Wall clock time and date at job start Tue Mar 31 2020 23:29:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.47006 * 2 1 4 4 H 1.09001 * 110.27757 * 304.37034 * 3 2 1 5 5 C 1.54940 * 110.31054 * 182.16750 * 3 2 1 6 6 C 1.55456 * 100.98875 * 204.69204 * 5 3 2 7 7 C 1.54373 * 102.18634 * 34.04139 * 6 5 3 8 8 H 1.08995 * 109.83453 * 98.30179 * 7 6 5 9 9 C 1.50699 * 109.83050 * 219.18415 * 7 6 5 10 10 O 1.21276 * 120.00162 * 114.81555 * 9 7 6 11 11 N 1.34778 * 119.99865 * 294.53798 * 9 7 6 12 12 C 1.47085 * 120.88188 * 359.97438 * 11 9 7 13 13 C 1.53691 * 108.27722 * 128.75505 * 12 11 9 14 14 N 1.46900 * 109.25722 * 54.08345 * 13 12 11 15 15 C 1.46903 * 111.00092 * 172.60464 * 14 13 12 16 16 C 1.50704 * 109.46893 * 59.56240 * 15 14 13 17 17 O 1.21296 * 119.99805 * 5.59698 * 16 15 14 18 18 N 1.34772 * 119.99697 * 185.59672 * 16 15 14 19 19 C 1.37103 * 119.99617 * 180.02562 * 18 16 15 20 20 H 1.07998 * 119.99805 * 359.97438 * 19 18 16 21 21 C 1.38953 * 119.99854 * 180.02562 * 19 18 16 22 22 N 1.31407 * 119.99954 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99952 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47055 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.47187 * 119.99753 * 23 21 19 26 26 H 1.48496 * 109.47136 * 239.99952 * 23 21 19 27 27 C 1.46897 * 111.26867 * 296.75795 * 14 13 12 28 28 C 1.47076 * 120.88343 * 180.27753 * 11 9 7 29 29 O 1.43242 * 107.66320 * 338.73946 * 7 6 5 30 30 H 1.08996 * 109.47247 * 299.99571 * 1 2 3 31 31 H 1.08995 * 109.47571 * 59.99822 * 1 2 3 32 32 H 1.08997 * 109.46680 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47247 * 240.00429 * 2 1 3 34 34 H 1.08995 * 109.47571 * 120.00178 * 2 1 3 35 35 H 1.09002 * 111.12838 * 322.56103 * 5 3 2 36 36 H 1.09004 * 111.12942 * 86.68310 * 5 3 2 37 37 H 1.09004 * 110.83147 * 275.88989 * 6 5 3 38 38 H 1.09003 * 110.92102 * 152.23238 * 6 5 3 39 39 H 1.08996 * 109.63047 * 248.52987 * 12 11 9 40 40 H 1.09002 * 109.62252 * 9.10616 * 12 11 9 41 41 H 1.08999 * 109.64788 * 294.08174 * 13 12 11 42 42 H 1.08998 * 109.44642 * 173.96391 * 13 12 11 43 43 H 1.08999 * 109.46784 * 179.55787 * 15 14 13 44 44 H 1.08997 * 109.47196 * 299.56511 * 15 14 13 45 45 H 0.96991 * 120.00494 * 359.97438 * 18 16 15 46 46 H 0.96993 * 120.00154 * 180.02562 * 22 21 19 47 47 H 1.08998 * 109.49519 * 303.13906 * 27 14 13 48 48 H 1.09005 * 109.48997 * 183.06227 * 27 14 13 49 49 H 1.08997 * 109.63145 * 350.89472 * 28 11 9 50 50 H 1.09003 * 109.63215 * 111.47198 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6217 1.9911 -0.8439 5 6 3.5882 1.4656 -0.0550 6 6 3.8870 2.8482 0.5898 7 6 2.7560 2.9726 1.6331 8 1 3.1268 2.6843 2.6166 9 6 2.2513 4.3919 1.6732 10 8 1.1152 4.6414 1.3298 11 7 3.0606 5.3833 2.0959 12 6 4.4396 5.1017 2.5230 13 6 5.3813 6.0557 1.7713 14 7 4.9371 7.4401 1.9812 15 6 5.9071 8.3940 1.4270 16 6 6.0661 8.1471 -0.0511 17 8 5.3609 7.3332 -0.6093 18 7 6.9918 8.8307 -0.7527 19 6 7.1360 8.6064 -2.0976 20 1 6.5081 7.8817 -2.5946 21 6 8.0907 9.3107 -2.8209 22 7 8.8550 10.1921 -2.2161 23 14 8.2877 9.0047 -4.6531 24 1 7.3148 7.9712 -5.0897 25 1 8.0372 10.2662 -5.3955 26 1 9.6682 8.5329 -4.9305 27 6 3.5992 7.6618 1.4168 28 6 2.5862 6.7744 2.1486 29 8 1.6988 2.0919 1.2350 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 4.0145 0.6565 0.5382 36 1 3.9455 1.4254 -1.0840 37 1 3.8201 3.6443 -0.1518 38 1 4.8635 2.8489 1.0742 39 1 4.5305 5.2634 3.5971 40 1 4.6937 4.0694 2.2826 41 1 5.3626 5.8253 0.7061 42 1 6.3962 5.9378 2.1511 43 1 5.5499 9.4110 1.5891 44 1 6.8691 8.2634 1.9227 45 1 7.5554 9.4817 -0.3065 46 1 9.5212 10.6840 -2.7210 47 1 3.6053 7.4091 0.3565 48 1 3.3214 8.7087 1.5400 49 1 1.6144 6.8487 1.6606 50 1 2.5026 7.0938 3.1875 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112902146.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:25 Heat of formation + Delta-G solvation = -127.985453 kcal Electronic energy + Delta-G solvation = -31033.553659 eV Core-core repulsion = 26866.927103 eV Total energy + Delta-G solvation = -4166.626557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.84511 -40.80738 -39.73729 -38.32920 -36.17614 -35.33834 -34.61518 -33.38778 -33.28100 -32.11911 -30.46924 -29.38583 -27.36849 -25.79060 -25.06800 -24.43426 -22.89509 -22.53784 -21.73462 -21.14457 -20.20867 -19.67324 -18.78080 -17.82898 -17.55295 -17.35815 -16.92210 -16.56903 -16.24232 -16.19123 -16.07146 -15.71579 -15.43202 -15.19760 -15.06479 -14.94927 -14.48360 -14.32834 -14.09922 -13.94720 -13.60990 -13.42714 -13.21341 -13.04676 -12.99874 -12.84580 -12.71130 -12.48366 -12.45235 -12.28344 -12.18278 -12.12924 -12.06280 -11.92447 -11.79768 -11.51626 -11.40527 -11.24129 -10.99304 -10.34157 -10.01146 -9.81251 -9.03081 -8.48839 -5.98268 1.31914 1.38487 1.47068 1.51283 1.78926 2.00134 2.26175 2.76012 2.94897 3.17550 3.24493 3.28556 3.45158 3.65301 3.88580 3.90936 4.01303 4.05715 4.14932 4.17408 4.26366 4.33166 4.34738 4.41834 4.43681 4.52176 4.59552 4.60614 4.68672 4.70302 4.75530 4.77172 4.83180 4.88282 4.96368 5.05563 5.09052 5.11055 5.24156 5.27525 5.39302 5.40180 5.42664 5.80003 5.90510 5.99024 6.01533 6.35643 6.56652 7.06935 7.09924 7.53676 8.08784 8.66648 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012773 B = 0.002874 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2191.581971 B = 9739.503440 C =11195.430325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.066 3.934 4 H 0.046 0.954 5 C -0.139 4.139 6 C -0.145 4.145 7 C 0.070 3.930 8 H 0.138 0.862 9 C 0.493 3.507 10 O -0.584 6.584 11 N -0.606 5.606 12 C 0.111 3.889 13 C 0.021 3.979 14 N -0.497 5.497 15 C 0.050 3.950 16 C 0.407 3.593 17 O -0.623 6.623 18 N -0.569 5.569 19 C -0.330 4.330 20 H 0.075 0.925 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.988 3.012 24 H -0.276 1.276 25 H -0.273 1.273 26 H -0.269 1.269 27 C 0.031 3.969 28 C 0.125 3.875 29 O -0.371 6.371 30 H 0.041 0.959 31 H 0.044 0.956 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.111 0.889 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.124 0.876 39 H 0.102 0.898 40 H 0.111 0.889 41 H 0.040 0.960 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.118 0.882 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.033 0.967 48 H 0.088 0.912 49 H 0.070 0.930 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 -15.694 11.600 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.009 3.991 4 H 0.064 0.936 5 C -0.177 4.177 6 C -0.182 4.182 7 C 0.009 3.991 8 H 0.155 0.845 9 C 0.282 3.718 10 O -0.464 6.464 11 N -0.340 5.340 12 C -0.011 4.011 13 C -0.107 4.107 14 N -0.220 5.220 15 C -0.081 4.081 16 C 0.194 3.806 17 O -0.511 6.511 18 N -0.206 5.206 19 C -0.460 4.460 20 H 0.093 0.907 21 C -0.211 4.211 22 N -0.558 5.558 23 Si 0.812 3.188 24 H -0.201 1.201 25 H -0.198 1.198 26 H -0.194 1.194 27 C -0.098 4.098 28 C 0.002 3.998 29 O -0.289 6.289 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.100 0.900 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.142 0.858 39 H 0.120 0.880 40 H 0.129 0.871 41 H 0.059 0.941 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.052 0.948 48 H 0.106 0.894 49 H 0.089 0.911 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.207 -15.938 11.610 20.672 hybrid contribution 0.447 0.964 -2.112 2.365 sum -5.760 -14.973 9.497 18.644 Atomic orbital electron populations 1.21721 0.95984 1.02046 1.01168 1.21651 0.96291 0.92970 1.04067 1.23288 0.95377 0.94511 0.85929 0.93639 1.23365 0.94044 0.96811 1.03436 1.23235 0.98986 0.98628 0.97393 1.22766 0.88157 0.85957 1.02173 0.84467 1.21739 0.85211 0.88832 0.76000 1.90644 1.21066 1.84686 1.49956 1.48239 1.14300 1.07248 1.64163 1.22335 0.78227 1.00152 1.00344 1.22801 0.99477 0.88335 1.00138 1.62547 1.01344 1.03848 1.54226 1.22174 0.99052 0.98776 0.88115 1.22195 0.82617 0.84114 0.91683 1.90447 1.48392 1.39271 1.72969 1.42127 1.33004 1.36961 1.08498 1.19614 1.18631 1.22447 0.85324 0.90734 1.25974 0.95315 0.95477 1.04313 1.69659 1.22264 1.25368 1.38483 0.84949 0.78280 0.78178 0.77413 1.20131 1.19802 1.19405 1.22568 0.89319 1.00111 0.97759 1.21625 0.96715 0.79845 1.01629 1.88487 1.42336 1.57515 1.40582 0.93981 0.93649 0.90973 0.88625 0.90003 0.87025 0.88756 0.93039 0.85809 0.88037 0.87069 0.94139 0.88321 0.87226 0.86424 0.76948 0.91274 0.94823 0.89395 0.91141 0.88784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.83 71.98 0.71 -2.06 16 2 C -0.11 -1.80 5.68 30.59 0.17 -1.63 16 3 C 0.07 1.44 3.43 31.26 0.11 1.54 16 4 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 5 C -0.14 -2.27 6.57 32.10 0.21 -2.05 16 6 C -0.14 -2.91 5.39 31.91 0.17 -2.74 16 7 C 0.07 1.65 3.06 30.31 0.09 1.74 16 8 H 0.14 2.25 7.79 -2.39 -0.02 2.23 16 9 C 0.49 15.58 6.97 87.66 0.61 16.20 16 10 O -0.58 -24.08 15.98 15.77 0.25 -23.83 16 11 N -0.61 -16.76 3.00 -816.99 -2.45 -19.22 16 12 C 0.11 2.28 6.19 86.50 0.54 2.81 16 13 C 0.02 0.57 5.14 86.54 0.44 1.02 16 14 N -0.50 -14.30 4.83 -898.82 -4.34 -18.64 16 15 C 0.05 1.56 5.84 85.56 0.50 2.06 16 16 C 0.41 17.79 7.18 87.66 0.63 18.42 16 17 O -0.62 -31.58 11.25 -3.08 -0.03 -31.61 16 18 N -0.57 -27.72 5.29 -306.98 -1.62 -29.34 16 19 C -0.33 -18.17 9.68 84.04 0.81 -17.36 16 20 H 0.07 4.44 7.16 -2.91 -0.02 4.42 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.09 16 22 N -0.92 -48.24 13.05 21.66 0.28 -47.96 16 23 Si 0.99 42.26 29.55 68.60 2.03 44.29 16 24 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 27 C 0.03 1.00 5.21 86.40 0.45 1.45 16 28 C 0.12 3.59 6.60 86.36 0.57 4.16 16 29 O -0.37 -10.14 9.90 -130.19 -1.29 -11.43 16 30 H 0.04 0.93 7.91 -2.39 -0.02 0.91 16 31 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.11 1.22 8.06 -2.39 -0.02 1.20 16 36 H 0.09 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.05 1.43 7.84 -2.38 -0.02 1.41 16 38 H 0.12 1.72 6.64 -2.39 -0.02 1.71 16 39 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.11 1.69 4.02 -2.39 -0.01 1.69 16 41 H 0.04 1.48 5.72 -2.39 -0.01 1.47 16 42 H 0.10 2.26 8.11 -2.39 -0.02 2.24 16 43 H 0.11 3.04 8.07 -2.39 -0.02 3.02 16 44 H 0.12 3.06 8.14 -2.39 -0.02 3.04 16 45 H 0.40 18.38 7.90 -92.71 -0.73 17.65 16 46 H 0.28 13.68 8.31 -92.71 -0.77 12.91 16 47 H 0.03 1.42 5.74 -2.39 -0.01 1.40 16 48 H 0.09 2.56 8.06 -2.38 -0.02 2.54 16 49 H 0.07 2.31 7.06 -2.39 -0.02 2.30 16 50 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -75.35 388.09 -0.47 -75.82 By element: Atomic # 1 Polarization: 38.21 SS G_CDS: 0.22 Total: 38.43 kcal Atomic # 6 Polarization: 16.99 SS G_CDS: 6.49 Total: 23.48 kcal Atomic # 7 Polarization: -107.02 SS G_CDS: -8.13 Total: -115.15 kcal Atomic # 8 Polarization: -65.80 SS G_CDS: -1.07 Total: -66.87 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -75.35 -0.47 -75.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112902146.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.165 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds