Wall clock time and date at job start Tue Mar 31 2020 23:11:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47396 * 2 1 4 4 C 1.53008 * 109.46895 * 119.99919 * 2 1 3 5 5 C 1.50703 * 109.46904 * 180.63837 * 4 2 1 6 6 O 1.21280 * 120.00062 * 354.47109 * 5 4 2 7 7 N 1.34769 * 119.99633 * 174.46659 * 5 4 2 8 8 C 1.47086 * 120.88575 * 359.72448 * 7 5 4 9 9 C 1.53696 * 108.27631 * 128.75297 * 8 7 5 10 10 N 1.46899 * 109.25796 * 54.08555 * 9 8 7 11 11 C 1.46901 * 110.99636 * 172.60505 * 10 9 8 12 12 C 1.50700 * 109.47244 * 294.29702 * 11 10 9 13 13 O 1.21292 * 119.99860 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99740 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99904 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99919 * 0.02562 * 15 14 12 17 17 C 1.38950 * 120.00195 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00015 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99867 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47261 * 89.99589 * 19 17 15 21 21 H 1.48501 * 109.46823 * 209.99825 * 19 17 15 22 22 H 1.48500 * 109.46934 * 329.99590 * 19 17 15 23 23 C 1.46898 * 111.26860 * 296.75456 * 10 9 8 24 24 C 1.47078 * 120.88196 * 179.97438 * 7 5 4 25 25 C 1.52993 * 109.47077 * 239.99703 * 2 1 3 26 26 C 1.53002 * 117.49890 * 128.62533 * 25 2 1 27 27 C 1.52998 * 117.49908 * 60.00078 * 25 2 1 28 28 H 1.09007 * 109.46666 * 304.80237 * 1 2 3 29 29 H 1.09001 * 109.47073 * 64.80017 * 1 2 3 30 30 H 1.08995 * 109.47578 * 184.80282 * 1 2 3 31 31 H 0.96698 * 114.00015 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46878 * 60.63756 * 4 2 1 33 33 H 1.09000 * 109.46811 * 300.64233 * 4 2 1 34 34 H 1.09001 * 109.62548 * 248.52361 * 8 7 5 35 35 H 1.08998 * 109.62497 * 9.10113 * 8 7 5 36 36 H 1.08997 * 109.64499 * 294.07435 * 9 8 7 37 37 H 1.09004 * 109.41730 * 173.95327 * 9 8 7 38 38 H 1.08997 * 109.46997 * 54.30616 * 11 10 9 39 39 H 1.09000 * 109.46540 * 174.30252 * 11 10 9 40 40 H 0.96999 * 120.00338 * 0.02562 * 14 12 11 41 41 H 0.96996 * 119.99845 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.49265 * 303.14711 * 23 10 9 43 43 H 1.08993 * 109.49621 * 183.06492 * 23 10 9 44 44 H 1.09003 * 109.62791 * 350.90093 * 24 7 5 45 45 H 1.08997 * 109.62973 * 111.47768 * 24 7 5 46 46 H 1.09002 * 115.55015 * 274.33277 * 25 2 1 47 47 H 1.08999 * 117.49615 * 0.02562 * 26 25 2 48 48 H 1.08997 * 117.50133 * 145.02383 * 26 25 2 49 49 H 1.09003 * 117.50121 * 214.98079 * 27 25 2 50 50 H 1.09003 * 117.50151 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5469 -0.7076 1.2573 6 8 4.1544 -0.2635 0.3061 7 7 4.2195 -1.1888 2.3214 8 6 3.5025 -1.7263 3.4878 9 6 4.0723 -3.1181 3.8045 10 7 5.5295 -3.0206 3.9628 11 6 6.0936 -4.2911 4.4377 12 6 5.5924 -4.5738 5.8306 13 8 4.8391 -3.7938 6.3739 14 7 5.9806 -5.6937 6.4720 15 6 5.5243 -5.9511 7.7389 16 1 4.8535 -5.2567 8.2227 17 6 5.9240 -7.1061 8.4001 18 7 5.4870 -7.3526 9.6146 19 14 7.0837 -8.3076 7.5629 20 1 8.4881 -7.9400 7.8760 21 1 6.8107 -9.6824 8.0534 22 1 6.8743 -8.2556 6.0936 23 6 6.1737 -2.5927 2.7138 24 6 5.6900 -1.1854 2.3496 25 6 2.0400 -0.7213 -1.2491 26 6 3.0742 0.0051 -2.1116 27 6 1.6357 -0.1496 -2.6095 28 1 -0.3633 0.5866 0.8439 29 1 -0.3633 0.4376 -0.9299 30 1 -0.3634 -1.0240 0.0860 31 1 2.9704 1.4235 0.0004 32 1 1.6860 -1.7521 1.2436 33 1 1.6672 -0.2141 2.1392 34 1 3.6462 -1.0652 4.3424 35 1 2.4399 -1.8076 3.2587 36 1 3.8399 -3.8034 2.9893 37 1 3.6300 -3.4890 4.7291 38 1 5.7869 -5.0967 3.7706 39 1 7.1814 -4.2236 4.4497 40 1 6.5828 -6.3176 6.0373 41 1 5.7664 -8.1586 10.0763 42 1 5.9121 -3.2853 1.9138 43 1 7.2554 -2.5824 2.8474 44 1 6.0744 -0.9090 1.3678 45 1 6.0403 -0.4734 3.0968 46 1 2.1266 -1.8045 -1.1641 47 1 3.3915 0.9966 -1.7887 48 1 3.8416 -0.6002 -2.5941 49 1 1.4568 -0.8567 -3.4196 50 1 1.0068 0.7406 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112769294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:56 Heat of formation + Delta-G solvation = -72.879609 kcal Electronic energy + Delta-G solvation = -30498.080382 eV Core-core repulsion = 26333.843394 eV Total energy + Delta-G solvation = -4164.236988 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.82398 -39.38799 -38.45598 -37.23022 -35.15405 -34.65380 -33.90954 -32.53187 -31.74214 -31.21318 -29.32075 -28.15772 -25.79889 -24.06147 -23.78403 -23.28920 -22.36659 -21.36403 -20.09912 -19.46580 -19.04370 -18.36806 -17.49306 -16.94958 -16.55299 -16.10072 -15.94626 -15.39438 -15.21743 -15.13356 -14.65084 -14.55021 -14.29930 -14.15867 -13.94708 -13.33442 -13.20201 -13.06310 -12.95819 -12.67517 -12.62049 -12.41069 -12.36048 -12.17321 -11.93199 -11.77591 -11.47145 -11.45466 -11.31819 -11.28722 -11.19829 -10.96728 -10.64828 -10.60300 -10.40038 -10.03429 -10.02275 -9.66909 -9.59636 -8.98729 -8.54416 -8.24444 -8.07938 -6.36812 -3.88489 2.42173 2.78909 2.97472 3.02365 3.10956 3.64993 3.67267 3.79421 4.01524 4.04977 4.23942 4.39935 4.49172 4.60994 4.79353 4.87491 4.91470 4.93050 5.06695 5.12575 5.13095 5.16378 5.17666 5.26186 5.30213 5.34054 5.41318 5.52678 5.55531 5.56576 5.62231 5.64090 5.68402 5.75779 5.84467 5.87203 5.91972 6.00968 6.01802 6.05853 6.10472 6.35700 6.95487 7.14402 7.25042 7.52021 7.54162 7.98327 8.08039 8.53531 8.88893 9.36136 9.75738 10.76084 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.002138 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.425739 B =13090.338888 C =13374.536441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.179 3.821 3 O -0.562 6.562 4 C -0.169 4.169 5 C 0.517 3.483 6 O -0.543 6.543 7 N -0.610 5.610 8 C 0.113 3.887 9 C 0.038 3.962 10 N -0.514 5.514 11 C 0.044 3.956 12 C 0.452 3.548 13 O -0.560 6.560 14 N -0.589 5.589 15 C -0.305 4.305 16 H 0.120 0.880 17 C 0.042 3.958 18 N -0.880 5.880 19 Si 0.879 3.121 20 H -0.270 1.270 21 H -0.276 1.276 22 H -0.270 1.270 23 C 0.041 3.959 24 C 0.119 3.881 25 C -0.172 4.172 26 C -0.139 4.139 27 C -0.184 4.184 28 H 0.064 0.936 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.384 0.616 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.028 0.972 37 H 0.117 0.883 38 H 0.048 0.952 39 H 0.091 0.909 40 H 0.370 0.630 41 H 0.274 0.726 42 H 0.034 0.966 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.099 0.901 47 H 0.097 0.903 48 H 0.086 0.914 49 H 0.087 0.913 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.408 10.646 -21.636 24.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.138 3.862 3 O -0.373 6.373 4 C -0.209 4.209 5 C 0.306 3.694 6 O -0.422 6.422 7 N -0.343 5.343 8 C -0.010 4.010 9 C -0.090 4.090 10 N -0.239 5.239 11 C -0.088 4.088 12 C 0.237 3.763 13 O -0.443 6.443 14 N -0.229 5.229 15 C -0.434 4.434 16 H 0.138 0.862 17 C -0.161 4.161 18 N -0.519 5.519 19 Si 0.706 3.294 20 H -0.196 1.196 21 H -0.202 1.202 22 H -0.196 1.196 23 C -0.088 4.088 24 C -0.004 4.004 25 C -0.191 4.191 26 C -0.176 4.176 27 C -0.221 4.221 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.237 0.763 32 H 0.120 0.880 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.046 0.954 37 H 0.134 0.866 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.052 0.948 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.117 0.883 47 H 0.115 0.885 48 H 0.104 0.896 49 H 0.106 0.894 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.131 11.747 -21.203 24.777 hybrid contribution 1.504 -2.210 -0.884 2.816 sum -3.627 9.537 -22.088 24.330 Atomic orbital electron populations 1.21742 0.92068 1.02427 1.03164 1.20309 0.93914 0.81768 0.90233 1.86428 1.28692 1.25473 1.96711 1.22508 0.92941 1.03880 1.01587 1.20608 0.89958 0.77103 0.81716 1.90628 1.70207 1.47235 1.34104 1.48293 1.07275 1.61190 1.17566 1.22035 0.95701 0.95389 0.87860 1.22741 0.88337 0.95348 1.02611 1.61489 1.04232 1.29989 1.28211 1.21887 1.00453 0.90537 0.95897 1.19599 0.85956 0.83297 0.87427 1.90517 1.38325 1.47503 1.67910 1.42223 1.44159 1.20273 1.16200 1.19417 1.27532 1.07365 0.89073 0.86213 1.25048 0.97904 0.97426 0.95771 1.69617 1.43880 1.26944 1.11494 0.86678 0.81690 0.81685 0.79351 1.19566 1.20164 1.19573 1.22502 0.99719 0.95905 0.90667 1.21676 0.79193 0.96747 1.02792 1.22808 1.05480 0.99022 0.91780 1.22659 0.91281 1.01996 1.01636 1.23005 0.99508 1.03039 0.96571 0.91700 0.91479 0.91066 0.76301 0.87971 0.88015 0.89762 0.89618 0.95418 0.86557 0.93354 0.89036 0.79711 0.91561 0.94775 0.89514 0.88762 0.90578 0.88285 0.88498 0.89581 0.89437 0.88813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 8.75 37.16 0.33 -0.73 16 2 C 0.18 1.65 0.92 -90.62 -0.08 1.57 16 3 O -0.56 -6.23 12.10 -52.19 -0.63 -6.86 16 4 C -0.17 -1.46 3.33 -27.88 -0.09 -1.56 16 5 C 0.52 5.61 7.20 -10.99 -0.08 5.54 16 6 O -0.54 -6.71 10.83 -11.40 -0.12 -6.83 16 7 N -0.61 -6.75 3.00 -172.20 -0.52 -7.27 16 8 C 0.11 1.27 6.49 -3.36 -0.02 1.25 16 9 C 0.04 0.53 5.27 -3.46 -0.02 0.51 16 10 N -0.51 -7.49 4.37 -235.50 -1.03 -8.52 16 11 C 0.04 0.68 5.45 -4.98 -0.03 0.65 16 12 C 0.45 9.61 7.44 -10.99 -0.08 9.53 16 13 O -0.56 -13.90 13.91 5.55 0.08 -13.83 16 14 N -0.59 -13.41 5.09 -10.96 -0.06 -13.47 16 15 C -0.31 -8.32 10.16 -14.93 -0.15 -8.48 16 16 H 0.12 3.74 7.39 -52.49 -0.39 3.35 16 17 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 18 N -0.88 -25.10 13.96 55.50 0.77 -24.32 16 19 Si 0.88 18.83 27.74 -169.99 -4.71 14.11 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.25 6.52 56.52 0.37 -4.88 16 23 C 0.04 0.47 5.62 -3.72 -0.02 0.45 16 24 C 0.12 1.30 6.59 -3.62 -0.02 1.28 16 25 C -0.17 -1.63 4.03 -90.62 -0.37 -1.99 16 26 C -0.14 -1.38 7.94 -26.73 -0.21 -1.59 16 27 C -0.18 -1.62 9.61 -26.73 -0.26 -1.87 16 28 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.52 7.13 -51.93 -0.37 0.15 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.38 4.28 5.33 45.56 0.24 4.52 16 32 H 0.10 0.75 7.92 -51.93 -0.41 0.34 16 33 H 0.10 0.81 7.71 -51.93 -0.40 0.41 16 34 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 0.75 6.04 -51.93 -0.31 0.44 16 36 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.12 1.98 5.76 -51.93 -0.30 1.68 16 38 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.09 1.24 7.97 -51.93 -0.41 0.83 16 40 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 41 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.09 0.87 7.99 -51.93 -0.41 0.46 16 44 H 0.09 1.02 7.06 -51.93 -0.37 0.65 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 46 H 0.10 0.95 8.11 -51.93 -0.42 0.52 16 47 H 0.10 1.02 6.29 -51.93 -0.33 0.70 16 48 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.09 0.83 7.59 -51.93 -0.39 0.44 16 LS Contribution 385.66 15.07 5.81 5.81 Total: -1.00 -31.71 385.66 -9.10 -40.81 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -7.48 Total: 14.80 kcal Atomic # 6 Polarization: 6.77 SS G_CDS: -1.21 Total: 5.57 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.83 Total: -53.58 kcal Atomic # 8 Polarization: -26.84 SS G_CDS: -0.68 Total: -27.52 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -4.71 Total: 14.11 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.71 -9.10 -40.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112769294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.075 kcal (2) G-P(sol) polarization free energy of solvation -31.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds