Wall clock time and date at job start Tue Mar 31 2020 23:11:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47636 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99658 * 2 1 3 5 5 C 1.50703 * 109.46912 * 60.00217 * 4 2 1 6 6 O 1.21278 * 119.99985 * 359.97438 * 5 4 2 7 7 N 1.34777 * 120.00161 * 180.02562 * 5 4 2 8 8 C 1.47083 * 120.87903 * 359.71565 * 7 5 4 9 9 C 1.53695 * 108.27426 * 128.75696 * 8 7 5 10 10 N 1.46894 * 109.25706 * 54.08603 * 9 8 7 11 11 C 1.46897 * 111.00366 * 172.60687 * 10 9 8 12 12 C 1.50700 * 109.47149 * 294.30322 * 11 10 9 13 13 O 1.21294 * 119.99874 * 359.97438 * 12 11 10 14 14 N 1.34784 * 120.00115 * 180.02562 * 12 11 10 15 15 C 1.37091 * 119.99764 * 179.97438 * 14 12 11 16 16 H 1.08006 * 120.00137 * 0.02562 * 15 14 12 17 17 C 1.38948 * 119.99787 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00251 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99891 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47294 * 59.99770 * 19 17 15 21 21 H 1.48495 * 109.46932 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.46700 * 299.99741 * 19 17 15 23 23 C 1.46906 * 111.26730 * 296.75600 * 10 9 8 24 24 C 1.47078 * 120.88364 * 180.02562 * 7 5 4 25 25 C 1.53001 * 109.47302 * 119.99712 * 2 1 3 26 26 C 1.53007 * 117.49332 * 13.62257 * 25 2 1 27 27 C 1.52998 * 117.49825 * 305.00380 * 25 2 1 28 28 H 1.08992 * 109.47554 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00231 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.00125 * 1 2 3 31 31 H 0.96698 * 114.00516 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47398 * 180.02562 * 4 2 1 33 33 H 1.09001 * 109.47194 * 300.00476 * 4 2 1 34 34 H 1.08995 * 109.63429 * 248.52500 * 8 7 5 35 35 H 1.09000 * 109.62775 * 9.10833 * 8 7 5 36 36 H 1.08997 * 109.65130 * 294.08025 * 9 8 7 37 37 H 1.09004 * 109.44572 * 173.96178 * 9 8 7 38 38 H 1.09000 * 109.47304 * 54.30318 * 11 10 9 39 39 H 1.09003 * 109.47613 * 174.30126 * 11 10 9 40 40 H 0.96995 * 119.99753 * 0.02562 * 14 12 11 41 41 H 0.96997 * 119.99689 * 180.02562 * 18 17 15 42 42 H 1.09000 * 109.48797 * 303.14411 * 23 10 9 43 43 H 1.09005 * 109.49020 * 183.06847 * 23 10 9 44 44 H 1.09004 * 109.62590 * 350.89259 * 24 7 5 45 45 H 1.08995 * 109.62815 * 111.47562 * 24 7 5 46 46 H 1.08997 * 115.55350 * 159.32441 * 25 2 1 47 47 H 1.08990 * 117.50097 * 359.97438 * 26 25 2 48 48 H 1.09000 * 117.49686 * 145.02704 * 26 25 2 49 49 H 1.09004 * 117.50186 * 214.97575 * 27 25 2 50 50 H 1.09002 * 117.50183 * 359.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5377 -0.0109 -2.4797 6 8 0.8401 0.9749 -2.3685 7 7 1.8629 -0.4717 -3.7038 8 6 2.7118 -1.6624 -3.8612 9 6 2.0050 -2.6351 -4.8185 10 7 1.6805 -1.9348 -6.0683 11 6 1.1628 -2.8694 -7.0765 12 6 2.2497 -3.8361 -7.4704 13 8 3.3477 -3.7542 -6.9616 14 7 2.0019 -4.7911 -8.3887 15 6 2.9908 -5.6702 -8.7473 16 1 3.9683 -5.5978 -8.2937 17 6 2.7353 -6.6550 -9.6937 18 7 1.5458 -6.7434 -10.2452 19 14 4.0826 -7.8533 -10.1819 20 1 4.5275 -8.6122 -8.9855 21 1 3.5595 -8.7977 -11.2014 22 1 5.2321 -7.1021 -10.7473 23 6 0.7337 -0.8364 -5.8333 24 6 1.3839 0.2068 -4.9176 25 6 2.0400 -0.7212 1.2493 26 6 1.0318 -1.5508 2.0470 27 6 1.5415 -0.2212 2.6066 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 2.9704 1.4236 -0.0004 32 1 3.1300 -0.7217 -1.2490 33 1 1.6766 -1.7490 -1.2492 34 1 3.6769 -1.3719 -4.2763 35 1 2.8558 -2.1402 -2.8921 36 1 1.0874 -3.0009 -4.3578 37 1 2.6643 -3.4761 -5.0335 38 1 0.3190 -3.4207 -6.6615 39 1 0.8362 -2.3124 -7.9547 40 1 1.1241 -4.8558 -8.7963 41 1 1.3674 -7.4311 -10.9055 42 1 -0.1661 -1.2273 -5.3585 43 1 0.4715 -0.3725 -6.7843 44 1 0.6494 0.9655 -4.6473 45 1 2.2240 0.6732 -5.4321 46 1 3.0641 -1.0901 1.1940 47 1 0.0053 -1.5825 1.6821 48 1 1.3927 -2.4658 2.5167 49 1 2.2377 -0.2614 3.4445 50 1 0.8506 0.6219 2.6097 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112769293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:51 Heat of formation + Delta-G solvation = -98.397333 kcal Electronic energy + Delta-G solvation = -30227.022590 eV Core-core repulsion = 26061.679070 eV Total energy + Delta-G solvation = -4165.343520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.55606 -40.48752 -39.66114 -38.43994 -36.33985 -36.01907 -35.37472 -33.24975 -32.98960 -31.88903 -30.32709 -28.86101 -27.22717 -25.62259 -25.04364 -24.38460 -23.22444 -22.18996 -21.04956 -20.58373 -19.96093 -19.78438 -18.32183 -17.84489 -17.63909 -16.95620 -16.76021 -16.57754 -16.36750 -16.27988 -16.01581 -15.73761 -15.40786 -15.28245 -15.19340 -14.95517 -14.38319 -14.14628 -13.97810 -13.88029 -13.49975 -13.33763 -13.22491 -12.95812 -12.77515 -12.77008 -12.70041 -12.41437 -12.33910 -12.23348 -12.14822 -12.10708 -12.01063 -11.77509 -11.41770 -11.39785 -11.07525 -10.89596 -10.47630 -10.31787 -9.98412 -9.69746 -9.20609 -8.44150 -5.92437 1.41264 1.43473 1.53903 1.66892 1.94767 2.07743 2.29720 2.72985 2.80665 3.22924 3.37009 3.38590 3.57889 3.61758 3.84684 3.96980 3.97789 4.04129 4.14904 4.16916 4.22487 4.24110 4.29674 4.37087 4.44718 4.49181 4.51943 4.58566 4.61982 4.73779 4.77403 4.81756 4.85716 4.93742 4.95217 5.01803 5.04787 5.06774 5.26875 5.29492 5.40474 5.43306 5.52067 5.82983 6.05648 6.14574 6.45226 6.62760 6.94865 7.15273 7.23117 7.59257 8.14131 8.72928 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020461 B = 0.002094 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.137775 B =13366.129293 C =14121.097437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.182 3.818 3 O -0.562 6.562 4 C -0.162 4.162 5 C 0.513 3.487 6 O -0.559 6.559 7 N -0.616 5.616 8 C 0.123 3.877 9 C 0.040 3.960 10 N -0.531 5.531 11 C 0.058 3.942 12 C 0.444 3.556 13 O -0.610 6.610 14 N -0.575 5.575 15 C -0.329 4.329 16 H 0.082 0.918 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.992 3.008 20 H -0.270 1.270 21 H -0.274 1.274 22 H -0.272 1.272 23 C 0.047 3.953 24 C 0.120 3.880 25 C -0.187 4.187 26 C -0.175 4.175 27 C -0.170 4.170 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.062 0.938 31 H 0.381 0.619 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.034 0.966 37 H 0.082 0.918 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.395 0.605 41 H 0.276 0.724 42 H 0.037 0.963 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.122 0.878 47 H 0.099 0.901 48 H 0.107 0.893 49 H 0.104 0.896 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.190 10.391 20.463 23.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.141 3.859 3 O -0.368 6.368 4 C -0.202 4.202 5 C 0.303 3.697 6 O -0.438 6.438 7 N -0.350 5.350 8 C 0.001 3.999 9 C -0.088 4.088 10 N -0.256 5.256 11 C -0.073 4.073 12 C 0.231 3.769 13 O -0.495 6.495 14 N -0.213 5.213 15 C -0.458 4.458 16 H 0.100 0.900 17 C -0.215 4.215 18 N -0.563 5.563 19 Si 0.816 3.184 20 H -0.196 1.196 21 H -0.198 1.198 22 H -0.198 1.198 23 C -0.081 4.081 24 C -0.003 4.003 25 C -0.206 4.206 26 C -0.212 4.212 27 C -0.207 4.207 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.229 0.771 32 H 0.137 0.863 33 H 0.135 0.865 34 H 0.091 0.909 35 H 0.133 0.867 36 H 0.053 0.947 37 H 0.101 0.899 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.120 0.880 44 H 0.110 0.890 45 H 0.091 0.909 46 H 0.140 0.860 47 H 0.118 0.882 48 H 0.125 0.875 49 H 0.122 0.878 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.127 11.172 20.537 23.476 hybrid contribution -0.042 -1.226 -0.674 1.399 sum -2.169 9.947 19.863 22.320 Atomic orbital electron populations 1.22069 0.93718 1.02283 1.02966 1.20274 0.94210 0.81273 0.90135 1.86671 1.27113 1.26180 1.96860 1.22489 1.04197 1.01766 0.91724 1.20988 0.79693 0.84242 0.84768 1.90657 1.39133 1.27664 1.86304 1.48367 1.51244 1.29581 1.05779 1.21937 0.93292 0.84382 1.00319 1.22632 0.99579 0.97414 0.89195 1.61479 1.43713 1.11190 1.09257 1.21717 0.94178 0.93982 0.97401 1.20667 0.90160 0.83627 0.82462 1.90452 1.26593 1.74884 1.57618 1.41946 1.14067 1.28114 1.37130 1.19616 0.94417 1.09773 1.22039 0.90037 1.26034 0.99604 0.99654 0.96179 1.69670 1.22104 1.35631 1.28895 0.85002 0.77724 0.77593 0.78118 1.19557 1.19835 1.19776 1.22532 0.92817 0.92099 1.00652 1.21622 0.99711 0.94610 0.84323 1.23003 1.00398 1.04816 0.92362 1.23194 0.99389 0.95438 1.03160 1.22883 1.03871 0.97835 0.96081 0.90342 0.92611 0.91885 0.77078 0.86311 0.86452 0.90943 0.86725 0.94743 0.89933 0.91780 0.87189 0.77142 0.91421 0.94434 0.88030 0.89038 0.90935 0.86010 0.88234 0.87506 0.87772 0.89696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.05 7.18 71.98 0.52 -2.54 16 2 C 0.18 3.06 0.80 -10.79 -0.01 3.05 16 3 O -0.56 -11.53 11.85 -131.53 -1.56 -13.09 16 4 C -0.16 -2.48 3.31 29.85 0.10 -2.38 16 5 C 0.51 11.84 7.27 87.66 0.64 12.48 16 6 O -0.56 -16.85 12.41 14.43 0.18 -16.67 16 7 N -0.62 -14.09 3.00 -816.98 -2.45 -16.54 16 8 C 0.12 2.72 6.53 86.50 0.57 3.29 16 9 C 0.04 1.15 5.27 86.54 0.46 1.60 16 10 N -0.53 -16.00 4.37 -898.80 -3.93 -19.93 16 11 C 0.06 1.91 5.45 85.56 0.47 2.38 16 12 C 0.44 19.99 7.44 87.66 0.65 20.64 16 13 O -0.61 -31.35 13.91 -3.07 -0.04 -31.39 16 14 N -0.58 -28.48 5.29 -306.98 -1.62 -30.10 16 15 C -0.33 -18.07 9.68 84.04 0.81 -17.26 16 16 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 17 C -0.02 -0.79 5.50 84.93 0.47 -0.33 16 18 N -0.92 -48.98 13.05 21.66 0.28 -48.70 16 19 Si 0.99 41.98 29.55 68.60 2.03 44.00 16 20 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 21 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 23 C 0.05 1.12 5.62 86.39 0.49 1.60 16 24 C 0.12 2.83 6.60 86.36 0.57 3.40 16 25 C -0.19 -2.31 5.32 -10.79 -0.06 -2.37 16 26 C -0.18 -2.02 9.65 30.60 0.30 -1.72 16 27 C -0.17 -2.16 9.85 30.59 0.30 -1.86 16 28 H 0.08 1.27 6.74 -2.39 -0.02 1.26 16 29 H 0.05 1.10 6.96 -2.38 -0.02 1.09 16 30 H 0.06 1.66 5.51 -2.39 -0.01 1.65 16 31 H 0.38 5.03 9.05 -74.06 -0.67 4.36 16 32 H 0.12 1.27 7.99 -2.39 -0.02 1.25 16 33 H 0.12 1.46 7.67 -2.39 -0.02 1.44 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.11 1.77 6.02 -2.39 -0.01 1.76 16 36 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.08 2.94 5.77 -2.38 -0.01 2.92 16 38 H 0.06 1.91 8.12 -2.39 -0.02 1.89 16 39 H 0.11 3.18 7.97 -2.39 -0.02 3.17 16 40 H 0.39 18.73 7.90 -92.71 -0.73 18.00 16 41 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.10 2.09 7.99 -2.38 -0.02 2.07 16 44 H 0.09 2.21 7.06 -2.39 -0.02 2.19 16 45 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.10 1.20 5.89 -2.39 -0.01 1.19 16 48 H 0.11 0.97 8.14 -2.39 -0.02 0.96 16 49 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.08 1.31 7.29 -2.39 -0.02 1.29 16 Total: -1.00 -71.05 390.62 -1.28 -72.33 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.43 Total: 40.09 kcal Atomic # 6 Polarization: 13.73 SS G_CDS: 6.26 Total: 19.99 kcal Atomic # 7 Polarization: -107.55 SS G_CDS: -7.72 Total: -115.27 kcal Atomic # 8 Polarization: -59.72 SS G_CDS: -1.42 Total: -61.14 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.00 kcal Total: -71.05 -1.28 -72.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112769293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.070 kcal (2) G-P(sol) polarization free energy of solvation -71.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds