Wall clock time and date at job start Tue Mar 31 2020 23:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42897 * 109.47396 * 2 1 4 4 C 1.53008 * 109.46895 * 119.99919 * 2 1 3 5 5 C 1.50703 * 109.46904 * 180.63837 * 4 2 1 6 6 O 1.21280 * 120.00062 * 354.47109 * 5 4 2 7 7 N 1.34769 * 119.99633 * 174.46659 * 5 4 2 8 8 C 1.47086 * 120.88575 * 359.72448 * 7 5 4 9 9 C 1.53696 * 108.27631 * 128.75297 * 8 7 5 10 10 N 1.46899 * 109.25796 * 54.08555 * 9 8 7 11 11 C 1.46901 * 110.99636 * 172.60505 * 10 9 8 12 12 C 1.50700 * 109.47244 * 294.29702 * 11 10 9 13 13 O 1.21292 * 119.99860 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99740 * 179.97438 * 12 11 10 15 15 C 1.37102 * 119.99904 * 180.02562 * 14 12 11 16 16 H 1.07996 * 119.99919 * 0.02562 * 15 14 12 17 17 C 1.38950 * 120.00195 * 179.97438 * 15 14 12 18 18 N 1.31412 * 120.00015 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99867 * 0.02562 * 17 15 14 20 20 H 1.48506 * 109.47261 * 89.99589 * 19 17 15 21 21 H 1.48501 * 109.46823 * 209.99825 * 19 17 15 22 22 H 1.48500 * 109.46934 * 329.99590 * 19 17 15 23 23 C 1.46898 * 111.26860 * 296.75456 * 10 9 8 24 24 C 1.47078 * 120.88196 * 179.97438 * 7 5 4 25 25 C 1.52993 * 109.47077 * 239.99703 * 2 1 3 26 26 C 1.53002 * 117.49890 * 128.62533 * 25 2 1 27 27 C 1.52998 * 117.49908 * 60.00078 * 25 2 1 28 28 H 1.09007 * 109.46666 * 304.80237 * 1 2 3 29 29 H 1.09001 * 109.47073 * 64.80017 * 1 2 3 30 30 H 1.08995 * 109.47578 * 184.80282 * 1 2 3 31 31 H 0.96698 * 114.00015 * 179.97438 * 3 2 1 32 32 H 1.08994 * 109.46878 * 60.63756 * 4 2 1 33 33 H 1.09000 * 109.46811 * 300.64233 * 4 2 1 34 34 H 1.09001 * 109.62548 * 248.52361 * 8 7 5 35 35 H 1.08998 * 109.62497 * 9.10113 * 8 7 5 36 36 H 1.08997 * 109.64499 * 294.07435 * 9 8 7 37 37 H 1.09004 * 109.41730 * 173.95327 * 9 8 7 38 38 H 1.08997 * 109.46997 * 54.30616 * 11 10 9 39 39 H 1.09000 * 109.46540 * 174.30252 * 11 10 9 40 40 H 0.96999 * 120.00338 * 0.02562 * 14 12 11 41 41 H 0.96996 * 119.99845 * 180.02562 * 18 17 15 42 42 H 1.09006 * 109.49265 * 303.14711 * 23 10 9 43 43 H 1.08993 * 109.49621 * 183.06492 * 23 10 9 44 44 H 1.09003 * 109.62791 * 350.90093 * 24 7 5 45 45 H 1.08997 * 109.62973 * 111.47768 * 24 7 5 46 46 H 1.09002 * 115.55015 * 274.33277 * 25 2 1 47 47 H 1.08999 * 117.49615 * 0.02562 * 26 25 2 48 48 H 1.08997 * 117.50133 * 145.02383 * 26 25 2 49 49 H 1.09003 * 117.50121 * 214.98079 * 27 25 2 50 50 H 1.09003 * 117.50151 * 0.02562 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5469 -0.7076 1.2573 6 8 4.1544 -0.2635 0.3061 7 7 4.2195 -1.1888 2.3214 8 6 3.5025 -1.7263 3.4878 9 6 4.0723 -3.1181 3.8045 10 7 5.5295 -3.0206 3.9628 11 6 6.0936 -4.2911 4.4377 12 6 5.5924 -4.5738 5.8306 13 8 4.8391 -3.7938 6.3739 14 7 5.9806 -5.6937 6.4720 15 6 5.5243 -5.9511 7.7389 16 1 4.8535 -5.2567 8.2227 17 6 5.9240 -7.1061 8.4001 18 7 5.4870 -7.3526 9.6146 19 14 7.0837 -8.3076 7.5629 20 1 8.4881 -7.9400 7.8760 21 1 6.8107 -9.6824 8.0534 22 1 6.8743 -8.2556 6.0936 23 6 6.1737 -2.5927 2.7138 24 6 5.6900 -1.1854 2.3496 25 6 2.0400 -0.7213 -1.2491 26 6 3.0742 0.0051 -2.1116 27 6 1.6357 -0.1496 -2.6095 28 1 -0.3633 0.5866 0.8439 29 1 -0.3633 0.4376 -0.9299 30 1 -0.3634 -1.0240 0.0860 31 1 2.9704 1.4235 0.0004 32 1 1.6860 -1.7521 1.2436 33 1 1.6672 -0.2141 2.1392 34 1 3.6462 -1.0652 4.3424 35 1 2.4399 -1.8076 3.2587 36 1 3.8399 -3.8034 2.9893 37 1 3.6300 -3.4890 4.7291 38 1 5.7869 -5.0967 3.7706 39 1 7.1814 -4.2236 4.4497 40 1 6.5828 -6.3176 6.0373 41 1 5.7664 -8.1586 10.0763 42 1 5.9121 -3.2853 1.9138 43 1 7.2554 -2.5824 2.8474 44 1 6.0744 -0.9090 1.3678 45 1 6.0403 -0.4734 3.0968 46 1 2.1266 -1.8045 -1.1641 47 1 3.3915 0.9966 -1.7887 48 1 3.8416 -0.6002 -2.5941 49 1 1.4568 -0.8567 -3.4196 50 1 1.0068 0.7406 -2.6146 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112769294.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:55 Heat of formation + Delta-G solvation = -96.480827 kcal Electronic energy + Delta-G solvation = -30499.103807 eV Core-core repulsion = 26333.843394 eV Total energy + Delta-G solvation = -4165.260414 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.66875 -40.61762 -39.65986 -38.33155 -36.07398 -35.90994 -35.42844 -33.73090 -33.30147 -32.11315 -30.41714 -29.03251 -27.24727 -25.32593 -24.86824 -24.13324 -23.10203 -22.29628 -21.26561 -20.85085 -20.24953 -19.88382 -18.33603 -17.80856 -17.72084 -17.29234 -16.82872 -16.80768 -16.37895 -16.20822 -15.91987 -15.54268 -15.50750 -15.17276 -14.98654 -14.96417 -14.39388 -14.24503 -13.92079 -13.79228 -13.66967 -13.38098 -13.19853 -13.07202 -13.00985 -12.83454 -12.79229 -12.41791 -12.37081 -12.23386 -12.20056 -12.16383 -11.96546 -11.92927 -11.44935 -11.33687 -11.16855 -10.75690 -10.46677 -10.40074 -10.21778 -9.74517 -9.21454 -8.39587 -5.99807 1.30685 1.36214 1.44686 1.59206 1.93071 1.98005 2.23770 2.59980 2.95923 3.15476 3.20886 3.29732 3.44959 3.69647 3.80123 3.88819 3.99245 4.08814 4.12235 4.19994 4.20780 4.28243 4.34090 4.41323 4.44100 4.47242 4.51410 4.60219 4.65415 4.74015 4.75752 4.83718 4.85327 4.91198 4.93570 4.98759 5.06418 5.15771 5.30416 5.32758 5.36620 5.44061 5.54121 5.84952 5.99562 6.12503 6.38463 6.61386 6.73542 6.90644 7.14434 7.42202 7.98687 8.77807 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.002138 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.425739 B =13090.338888 C =13374.536441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.174 3.826 3 O -0.575 6.575 4 C -0.166 4.166 5 C 0.515 3.485 6 O -0.558 6.558 7 N -0.611 5.611 8 C 0.121 3.879 9 C 0.041 3.959 10 N -0.535 5.535 11 C 0.055 3.945 12 C 0.453 3.547 13 O -0.601 6.601 14 N -0.593 5.593 15 C -0.323 4.323 16 H 0.058 0.942 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.963 3.037 20 H -0.259 1.259 21 H -0.277 1.277 22 H -0.232 1.232 23 C 0.048 3.952 24 C 0.119 3.881 25 C -0.172 4.172 26 C -0.149 4.149 27 C -0.175 4.175 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.089 0.911 31 H 0.381 0.619 32 H 0.121 0.879 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.112 0.888 36 H 0.040 0.960 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.388 0.612 41 H 0.278 0.722 42 H 0.041 0.959 43 H 0.105 0.895 44 H 0.098 0.902 45 H 0.071 0.929 46 H 0.101 0.899 47 H 0.086 0.914 48 H 0.082 0.918 49 H 0.099 0.901 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.403 9.576 -24.638 26.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.133 3.867 3 O -0.385 6.385 4 C -0.206 4.206 5 C 0.305 3.695 6 O -0.438 6.438 7 N -0.344 5.344 8 C -0.002 4.002 9 C -0.088 4.088 10 N -0.261 5.261 11 C -0.076 4.076 12 C 0.241 3.759 13 O -0.485 6.485 14 N -0.235 5.235 15 C -0.452 4.452 16 H 0.076 0.924 17 C -0.215 4.215 18 N -0.576 5.576 19 Si 0.783 3.217 20 H -0.183 1.183 21 H -0.203 1.203 22 H -0.155 1.155 23 C -0.080 4.080 24 C -0.004 4.004 25 C -0.191 4.191 26 C -0.186 4.186 27 C -0.211 4.211 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.107 0.893 31 H 0.234 0.766 32 H 0.139 0.861 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.140 0.860 40 H 0.224 0.776 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.123 0.877 44 H 0.116 0.884 45 H 0.089 0.911 46 H 0.119 0.881 47 H 0.104 0.896 48 H 0.100 0.900 49 H 0.118 0.882 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.131 10.701 -24.242 26.819 hybrid contribution 1.109 -1.719 0.062 2.046 sum -3.022 8.982 -24.180 25.971 Atomic orbital electron populations 1.21773 0.90830 1.03620 1.03091 1.20495 0.94790 0.81014 0.90371 1.86426 1.28485 1.26842 1.96795 1.22542 0.91258 1.05091 1.01707 1.20979 0.90820 0.76487 0.81217 1.90632 1.70764 1.47791 1.34631 1.48314 1.07342 1.61232 1.17504 1.21934 0.97060 0.93613 0.87594 1.22612 0.88190 0.96939 1.01044 1.61450 1.04682 1.29610 1.30331 1.21812 1.01915 0.92038 0.91818 1.20810 0.84097 0.81744 0.89272 1.90512 1.39753 1.48650 1.69596 1.42060 1.45068 1.21532 1.14868 1.18984 1.27809 1.07119 0.91327 0.92392 1.26087 0.99751 0.99366 0.96285 1.69801 1.45946 1.28065 1.13747 0.85393 0.78623 0.77576 0.80100 1.18314 1.20269 1.15485 1.22528 1.00500 0.95812 0.89178 1.21666 0.79340 0.96582 1.02789 1.22841 1.05068 0.99028 0.92123 1.22597 0.91862 1.01583 1.02593 1.23026 0.98368 1.03090 0.96664 0.91636 0.91725 0.89257 0.76645 0.86052 0.87118 0.91255 0.86998 0.94228 0.90312 0.90707 0.86045 0.77633 0.91251 0.94062 0.87665 0.88362 0.91109 0.88074 0.89553 0.89953 0.88241 0.88995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 8.75 71.98 0.63 -1.18 16 2 C 0.17 2.91 0.92 -10.79 -0.01 2.90 16 3 O -0.57 -12.24 12.10 -132.77 -1.61 -13.84 16 4 C -0.17 -2.50 3.33 29.85 0.10 -2.40 16 5 C 0.51 10.23 7.20 87.66 0.63 10.86 16 6 O -0.56 -13.06 10.83 13.18 0.14 -12.92 16 7 N -0.61 -12.40 3.00 -817.13 -2.45 -14.85 16 8 C 0.12 2.56 6.49 86.50 0.56 3.12 16 9 C 0.04 1.08 5.27 86.54 0.46 1.54 16 10 N -0.54 -14.48 4.37 -898.97 -3.93 -18.41 16 11 C 0.06 1.56 5.45 85.56 0.47 2.02 16 12 C 0.45 19.14 7.44 87.66 0.65 19.79 16 13 O -0.60 -30.90 13.91 -3.07 -0.04 -30.94 16 14 N -0.59 -26.70 5.09 -306.99 -1.56 -28.26 16 15 C -0.32 -18.29 10.16 84.04 0.85 -17.44 16 16 H 0.06 3.91 7.39 -2.91 -0.02 3.89 16 17 C -0.02 -0.89 5.50 84.93 0.47 -0.42 16 18 N -0.93 -55.36 13.96 21.66 0.30 -55.06 16 19 Si 0.96 37.79 27.74 68.60 1.90 39.69 16 20 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 21 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.23 -7.57 6.52 99.48 0.65 -6.92 16 23 C 0.05 0.95 5.62 86.37 0.49 1.43 16 24 C 0.12 2.38 6.59 86.34 0.57 2.95 16 25 C -0.17 -2.96 4.03 -10.80 -0.04 -3.00 16 26 C -0.15 -2.84 7.94 30.60 0.24 -2.60 16 27 C -0.17 -2.80 9.61 30.60 0.29 -2.50 16 28 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.06 0.89 7.13 -2.39 -0.02 0.87 16 30 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.38 8.38 5.33 -74.06 -0.39 7.98 16 32 H 0.12 1.38 7.92 -2.39 -0.02 1.36 16 33 H 0.11 1.49 7.71 -2.39 -0.02 1.48 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.67 16 35 H 0.11 1.73 6.04 -2.39 -0.01 1.72 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 2.73 5.76 -2.38 -0.01 2.71 16 38 H 0.08 1.78 8.12 -2.39 -0.02 1.76 16 39 H 0.12 2.76 7.97 -2.39 -0.02 2.74 16 40 H 0.39 14.46 5.76 -92.71 -0.53 13.92 16 41 H 0.28 15.09 8.31 -92.71 -0.77 14.32 16 42 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 43 H 0.11 1.71 7.99 -2.39 -0.02 1.69 16 44 H 0.10 1.92 7.06 -2.39 -0.02 1.91 16 45 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 46 H 0.10 1.70 8.11 -2.39 -0.02 1.68 16 47 H 0.09 1.82 6.29 -2.39 -0.02 1.80 16 48 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 49 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 50 H 0.09 1.51 7.59 -2.39 -0.02 1.49 16 Total: -1.00 -73.96 385.66 -0.91 -74.88 By element: Atomic # 1 Polarization: 44.66 SS G_CDS: -0.02 Total: 44.64 kcal Atomic # 6 Polarization: 8.72 SS G_CDS: 6.36 Total: 15.08 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -7.64 Total: -116.59 kcal Atomic # 8 Polarization: -56.20 SS G_CDS: -1.51 Total: -57.70 kcal Atomic # 14 Polarization: 37.79 SS G_CDS: 1.90 Total: 39.69 kcal Total: -73.96 -0.91 -74.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112769294.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.602 kcal (2) G-P(sol) polarization free energy of solvation -73.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds