Wall clock time and date at job start Tue Mar 31 2020 23:33:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47328 * 2 1 4 4 H 1.09005 * 110.42995 * 52.03562 * 3 2 1 5 5 C 1.54812 * 110.60344 * 289.41068 * 3 2 1 6 6 C 1.54994 * 102.09153 * 220.38261 * 5 3 2 7 7 O 1.44578 * 103.58364 * 36.94721 * 6 5 3 8 8 C 1.43743 * 106.87195 * 320.11789 * 7 6 5 9 9 H 1.09004 * 109.87434 * 266.83298 * 8 7 6 10 10 C 1.50699 * 109.88109 * 145.83147 * 8 7 6 11 11 O 1.21275 * 119.99886 * 341.63437 * 10 8 7 12 12 N 1.34779 * 119.99721 * 161.63182 * 10 8 7 13 13 C 1.47081 * 120.87746 * 174.61024 * 12 10 8 14 14 C 1.53239 * 108.68105 * 231.10831 * 13 12 10 15 15 N 1.46952 * 109.31224 * 306.46948 * 14 13 12 16 16 C 1.46897 * 110.96923 * 187.06138 * 15 14 13 17 17 C 1.50700 * 109.47173 * 65.49610 * 16 15 14 18 18 O 1.21291 * 119.99879 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00403 * 180.02562 * 17 16 15 20 20 C 1.37099 * 120.00431 * 179.97438 * 19 17 16 21 21 H 1.08003 * 119.99770 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00093 * 180.02562 * 20 19 17 23 23 N 1.31413 * 119.99983 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00032 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47277 * 90.00482 * 24 22 20 26 26 H 1.48506 * 109.47063 * 210.00609 * 24 22 20 27 27 H 1.48502 * 109.47410 * 330.00423 * 24 22 20 28 28 C 1.46903 * 111.43978 * 62.81057 * 15 14 13 29 29 C 1.47075 * 120.88503 * 354.62951 * 12 10 8 30 30 H 1.08995 * 109.47103 * 299.99937 * 1 2 3 31 31 H 1.09005 * 109.46766 * 59.99764 * 1 2 3 32 32 H 1.09003 * 109.47278 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47525 * 240.00535 * 2 1 3 34 34 H 1.08998 * 109.47563 * 120.00454 * 2 1 3 35 35 H 1.08997 * 110.90522 * 338.58574 * 5 3 2 36 36 H 1.08998 * 110.90404 * 102.14873 * 5 3 2 37 37 H 1.09001 * 110.61637 * 155.51935 * 6 5 3 38 38 H 1.09001 * 110.62158 * 278.52275 * 6 5 3 39 39 H 1.09004 * 109.62859 * 350.91481 * 13 12 10 40 40 H 1.08990 * 109.63009 * 111.30058 * 13 12 10 41 41 H 1.09009 * 109.49381 * 66.23052 * 14 13 12 42 42 H 1.09003 * 109.49485 * 186.30513 * 14 13 12 43 43 H 1.08996 * 109.47358 * 185.49787 * 16 15 14 44 44 H 1.09003 * 109.47248 * 305.49919 * 16 15 14 45 45 H 0.97002 * 120.00149 * 0.02562 * 19 17 16 46 46 H 0.96998 * 119.99992 * 179.97438 * 23 22 20 47 47 H 1.09007 * 109.48796 * 177.02069 * 28 15 14 48 48 H 1.08998 * 109.49539 * 56.94618 * 28 15 14 49 49 H 1.08996 * 109.63017 * 248.50601 * 29 12 10 50 50 H 1.09000 * 109.62853 * 8.89229 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5744 2.0107 0.8053 5 6 1.7676 2.1167 -1.3667 6 6 3.0711 2.9231 -1.5965 7 8 4.1022 2.0608 -1.0640 8 6 3.5747 1.4719 0.1365 9 1 3.8586 2.0735 1.0000 10 6 4.1022 0.0691 0.2937 11 8 4.5711 -0.5130 -0.6613 12 7 4.0529 -0.5386 1.4958 13 6 4.4526 -1.9459 1.6471 14 6 3.3367 -2.6969 2.3812 15 7 3.0237 -1.9975 3.6352 16 6 2.0783 -2.7740 4.4483 17 6 2.7334 -4.0564 4.8928 18 8 3.8753 -4.2997 4.5641 19 7 2.0502 -4.9333 5.6547 20 6 2.6459 -6.1001 6.0587 21 1 3.6627 -6.3168 5.7660 22 6 1.9412 -7.0045 6.8438 23 7 2.5125 -8.1227 7.2314 24 14 0.1824 -6.6301 7.3494 25 1 -0.7515 -7.1690 6.3285 26 1 -0.1005 -7.2632 8.6626 27 1 0.0011 -5.1603 7.4593 28 6 2.5120 -0.6440 3.3819 29 6 3.5977 0.1879 2.6908 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 1.6294 1.3696 -2.1483 36 1 0.9045 2.7798 -1.3081 37 1 3.2302 3.1005 -2.6602 38 1 3.0411 3.8654 -1.0494 39 1 4.6076 -2.3903 0.6639 40 1 5.3749 -2.0045 2.2248 41 1 2.4459 -2.7290 1.7537 42 1 3.6648 -3.7131 2.5998 43 1 1.7881 -2.1921 5.3231 44 1 1.1932 -3.0048 3.8555 45 1 1.1366 -4.7393 5.9167 46 1 2.0207 -8.7538 7.7797 47 1 2.2410 -0.1747 4.3277 48 1 1.6335 -0.7015 2.7392 49 1 4.4360 0.3342 3.3719 50 1 3.1906 1.1557 2.3981 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112982556.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:33:28 Heat of formation + Delta-G solvation = -89.761999 kcal Electronic energy + Delta-G solvation = -31302.490287 eV Core-core repulsion = 27137.521224 eV Total energy + Delta-G solvation = -4164.969063 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.20776 -39.39448 -38.46682 -37.28715 -35.19038 -34.48511 -33.83223 -31.75072 -31.48294 -30.68022 -29.91683 -28.65547 -25.91201 -24.44801 -23.84188 -23.54906 -23.06395 -21.73990 -20.45266 -19.43858 -18.99360 -18.34378 -17.54043 -16.90772 -16.62066 -16.07133 -15.63133 -15.31525 -15.22472 -15.06654 -14.95098 -14.69058 -14.47852 -14.13855 -14.09014 -13.77208 -13.51247 -13.26564 -13.20400 -12.82075 -12.61585 -12.43863 -12.38455 -12.02752 -11.94153 -11.71757 -11.64622 -11.50827 -11.50014 -11.29735 -11.10111 -11.06867 -10.99106 -10.89360 -10.62822 -10.35429 -10.00846 -9.60574 -9.51990 -8.93327 -8.49797 -8.21680 -8.03259 -6.34061 -3.85673 2.41173 2.65815 2.99044 3.03446 3.12284 3.60383 3.68601 3.78647 3.95098 4.07058 4.15393 4.22350 4.53910 4.64786 4.71765 4.74865 4.78603 4.86905 4.93341 4.96890 5.03845 5.06968 5.17556 5.19400 5.21372 5.30957 5.33089 5.40776 5.45471 5.48347 5.56751 5.63354 5.65194 5.67182 5.74083 5.77197 5.82576 5.86817 5.99248 6.06225 6.15159 6.35433 6.50577 6.98594 7.17042 7.29092 7.54736 8.05271 8.11195 8.56370 8.91961 9.38914 9.78922 10.78956 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.002521 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.288240 B =11103.706298 C =11700.780524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.137 4.137 3 C -0.107 4.107 4 H 0.092 0.908 5 C -0.148 4.148 6 C 0.044 3.956 7 O -0.349 6.349 8 C 0.061 3.939 9 H 0.090 0.910 10 C 0.522 3.478 11 O -0.524 6.524 12 N -0.612 5.612 13 C 0.121 3.879 14 C 0.040 3.960 15 N -0.514 5.514 16 C 0.044 3.956 17 C 0.451 3.549 18 O -0.558 6.558 19 N -0.590 5.590 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.880 5.880 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C 0.038 3.962 29 C 0.110 3.890 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.063 0.937 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.117 0.883 43 H 0.091 0.909 44 H 0.049 0.951 45 H 0.370 0.630 46 H 0.274 0.726 47 H 0.088 0.912 48 H 0.039 0.961 49 H 0.082 0.918 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.355 24.063 -12.390 28.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.175 4.175 3 C -0.126 4.126 4 H 0.111 0.889 5 C -0.185 4.185 6 C -0.032 4.032 7 O -0.267 6.267 8 C -0.001 4.001 9 H 0.108 0.892 10 C 0.309 3.691 11 O -0.399 6.399 12 N -0.348 5.348 13 C -0.001 4.001 14 C -0.088 4.088 15 N -0.239 5.239 16 C -0.087 4.087 17 C 0.237 3.763 18 O -0.440 6.440 19 N -0.229 5.229 20 C -0.433 4.433 21 H 0.138 0.862 22 C -0.162 4.162 23 N -0.520 5.520 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.091 4.091 29 C -0.013 4.013 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.099 0.901 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.045 0.955 42 H 0.135 0.865 43 H 0.109 0.891 44 H 0.067 0.933 45 H 0.202 0.798 46 H 0.084 0.916 47 H 0.106 0.894 48 H 0.057 0.943 49 H 0.100 0.900 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.670 23.375 -12.854 27.272 hybrid contribution -2.484 0.163 0.397 2.520 sum -8.154 23.539 -12.457 27.852 Atomic orbital electron populations 1.21731 0.95033 1.02005 1.01694 1.21968 0.96735 0.94814 1.03965 1.22529 0.92770 0.98340 0.98984 0.88925 1.23235 0.98506 0.99879 0.96919 1.23659 0.86335 0.93146 1.00103 1.89042 1.37314 1.61155 1.39147 1.22787 0.93960 0.92876 0.90431 0.89246 1.20222 0.78454 0.87773 0.82621 1.90706 1.44456 1.66026 1.38675 1.48221 1.66013 1.13157 1.07384 1.21745 0.98053 0.78973 1.01302 1.22698 0.96810 1.00675 0.88579 1.61444 1.43282 1.01217 1.17938 1.21877 0.93510 0.95302 0.98013 1.19606 0.87659 0.85235 0.83812 1.90532 1.17915 1.77155 1.58437 1.42217 1.14103 1.19223 1.47385 1.19423 1.01424 0.93105 1.29370 0.86221 1.25044 0.98387 0.95571 0.97164 1.69620 1.37313 1.09177 1.35896 0.86678 0.84883 0.78479 0.79363 1.19685 1.20168 1.19501 1.22554 0.95597 0.90678 1.00290 1.21903 0.98185 0.94465 0.86745 0.92656 0.92675 0.92485 0.91167 0.90104 0.89975 0.89784 0.88540 0.91832 0.88942 0.90152 0.95453 0.86482 0.89078 0.93347 0.79752 0.91587 0.89408 0.94270 0.89950 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.80 37.16 0.36 -0.72 16 2 C -0.14 -1.25 4.17 -26.73 -0.11 -1.36 16 3 C -0.11 -0.81 2.61 -89.09 -0.23 -1.04 16 4 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 5 C -0.15 -0.98 6.06 -24.72 -0.15 -1.13 16 6 C 0.04 0.33 7.72 38.21 0.29 0.62 16 7 O -0.35 -4.15 10.82 -54.07 -0.58 -4.73 16 8 C 0.06 0.61 2.91 -27.31 -0.08 0.53 16 9 H 0.09 0.71 6.66 -51.93 -0.35 0.36 16 10 C 0.52 6.94 4.94 -10.98 -0.05 6.89 16 11 O -0.52 -9.17 16.08 -13.28 -0.21 -9.38 16 12 N -0.61 -7.38 2.02 -172.47 -0.35 -7.72 16 13 C 0.12 1.71 6.57 -3.60 -0.02 1.68 16 14 C 0.04 0.61 5.26 -3.67 -0.02 0.59 16 15 N -0.51 -7.36 4.37 -235.71 -1.03 -8.39 16 16 C 0.04 0.68 5.45 -4.98 -0.03 0.65 16 17 C 0.45 9.69 7.44 -10.99 -0.08 9.61 16 18 O -0.56 -14.15 13.89 5.55 0.08 -14.07 16 19 N -0.59 -13.51 5.09 -10.96 -0.06 -13.57 16 20 C -0.30 -8.39 10.16 -14.93 -0.15 -8.55 16 21 H 0.12 3.79 7.39 -52.48 -0.39 3.40 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.37 13.96 55.50 0.77 -24.59 16 24 Si 0.88 18.91 27.73 -169.99 -4.71 14.20 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 27 H -0.27 -5.23 6.52 56.52 0.37 -4.86 16 28 C 0.04 0.38 5.37 -3.70 -0.02 0.36 16 29 C 0.11 1.01 5.90 -3.61 -0.02 0.99 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.36 7.64 -51.93 -0.40 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.81 7.69 -51.92 -0.40 0.41 16 34 H 0.08 0.82 3.66 -51.93 -0.19 0.63 16 35 H 0.08 0.63 7.77 -51.93 -0.40 0.23 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.10 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 1.37 7.10 -51.93 -0.37 1.00 16 40 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 42 H 0.12 2.17 5.76 -51.93 -0.30 1.87 16 43 H 0.09 1.19 7.97 -51.93 -0.41 0.78 16 44 H 0.05 0.66 8.13 -51.93 -0.42 0.24 16 45 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 46 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.09 0.73 7.99 -51.92 -0.41 0.31 16 48 H 0.04 0.37 6.51 -51.93 -0.34 0.03 16 49 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 50 H 0.08 0.53 5.39 -51.93 -0.28 0.25 16 LS Contribution 381.58 15.07 5.75 5.75 Total: -1.00 -34.74 381.58 -8.62 -43.36 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -7.87 Total: 9.01 kcal Atomic # 6 Polarization: 10.56 SS G_CDS: -0.41 Total: 10.15 kcal Atomic # 7 Polarization: -53.62 SS G_CDS: -0.66 Total: -54.28 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -0.72 Total: -28.19 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.74 -8.62 -43.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112982556.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.401 kcal (2) G-P(sol) polarization free energy of solvation -34.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds