 1 0.0053 -1.5825 1.6821 48 1 1.3927 -2.4658 2.5167 49 1 2.2377 -0.2614 3.4445 50 1 0.8506 0.6219 2.6097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112769293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:52 Heat of formation + Delta-G solvation = -74.661963 kcal Electronic energy + Delta-G solvation = -30225.993347 eV Core-core repulsion = 26061.679070 eV Total energy + Delta-G solvation = -4164.314277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.63756 -39.31527 -38.43413 -37.19606 -35.64311 -34.51179 -33.80985 -32.14872 -31.30144 -30.92173 -29.13712 -27.89324 -25.70964 -24.49283 -23.82460 -23.40494 -22.68887 -21.16215 -19.89982 -19.31468 -18.89550 -17.92501 -17.47482 -16.87867 -16.24675 -16.07440 -15.85710 -15.33402 -15.09187 -15.01477 -14.79013 -14.49943 -14.30689 -14.01950 -13.80200 -13.65053 -13.40335 -13.26691 -13.02979 -12.63986 -12.48492 -12.06055 -11.97290 -11.85550 -11.64047 -11.55752 -11.48501 -11.28271 -11.17022 -11.12345 -11.07048 -10.83420 -10.82412 -10.49966 -10.47591 -10.25494 -10.16849 -9.57277 -9.50430 -8.83420 -8.38910 -8.02778 -7.92692 -6.45719 -3.86811 2.59582 2.87767 3.16607 3.23072 3.26845 3.36773 3.84023 3.91277 4.09625 4.18964 4.20842 4.34469 4.57914 4.62011 4.74075 4.78966 4.89277 4.96340 4.99328 5.09172 5.18840 5.20535 5.25627 5.31244 5.33510 5.40926 5.45697 5.50090 5.55165 5.65335 5.71150 5.72276 5.77417 5.82162 5.84172 5.87800 5.90397 6.10847 6.16030 6.21555 6.25654 6.50372 7.11714 7.27730 7.41160 7.50904 7.53067 8.01456 8.16944 8.56808 9.13421 9.49633 10.00783 10.71772 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.002094 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.137775 B =13366.129293 C =14121.097437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.182 3.818 3 O -0.538 6.538 4 C -0.167 4.167 5 C 0.516 3.484 6 O -0.526 6.526 7 N -0.615 5.615 8 C 0.114 3.886 9 C 0.039 3.961 10 N -0.515 5.515 11 C 0.047 3.953 12 C 0.443 3.557 13 O -0.579 6.579 14 N -0.562 5.562 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.901 5.901 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.041 3.959 24 C 0.120 3.880 25 C -0.190 4.190 26 C -0.178 4.178 27 C -0.165 4.165 28 H 0.064 0.936 29 H 0.058 0.942 30 H 0.092 0.908 31 H 0.368 0.632 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.115 0.885 38 H 0.047 0.953 39 H 0.090 0.910 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.034 0.966 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.074 0.926 46 H 0.105 0.895 47 H 0.103 0.897 48 H 0.094 0.906 49 H 0.092 0.908 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.513 10.875 19.475 22.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.141 3.859 3 O -0.342 6.342 4 C -0.207 4.207 5 C 0.304 3.696 6 O -0.403 6.403 7 N -0.349 5.349 8 C -0.008 4.008 9 C -0.090 4.090 10 N -0.239 5.239 11 C -0.085 4.085 12 C 0.228 3.772 13 O -0.464 6.464 14 N -0.199 5.199 15 C -0.429 4.429 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.542 5.542 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.088 4.088 24 C -0.003 4.003 25 C -0.209 4.209 26 C -0.214 4.214 27 C -0.202 4.202 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.214 0.786 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.099 0.901 35 H 0.101 0.899 36 H 0.045 0.955 37 H 0.133 0.867 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.052 0.948 43 H 0.104 0.896 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.112 0.888 49 H 0.111 0.889 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.444 11.646 19.541 22.879 hybrid contribution 0.085 -1.468 -0.413 1.527 sum -2.359 10.179 19.128 21.796 Atomic orbital electron populations 1.22099 0.92464 1.01913 1.04677 1.20265 0.95049 0.81523 0.89049 1.86703 1.25715 1.25059 1.96734 1.22442 1.02791 1.01633 0.93814 1.20405 0.80469 0.84612 0.84111 1.90655 1.37684 1.26043 1.85872 1.48304 1.51323 1.29657 1.05662 1.21989 0.94384 0.84987 0.99485 1.22720 0.99734 0.97622 0.88875 1.61494 1.42536 1.10877 1.09028 1.21851 0.96079 0.94570 0.95965 1.19711 0.89368 0.83976 0.84127 1.90470 1.24703 1.74212 1.56989 1.41870 1.14347 1.27517 1.36147 1.19638 0.94372 1.08077 1.20849 0.87929 1.25273 0.97450 0.98556 0.96657 1.69602 1.20901 1.35056 1.28655 0.85915 0.80352 0.79635 0.78302 1.19916 1.20987 1.19869 1.22519 0.93468 0.93150 0.99681 1.21666 0.99799 0.94709 0.84139 1.23060 0.99559 1.04861 0.93415 1.23130 0.99588 0.95167 1.03562 1.22864 1.03717 0.97964 0.95627 0.91730 0.92263 0.88932 0.78580 0.88725 0.88063 0.90059 0.89878 0.95516 0.86688 0.93480 0.89186 0.77475 0.91780 0.94778 0.89567 0.88895 0.90754 0.87686 0.87914 0.88779 0.88919 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 7.18 37.16 0.27 -1.32 16 2 C 0.18 1.69 0.80 -90.62 -0.07 1.61 16 3 O -0.54 -5.78 11.85 -53.48 -0.63 -6.42 16 4 C -0.17 -1.49 3.31 -27.88 -0.09 -1.58 16 5 C 0.52 6.33 7.27 -10.98 -0.08 6.25 16 6 O -0.53 -8.03 12.41 -12.69 -0.16 -8.19 16 7 N -0.61 -7.53 3.00 -172.16 -0.52 -8.04 16 8 C 0.11 1.36 6.53 -3.36 -0.02 1.34 16 9 C 0.04 0.57 5.27 -3.47 -0.02 0.56 16 10 N -0.51 -8.08 4.37 -235.44 -1.03 -9.10 16 11 C 0.05 0.79 5.45 -4.98 -0.03 0.76 16 12 C 0.44 9.93 7.44 -10.98 -0.08 9.85 16 13 O -0.58 -14.65 13.91 5.55 0.08 -14.57 16 14 N -0.56 -13.76 5.29 -10.96 -0.06 -13.82 16 15 C -0.30 -8.10 9.68 -14.94 -0.14 -8.24 16 16 H 0.10 2.89 7.16 -52.48 -0.38 2.52 16 17 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 18 N -0.90 -24.03 13.05 55.50 0.72 -23.30 16 19 Si 0.93 20.58 29.55 -169.99 -5.02 15.55 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 C 0.04 0.52 5.62 -3.68 -0.02 0.50 16 24 C 0.12 1.48 6.60 -3.58 -0.02 1.45 16 25 C -0.19 -1.41 5.32 -90.62 -0.48 -1.89 16 26 C -0.18 -1.23 9.65 -26.73 -0.26 -1.48 16 27 C -0.16 -1.19 9.85 -26.73 -0.26 -1.45 16 28 H 0.06 0.56 6.74 -51.93 -0.35 0.21 16 29 H 0.06 0.59 6.96 -51.93 -0.36 0.23 16 30 H 0.09 1.21 5.51 -51.93 -0.29 0.92 16 31 H 0.37 2.68 9.05 45.56 0.41 3.10 16 32 H 0.09 0.68 7.99 -51.93 -0.41 0.26 16 33 H 0.10 0.80 7.67 -51.93 -0.40 0.41 16 34 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.08 0.77 6.02 -51.93 -0.31 0.45 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.12 2.05 5.77 -51.93 -0.30 1.75 16 38 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 39 H 0.09 1.39 7.97 -51.93 -0.41 0.98 16 40 H 0.39 9.23 7.90 -40.82 -0.32 8.90 16 41 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.98 7.99 -51.93 -0.41 0.57 16 44 H 0.09 1.16 7.06 -51.93 -0.37 0.79 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.10 0.71 5.89 -51.93 -0.31 0.41 16 48 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 49 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.10 0.79 7.29 -51.93 -0.38 0.41 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -32.47 390.62 -9.25 -41.72 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -7.10 Total: 13.43 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -1.42 Total: 6.85 kcal Atomic # 7 Polarization: -53.39 SS G_CDS: -0.88 Total: -54.27 kcal Atomic # 8 Polarization: -28.47 SS G_CDS: -0.71 Total: -29.18 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -32.47 -9.25 -41.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112769293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.943 kcal (2) G-P(sol) polarization free energy of solvation -32.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds