Wall clock time and date at job start Tue Mar 31 2020 22:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47269 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00139 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46955 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00209 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00054 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00076 * 179.97438 * 9 7 6 11 11 H 1.08998 * 115.51494 * 9.41973 * 10 9 7 12 12 C 1.52999 * 117.44153 * 223.99547 * 10 9 7 13 13 H 1.08994 * 119.52845 * 4.09681 * 12 10 9 14 14 C 1.57643 * 116.13865 * 161.44070 * 12 10 9 15 15 N 1.48564 * 104.59884 * 87.43369 * 14 12 10 16 16 C 1.46898 * 111.00061 * 200.32406 * 15 14 12 17 17 C 1.50704 * 109.47134 * 305.41735 * 16 15 14 18 18 O 1.21291 * 119.99913 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99624 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00081 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99726 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00434 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99889 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99943 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47427 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47065 * 119.99994 * 24 22 20 27 27 H 1.48504 * 109.46714 * 239.99728 * 24 22 20 28 28 C 1.48561 * 104.21752 * 319.88243 * 15 14 12 29 29 C 1.53001 * 117.44047 * 154.84022 * 10 9 7 30 30 H 1.08997 * 119.52492 * 355.90799 * 29 10 9 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 38 38 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 39 39 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 40 40 H 1.08999 * 109.47074 * 299.99302 * 6 5 4 41 41 H 1.08991 * 109.47312 * 60.00333 * 6 5 4 42 42 H 0.97002 * 119.99528 * 359.97438 * 9 7 6 43 43 H 1.09001 * 110.94893 * 328.37839 * 14 12 10 44 44 H 1.08998 * 109.97195 * 205.99618 * 14 12 10 45 45 H 1.08998 * 109.46721 * 65.41899 * 16 15 14 46 46 H 1.08996 * 109.46873 * 185.42181 * 16 15 14 47 47 H 0.97000 * 120.00340 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99723 * 180.02562 * 23 22 20 49 49 H 1.08994 * 110.40970 * 280.70100 * 28 15 14 50 50 H 1.09008 * 110.40719 * 158.26122 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0009 5.2154 -0.0005 9 7 7.1609 4.7089 0.0005 10 6 7.5387 6.1243 -0.0001 11 1 6.7220 6.8283 0.1601 12 6 8.6647 6.5532 -0.9429 13 1 9.1014 5.8238 -1.6250 14 6 8.7507 8.0937 -1.2665 15 7 9.5915 8.6582 -0.1794 16 6 9.3820 10.1064 -0.0500 17 6 9.6194 10.7694 -1.3825 18 8 9.9318 10.1010 -2.3452 19 7 9.4835 12.1046 -1.5044 20 6 9.6999 12.7079 -2.7164 21 1 9.9789 12.1129 -3.5735 22 6 9.5604 14.0846 -2.8420 23 7 9.2214 14.8086 -1.7991 24 14 9.8546 14.9063 -4.4936 25 1 10.2228 13.8779 -5.4996 26 1 8.6170 15.6029 -4.9274 27 1 10.9585 15.8915 -4.3666 28 6 9.1378 7.9434 1.0413 29 6 8.9076 6.4890 0.5777 30 1 9.5251 5.7117 1.0277 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.9330 0.9289 0.8909 39 1 3.9337 0.9285 -0.8891 40 1 5.8736 2.4196 0.8902 41 1 5.8736 2.4188 -0.8897 42 1 7.8475 4.0236 0.0012 43 1 7.7608 8.5497 -1.2572 44 1 9.2289 8.2447 -2.2342 45 1 8.3591 10.2980 0.2741 46 1 10.0779 10.5098 0.6855 47 1 9.2333 12.6390 -0.7345 48 1 9.1236 15.7696 -1.8869 49 1 8.2085 8.3760 1.4118 50 1 9.9085 7.9795 1.8114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114082323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:43 Heat of formation + Delta-G solvation = -81.308577 kcal Electronic energy + Delta-G solvation = -28178.668869 eV Core-core repulsion = 24014.066374 eV Total energy + Delta-G solvation = -4164.602496 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.46168 -39.47478 -38.24389 -37.78361 -35.38429 -35.09529 -33.90303 -32.68057 -31.23944 -30.17439 -28.28388 -28.02045 -27.12168 -24.63780 -23.75326 -22.49976 -21.62844 -21.05930 -20.73044 -20.23257 -19.14701 -17.83692 -17.51964 -17.36960 -16.99736 -16.39147 -15.83609 -15.72526 -15.23336 -15.03603 -14.72074 -14.58550 -14.50422 -14.04998 -13.73750 -13.50343 -13.48020 -13.31836 -13.22908 -12.91250 -12.36456 -12.36082 -12.06987 -11.96294 -11.84697 -11.57732 -11.53941 -11.42009 -11.29875 -11.19605 -11.12018 -10.98826 -10.85936 -10.33565 -10.22990 -10.14503 -10.10582 -10.01135 -9.50283 -8.93768 -8.40489 -8.03437 -7.92369 -6.41767 -3.82570 2.26678 2.33118 3.16862 3.27653 3.34710 3.44608 3.63541 3.88925 4.06944 4.24054 4.32842 4.42210 4.53374 4.58587 4.63497 4.65102 4.67074 4.72864 4.81617 4.83634 4.89695 4.99262 5.10995 5.19120 5.25698 5.27533 5.32218 5.34106 5.42906 5.55429 5.65776 5.71825 5.74466 5.76282 5.78374 5.84373 5.92968 6.04803 6.12384 6.25839 6.30626 6.61396 6.63414 7.13420 7.16294 7.25001 7.55719 7.92632 8.05995 8.61068 9.17833 9.53496 10.04796 10.75955 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.001541 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.351221 B =18162.817773 C =19115.079958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.121 4.121 4 C 0.060 3.940 5 O -0.363 6.363 6 C 0.047 3.953 7 C 0.516 3.484 8 O -0.512 6.512 9 N -0.699 5.699 10 C 0.101 3.899 11 H 0.134 0.866 12 C -0.161 4.161 13 H 0.121 0.879 14 C 0.067 3.933 15 N -0.487 5.487 16 C 0.034 3.966 17 C 0.442 3.558 18 O -0.581 6.581 19 N -0.561 5.561 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.060 3.940 29 C -0.170 4.170 30 H 0.116 0.884 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.402 0.598 43 H 0.042 0.958 44 H 0.121 0.879 45 H 0.051 0.949 46 H 0.093 0.907 47 H 0.393 0.607 48 H 0.271 0.729 49 H 0.046 0.954 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.886 -28.549 8.574 31.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.016 4.016 5 O -0.282 6.282 6 C -0.033 4.033 7 C 0.301 3.699 8 O -0.386 6.386 9 N -0.351 5.351 10 C -0.005 4.005 11 H 0.151 0.849 12 C -0.182 4.182 13 H 0.139 0.861 14 C -0.061 4.061 15 N -0.211 5.211 16 C -0.098 4.098 17 C 0.227 3.773 18 O -0.466 6.466 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.542 5.542 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.068 4.068 29 C -0.190 4.190 30 H 0.134 0.866 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.236 0.764 43 H 0.060 0.940 44 H 0.139 0.861 45 H 0.069 0.931 46 H 0.111 0.889 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.925 -28.057 7.840 30.469 hybrid contribution -0.184 0.384 -0.013 0.426 sum -9.109 -27.674 7.827 30.167 Atomic orbital electron populations 1.21757 0.95274 1.01764 1.02216 1.21439 0.96424 0.95846 1.02159 1.21557 0.93019 0.97351 1.03886 1.22625 0.95638 0.83123 1.00259 1.88022 1.18248 1.26448 1.95434 1.22144 0.84257 0.94195 1.02692 1.20247 0.82404 0.90700 0.76520 1.90765 1.49161 1.51681 1.46953 1.45157 1.07035 1.07262 1.75603 1.21867 0.92727 0.82949 1.02978 0.84859 1.24803 1.01743 0.98831 0.92796 0.86087 1.23444 0.95801 0.88146 0.98685 1.65381 1.50817 1.02482 1.02446 1.22104 1.00556 0.88780 0.98369 1.19683 0.84921 0.83172 0.89500 1.90446 1.52942 1.63030 1.40177 1.41849 1.60344 1.05275 1.12233 1.19759 1.43783 0.90566 0.88762 0.87801 1.25266 0.97188 0.96366 0.99066 1.69621 1.47789 1.07051 1.29716 0.85799 0.77866 0.79085 0.81589 1.19198 1.20765 1.20742 1.22694 0.99313 0.90717 0.94099 1.23774 0.98644 0.98576 0.97962 0.86570 0.92576 0.92489 0.92525 0.91854 0.91820 0.90821 0.90875 0.93123 0.93084 0.90166 0.90086 0.76395 0.94008 0.86095 0.93138 0.88927 0.77422 0.91896 0.93594 0.89491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.58 5.93 -26.73 -0.16 -0.74 16 3 C -0.12 -0.80 5.58 -26.73 -0.15 -0.94 16 4 C 0.06 0.40 5.94 37.16 0.22 0.62 16 5 O -0.36 -3.80 9.88 -55.14 -0.54 -4.34 16 6 C 0.05 0.36 6.42 36.01 0.23 0.59 16 7 C 0.52 5.87 7.91 -10.98 -0.09 5.78 16 8 O -0.51 -8.54 16.07 -14.36 -0.23 -8.77 16 9 N -0.70 -6.44 5.56 -53.80 -0.30 -6.74 16 10 C 0.10 1.20 5.93 -67.93 -0.40 0.79 16 11 H 0.13 1.91 7.40 -51.93 -0.38 1.53 16 12 C -0.16 -2.08 7.32 -87.50 -0.64 -2.72 16 13 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 14 C 0.07 1.14 5.18 -0.37 0.00 1.14 16 15 N -0.49 -8.22 5.34 -229.19 -1.22 -9.44 16 16 C 0.03 0.61 5.55 -4.98 -0.03 0.58 16 17 C 0.44 10.43 7.50 -10.99 -0.08 10.35 16 18 O -0.58 -15.40 13.24 5.55 0.07 -15.33 16 19 N -0.56 -14.26 5.29 -10.96 -0.06 -14.32 16 20 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 21 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.61 13.05 55.50 0.72 -23.88 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.06 0.77 6.30 -2.18 -0.01 0.76 16 29 C -0.17 -1.90 6.97 -89.31 -0.62 -2.52 16 30 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.40 2.25 8.83 -40.82 -0.36 1.89 16 43 H 0.04 0.75 8.00 -51.93 -0.42 0.33 16 44 H 0.12 2.46 6.04 -51.93 -0.31 2.14 16 45 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16 46 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 47 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 48 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 49 H 0.05 0.58 7.82 -51.93 -0.41 0.18 16 50 H 0.09 1.00 8.14 -51.92 -0.42 0.58 16 LS Contribution 412.35 15.07 6.21 6.21 Total: -1.00 -34.77 412.35 -10.44 -45.20 By element: Atomic # 1 Polarization: 18.39 SS G_CDS: -8.46 Total: 9.92 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -1.61 Total: 5.37 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.86 Total: -54.38 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -0.70 Total: -28.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.77 -10.44 -45.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114082323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.105 kcal (2) G-P(sol) polarization free energy of solvation -34.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds