Wall clock time and date at job start Tue Mar 31 2020 23:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 H 1.09001 * 110.27757 * 304.37034 * 3 2 1 5 5 C 1.54940 * 110.31054 * 182.16750 * 3 2 1 6 6 C 1.55456 * 100.98875 * 204.69204 * 5 3 2 7 7 C 1.54373 * 102.18634 * 34.04139 * 6 5 3 8 8 H 1.08995 * 109.83453 * 98.30179 * 7 6 5 9 9 C 1.50699 * 109.83050 * 219.18415 * 7 6 5 10 10 O 1.21276 * 120.00162 * 114.81555 * 9 7 6 11 11 N 1.34778 * 119.99865 * 294.53798 * 9 7 6 12 12 C 1.47085 * 120.88188 * 359.97438 * 11 9 7 13 13 C 1.53691 * 108.27722 * 128.75505 * 12 11 9 14 14 N 1.46900 * 109.25722 * 54.08345 * 13 12 11 15 15 C 1.46903 * 111.00092 * 172.60464 * 14 13 12 16 16 C 1.50704 * 109.46893 * 59.56240 * 15 14 13 17 17 O 1.21296 * 119.99805 * 5.59698 * 16 15 14 18 18 N 1.34772 * 119.99697 * 185.59672 * 16 15 14 19 19 C 1.37103 * 119.99617 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99805 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99854 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47055 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47187 * 119.99753 * 23 21 19 26 26 H 1.48496 * 109.47136 * 239.99952 * 23 21 19 27 27 C 1.46897 * 111.26867 * 296.75795 * 14 13 12 28 28 C 1.47076 * 120.88343 * 180.27753 * 11 9 7 29 29 O 1.43242 * 107.66320 * 338.73946 * 7 6 5 30 30 H 1.08996 * 109.47247 * 299.99571 * 1 2 3 31 31 H 1.08995 * 109.47571 * 59.99822 * 1 2 3 32 32 H 1.08997 * 109.46680 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47247 * 240.00429 * 2 1 3 34 34 H 1.08995 * 109.47571 * 120.00178 * 2 1 3 35 35 H 1.09002 * 111.12838 * 322.56103 * 5 3 2 36 36 H 1.09004 * 111.12942 * 86.68310 * 5 3 2 37 37 H 1.09004 * 110.83147 * 275.88989 * 6 5 3 38 38 H 1.09003 * 110.92102 * 152.23238 * 6 5 3 39 39 H 1.08996 * 109.63047 * 248.52987 * 12 11 9 40 40 H 1.09002 * 109.62252 * 9.10616 * 12 11 9 41 41 H 1.08999 * 109.64788 * 294.08174 * 13 12 11 42 42 H 1.08998 * 109.44642 * 173.96391 * 13 12 11 43 43 H 1.08999 * 109.46784 * 179.55787 * 15 14 13 44 44 H 1.08997 * 109.47196 * 299.56511 * 15 14 13 45 45 H 0.96991 * 120.00494 * 359.97438 * 18 16 15 46 46 H 0.96993 * 120.00154 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.49519 * 303.13906 * 27 14 13 48 48 H 1.09005 * 109.48997 * 183.06227 * 27 14 13 49 49 H 1.08997 * 109.63145 * 350.89472 * 28 11 9 50 50 H 1.09003 * 109.63215 * 111.47198 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9911 -0.8439 5 6 3.5882 1.4656 -0.0550 6 6 3.8870 2.8482 0.5898 7 6 2.7560 2.9726 1.6331 8 1 3.1268 2.6843 2.6166 9 6 2.2513 4.3919 1.6732 10 8 1.1152 4.6414 1.3298 11 7 3.0606 5.3833 2.0959 12 6 4.4396 5.1017 2.5230 13 6 5.3813 6.0557 1.7713 14 7 4.9371 7.4401 1.9812 15 6 5.9071 8.3940 1.4270 16 6 6.0661 8.1471 -0.0511 17 8 5.3609 7.3332 -0.6093 18 7 6.9918 8.8307 -0.7527 19 6 7.1360 8.6064 -2.0976 20 1 6.5081 7.8817 -2.5946 21 6 8.0907 9.3107 -2.8209 22 7 8.8550 10.1921 -2.2161 23 14 8.2877 9.0047 -4.6531 24 1 7.3148 7.9712 -5.0897 25 1 8.0372 10.2662 -5.3955 26 1 9.6682 8.5329 -4.9305 27 6 3.5992 7.6618 1.4168 28 6 2.5862 6.7744 2.1486 29 8 1.6988 2.0919 1.2350 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.0145 0.6565 0.5382 36 1 3.9455 1.4254 -1.0840 37 1 3.8201 3.6443 -0.1518 38 1 4.8635 2.8489 1.0742 39 1 4.5305 5.2634 3.5971 40 1 4.6937 4.0694 2.2826 41 1 5.3626 5.8253 0.7061 42 1 6.3962 5.9378 2.1511 43 1 5.5499 9.4110 1.5891 44 1 6.8691 8.2634 1.9227 45 1 7.5554 9.4817 -0.3065 46 1 9.5212 10.6840 -2.7210 47 1 3.6053 7.4091 0.3565 48 1 3.3214 8.7087 1.5400 49 1 1.6144 6.8487 1.6606 50 1 2.5026 7.0938 3.1875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112902146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:26 Heat of formation + Delta-G solvation = -104.764620 kcal Electronic energy + Delta-G solvation = -31032.546729 eV Core-core repulsion = 26866.927103 eV Total energy + Delta-G solvation = -4165.619626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.74104 -39.43970 -38.45168 -36.89919 -34.58083 -33.88937 -33.65784 -32.38390 -31.40335 -31.01928 -29.29256 -28.26467 -25.79220 -24.51971 -23.81340 -23.29370 -22.04631 -21.47435 -20.72579 -19.51535 -18.81925 -17.96634 -17.68437 -16.52790 -16.38127 -16.12089 -15.77483 -15.08908 -14.96954 -14.74461 -14.59005 -14.34060 -14.16735 -13.97167 -13.71913 -13.70488 -13.50878 -13.31865 -13.15453 -12.81534 -12.28233 -12.13860 -11.94501 -11.85211 -11.67561 -11.58426 -11.51277 -11.32421 -11.20922 -11.06585 -10.98678 -10.86501 -10.76390 -10.66965 -10.43422 -10.33585 -10.22221 -9.56846 -9.33824 -9.23082 -8.59596 -8.08059 -7.51710 -6.53083 -3.94584 2.65173 2.86419 3.07187 3.19518 3.26013 3.66947 3.73827 4.08015 4.15541 4.25060 4.37151 4.46122 4.75758 4.84641 4.90328 4.93193 4.99030 5.08621 5.10187 5.19617 5.20779 5.24809 5.31670 5.46844 5.50640 5.58066 5.58792 5.63313 5.64403 5.72321 5.74804 5.80658 5.86068 5.90472 5.95426 6.00769 6.02144 6.13673 6.15341 6.42685 6.53948 6.62286 6.80860 7.16092 7.29635 7.44041 7.49303 7.93241 8.25389 8.47345 9.05347 9.40974 9.91055 10.63398 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.002874 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.581971 B = 9739.503440 C =11195.430325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C 0.076 3.924 4 H 0.073 0.927 5 C -0.150 4.150 6 C -0.148 4.148 7 C 0.069 3.931 8 H 0.103 0.897 9 C 0.504 3.496 10 O -0.530 6.530 11 N -0.605 5.605 12 C 0.107 3.893 13 C 0.023 3.977 14 N -0.513 5.513 15 C 0.042 3.958 16 C 0.404 3.596 17 O -0.594 6.594 18 N -0.555 5.555 19 C -0.302 4.302 20 H 0.103 0.897 21 C 0.025 3.975 22 N -0.897 5.897 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.281 1.281 27 C 0.025 3.975 28 C 0.121 3.879 29 O -0.347 6.347 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.393 0.607 46 H 0.273 0.727 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.090 0.910 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 -14.237 9.812 18.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C 0.019 3.981 4 H 0.091 0.909 5 C -0.188 4.188 6 C -0.186 4.186 7 C 0.007 3.993 8 H 0.120 0.880 9 C 0.291 3.709 10 O -0.406 6.406 11 N -0.340 5.340 12 C -0.016 4.016 13 C -0.106 4.106 14 N -0.236 5.236 15 C -0.090 4.090 16 C 0.190 3.810 17 O -0.482 6.482 18 N -0.190 5.190 19 C -0.432 4.432 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.104 4.104 28 C -0.001 4.001 29 O -0.265 6.265 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.226 0.774 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.108 0.892 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.873 -14.483 9.793 19.174 hybrid contribution 1.033 0.508 -1.584 1.958 sum -6.840 -13.975 8.210 17.592 Atomic orbital electron populations 1.21717 0.95184 1.01274 1.02647 1.21642 0.97000 0.94457 1.02508 1.23129 0.93734 0.93694 0.87584 0.90915 1.23352 0.95766 0.97072 1.02577 1.23250 0.98197 0.98792 0.98322 1.22570 0.88242 0.88336 1.00126 0.87959 1.20946 0.85724 0.87160 0.77104 1.90678 1.18681 1.83689 1.47581 1.48082 1.13344 1.07651 1.64968 1.22130 0.80654 0.99480 0.99306 1.22755 0.97379 0.88406 1.02038 1.62440 1.02075 1.03380 1.55688 1.22058 0.97232 0.97387 0.92330 1.21077 0.84524 0.85913 0.89526 1.90420 1.47842 1.38406 1.71496 1.42063 1.31811 1.35934 1.09163 1.19749 1.17933 1.21896 0.83641 0.87949 1.25293 0.95911 0.95884 1.00691 1.69609 1.21968 1.24998 1.37179 0.85813 0.78231 0.78396 0.82000 1.19243 1.20627 1.20647 1.22691 0.88219 0.99087 1.00381 1.21700 0.98144 0.79521 1.00752 1.88502 1.41026 1.57269 1.39701 0.91857 0.92774 0.92928 0.90718 0.91253 0.89958 0.89393 0.89348 0.88695 0.90941 0.89645 0.90020 0.90529 0.89165 0.89251 0.77357 0.91746 0.90094 0.90558 0.89169 0.91386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.83 37.16 0.37 -1.03 16 2 C -0.12 -1.04 5.68 -26.73 -0.15 -1.19 16 3 C 0.08 0.84 3.43 -25.71 -0.09 0.75 16 4 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 5 C -0.15 -1.36 6.57 -24.40 -0.16 -1.52 16 6 C -0.15 -1.58 5.39 -24.71 -0.13 -1.71 16 7 C 0.07 0.84 3.06 -27.16 -0.08 0.76 16 8 H 0.10 1.01 7.79 -51.93 -0.40 0.61 16 9 C 0.50 7.86 6.97 -10.99 -0.08 7.78 16 10 O -0.53 -10.38 15.98 -14.09 -0.23 -10.60 16 11 N -0.60 -8.58 3.00 -172.16 -0.52 -9.10 16 12 C 0.11 1.25 6.19 -3.36 -0.02 1.23 16 13 C 0.02 0.33 5.14 -3.47 -0.02 0.31 16 14 N -0.51 -7.83 4.83 -235.45 -1.14 -8.96 16 15 C 0.04 0.68 5.84 -4.97 -0.03 0.65 16 16 C 0.40 8.75 7.18 -10.99 -0.08 8.67 16 17 O -0.59 -14.50 11.25 5.54 0.06 -14.43 16 18 N -0.55 -13.29 5.29 -10.96 -0.06 -13.35 16 19 C -0.30 -8.09 9.68 -14.93 -0.14 -8.23 16 20 H 0.10 2.90 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -23.64 13.05 55.50 0.72 -22.92 16 23 Si 0.93 20.48 29.55 -169.99 -5.02 15.45 16 24 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.02 0.39 5.21 -3.68 -0.02 0.37 16 28 C 0.12 1.76 6.60 -3.59 -0.02 1.73 16 29 O -0.35 -4.77 9.90 -54.88 -0.54 -5.31 16 30 H 0.06 0.68 7.91 -51.93 -0.41 0.27 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.08 0.61 8.06 -51.93 -0.42 0.19 16 36 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 1.18 7.84 -51.93 -0.41 0.77 16 38 H 0.09 0.81 6.64 -51.93 -0.34 0.46 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.80 4.02 -51.93 -0.21 0.59 16 41 H 0.08 1.49 5.72 -51.93 -0.30 1.19 16 42 H 0.08 1.00 8.11 -51.93 -0.42 0.58 16 43 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 44 H 0.09 1.31 8.14 -51.93 -0.42 0.88 16 45 H 0.39 9.07 7.90 -40.82 -0.32 8.74 16 46 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 47 H 0.08 1.62 5.74 -51.93 -0.30 1.33 16 48 H 0.08 1.13 8.06 -51.93 -0.42 0.71 16 49 H 0.09 1.41 7.06 -51.93 -0.37 1.04 16 50 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -32.35 388.09 -9.68 -42.03 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -8.05 Total: 12.24 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -0.76 Total: 9.11 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.99 Total: -54.33 kcal Atomic # 8 Polarization: -29.64 SS G_CDS: -0.71 Total: -30.35 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.35 -9.68 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112902146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.735 kcal (2) G-P(sol) polarization free energy of solvation -32.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.030 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds