Wall clock time and date at job start Tue Mar 31 2020 22:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.52997 * 109.47127 * 179.97438 * 3 2 1 5 5 O 1.42895 * 109.47269 * 179.97438 * 4 3 2 6 6 C 1.42901 * 114.00139 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46955 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00209 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00054 * 179.97438 * 7 6 5 10 10 C 1.46501 * 120.00076 * 179.97438 * 9 7 6 11 11 H 1.08998 * 115.51494 * 9.41973 * 10 9 7 12 12 C 1.52999 * 117.44153 * 223.99547 * 10 9 7 13 13 H 1.08994 * 119.52845 * 4.09681 * 12 10 9 14 14 C 1.57643 * 116.13865 * 161.44070 * 12 10 9 15 15 N 1.48564 * 104.59884 * 87.43369 * 14 12 10 16 16 C 1.46898 * 111.00061 * 200.32406 * 15 14 12 17 17 C 1.50704 * 109.47134 * 305.41735 * 16 15 14 18 18 O 1.21291 * 119.99913 * 0.02562 * 17 16 15 19 19 N 1.34770 * 119.99624 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00081 * 179.97438 * 19 17 16 21 21 H 1.08009 * 119.99726 * 0.02562 * 20 19 17 22 22 C 1.38948 * 120.00434 * 180.02562 * 20 19 17 23 23 N 1.31409 * 119.99889 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99943 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47427 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47065 * 119.99994 * 24 22 20 27 27 H 1.48504 * 109.46714 * 239.99728 * 24 22 20 28 28 C 1.48561 * 104.21752 * 319.88243 * 15 14 12 29 29 C 1.53001 * 117.44047 * 154.84022 * 10 9 7 30 30 H 1.08997 * 119.52492 * 355.90799 * 29 10 9 31 31 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 33 33 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 34 34 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 35 35 H 1.08996 * 109.47853 * 239.99841 * 2 1 3 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 38 38 H 1.09001 * 109.47289 * 299.99953 * 4 3 2 39 39 H 1.09004 * 109.47261 * 59.99697 * 4 3 2 40 40 H 1.08999 * 109.47074 * 299.99302 * 6 5 4 41 41 H 1.08991 * 109.47312 * 60.00333 * 6 5 4 42 42 H 0.97002 * 119.99528 * 359.97438 * 9 7 6 43 43 H 1.09001 * 110.94893 * 328.37839 * 14 12 10 44 44 H 1.08998 * 109.97195 * 205.99618 * 14 12 10 45 45 H 1.08998 * 109.46721 * 65.41899 * 16 15 14 46 46 H 1.08996 * 109.46873 * 185.42181 * 16 15 14 47 47 H 0.97000 * 120.00340 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99723 * 180.02562 * 23 22 20 49 49 H 1.08994 * 110.40970 * 280.70100 * 28 15 14 50 50 H 1.09008 * 110.40719 * 158.26122 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 8 4.0463 2.7898 0.0000 6 6 5.4709 2.9026 0.0000 7 6 5.8594 4.3587 0.0000 8 8 5.0009 5.2154 -0.0005 9 7 7.1609 4.7089 0.0005 10 6 7.5387 6.1243 -0.0001 11 1 6.7220 6.8283 0.1601 12 6 8.6647 6.5532 -0.9429 13 1 9.1014 5.8238 -1.6250 14 6 8.7507 8.0937 -1.2665 15 7 9.5915 8.6582 -0.1794 16 6 9.3820 10.1064 -0.0500 17 6 9.6194 10.7694 -1.3825 18 8 9.9318 10.1010 -2.3452 19 7 9.4835 12.1046 -1.5044 20 6 9.6999 12.7079 -2.7164 21 1 9.9789 12.1129 -3.5735 22 6 9.5604 14.0846 -2.8420 23 7 9.2214 14.8086 -1.7991 24 14 9.8546 14.9063 -4.4936 25 1 10.2228 13.8779 -5.4996 26 1 8.6170 15.6029 -4.9274 27 1 10.9585 15.8915 -4.3666 28 6 9.1378 7.9434 1.0413 29 6 8.9076 6.4890 0.5777 30 1 9.5251 5.7117 1.0277 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 0.5139 0.8900 34 1 1.8934 -0.5137 0.8900 35 1 1.8934 -0.5138 -0.8899 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9563 0.8899 38 1 3.9330 0.9289 0.8909 39 1 3.9337 0.9285 -0.8891 40 1 5.8736 2.4196 0.8902 41 1 5.8736 2.4188 -0.8897 42 1 7.8475 4.0236 0.0012 43 1 7.7608 8.5497 -1.2572 44 1 9.2289 8.2447 -2.2342 45 1 8.3591 10.2980 0.2741 46 1 10.0779 10.5098 0.6855 47 1 9.2333 12.6390 -0.7345 48 1 9.1236 15.7696 -1.8869 49 1 8.2085 8.3760 1.4118 50 1 9.9085 7.9795 1.8114 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114082323.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:42 Heat of formation + Delta-G solvation = -107.685958 kcal Electronic energy + Delta-G solvation = -28179.812678 eV Core-core repulsion = 24014.066374 eV Total energy + Delta-G solvation = -4165.746305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.49964 -40.60573 -39.66867 -38.71715 -36.43346 -35.82528 -35.75670 -33.81994 -33.26407 -30.70363 -29.39324 -29.16930 -28.21622 -26.47312 -24.23842 -23.70004 -22.15825 -22.06984 -21.66329 -21.30247 -20.95406 -19.85841 -18.30719 -18.21863 -17.65969 -17.53426 -17.14170 -16.64038 -16.38579 -16.31565 -16.25770 -15.82517 -15.47443 -15.24313 -15.01298 -14.90139 -14.51378 -14.18480 -13.93794 -13.85326 -13.71433 -13.52321 -13.27287 -13.17430 -12.95166 -12.85774 -12.54288 -12.43963 -12.41824 -12.35089 -12.11243 -11.97665 -11.96200 -11.87852 -11.53391 -11.50243 -11.14265 -10.96254 -10.67815 -10.23411 -10.03140 -9.83557 -9.42193 -8.48395 -5.97138 1.35261 1.40665 1.41712 1.54887 1.58610 2.01295 2.27137 2.62909 2.78006 2.94267 3.18462 3.30515 3.56817 3.66422 3.70094 3.78935 3.98820 4.06072 4.07066 4.20786 4.22651 4.24196 4.27068 4.28122 4.41480 4.42806 4.47455 4.50065 4.51504 4.63160 4.68562 4.78599 4.90823 4.94582 4.97227 5.02566 5.11426 5.21678 5.23562 5.34497 5.39117 5.39972 5.44158 5.78239 5.85869 6.05726 6.08341 6.47686 6.58164 7.10869 7.15356 7.52928 8.08490 8.69323 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018010 B = 0.001541 C = 0.001464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.351221 B =18162.817773 C =19115.079958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.115 4.115 3 C -0.122 4.122 4 C 0.058 3.942 5 O -0.405 6.405 6 C 0.051 3.949 7 C 0.510 3.490 8 O -0.577 6.577 9 N -0.679 5.679 10 C 0.103 3.897 11 H 0.103 0.897 12 C -0.168 4.168 13 H 0.139 0.861 14 C 0.065 3.935 15 N -0.500 5.500 16 C 0.044 3.956 17 C 0.438 3.562 18 O -0.614 6.614 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.080 0.920 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.272 1.272 27 H -0.269 1.269 28 C 0.055 3.945 29 C -0.141 4.141 30 H 0.154 0.846 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.113 0.887 42 H 0.424 0.576 43 H 0.020 0.980 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.117 0.883 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.048 0.952 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.911 -30.997 9.852 33.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.153 4.153 3 C -0.160 4.160 4 C -0.018 4.018 5 O -0.324 6.324 6 C -0.029 4.029 7 C 0.298 3.702 8 O -0.455 6.455 9 N -0.331 5.331 10 C -0.004 4.004 11 H 0.121 0.879 12 C -0.188 4.188 13 H 0.156 0.844 14 C -0.063 4.063 15 N -0.224 5.224 16 C -0.087 4.087 17 C 0.225 3.775 18 O -0.500 6.500 19 N -0.209 5.209 20 C -0.463 4.463 21 H 0.098 0.902 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.197 1.197 26 H -0.197 1.197 27 H -0.195 1.195 28 C -0.072 4.072 29 C -0.161 4.161 30 H 0.172 0.828 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.135 0.865 41 H 0.130 0.870 42 H 0.263 0.737 43 H 0.038 0.962 44 H 0.100 0.900 45 H 0.083 0.917 46 H 0.135 0.865 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.066 0.934 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.914 -30.548 9.148 32.856 hybrid contribution -0.505 1.110 -0.396 1.283 sum -8.418 -29.438 8.752 31.844 Atomic orbital electron populations 1.21785 0.95503 1.02236 1.01761 1.21410 0.96212 0.94594 1.03076 1.21579 0.93660 0.98337 1.02435 1.22786 0.95201 0.81876 1.01957 1.87976 1.19937 1.28698 1.95836 1.22311 0.83399 0.91321 1.05821 1.21103 0.82141 0.92064 0.74908 1.90743 1.50969 1.53723 1.50082 1.44959 1.07236 1.06569 1.74375 1.21545 0.92061 0.84095 1.02704 0.87869 1.24619 1.03490 0.96130 0.94570 0.84369 1.23204 0.94098 0.91604 0.97422 1.65383 1.51192 1.01731 1.04137 1.22000 1.01982 0.89611 0.95102 1.20694 0.82968 0.82557 0.91253 1.90440 1.53833 1.63642 1.42115 1.41917 1.61168 1.06076 1.11707 1.19713 1.45940 0.91323 0.89292 0.90223 1.26044 0.96312 0.96289 1.02552 1.69680 1.47675 1.07555 1.31206 0.84865 0.78283 0.77909 0.77240 1.19748 1.19717 1.19456 1.22855 1.00225 0.91278 0.92850 1.23877 0.97873 0.98435 0.95909 0.82844 0.91602 0.93076 0.92933 0.90767 0.90955 0.92460 0.92225 0.91133 0.91447 0.86512 0.86974 0.73727 0.96165 0.90046 0.91721 0.86536 0.77027 0.91284 0.93405 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.91 71.98 0.71 -0.64 16 2 C -0.12 -0.94 5.93 30.60 0.18 -0.76 16 3 C -0.12 -1.56 5.58 30.60 0.17 -1.39 16 4 C 0.06 0.66 5.94 71.98 0.43 1.09 16 5 O -0.41 -8.00 9.88 -129.94 -1.28 -9.28 16 6 C 0.05 0.63 6.42 71.24 0.46 1.09 16 7 C 0.51 10.99 7.91 87.66 0.69 11.68 16 8 O -0.58 -19.80 16.07 15.99 0.26 -19.54 16 9 N -0.68 -10.90 5.56 -442.52 -2.46 -13.36 16 10 C 0.10 2.32 5.93 44.99 0.27 2.59 16 11 H 0.10 3.05 7.40 -2.39 -0.02 3.03 16 12 C -0.17 -4.16 7.32 -8.77 -0.06 -4.22 16 13 H 0.14 2.94 8.14 -2.39 -0.02 2.92 16 14 C 0.06 2.29 5.18 87.62 0.45 2.74 16 15 N -0.50 -16.60 5.34 -879.03 -4.69 -21.29 16 16 C 0.04 1.60 5.55 85.56 0.47 2.08 16 17 C 0.44 21.37 7.50 87.66 0.66 22.03 16 18 O -0.61 -34.11 13.24 -3.06 -0.04 -34.15 16 19 N -0.57 -30.02 5.29 -306.98 -1.62 -31.65 16 20 C -0.33 -19.25 9.68 84.04 0.81 -18.43 16 21 H 0.08 4.90 7.16 -2.91 -0.02 4.88 16 22 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 23 N -0.92 -50.44 13.05 21.66 0.28 -50.16 16 24 Si 0.99 43.64 29.55 68.60 2.03 45.67 16 25 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 26 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 27 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 28 C 0.06 1.30 6.30 86.45 0.54 1.84 16 29 C -0.14 -2.74 6.97 -9.94 -0.07 -2.81 16 30 H 0.15 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 34 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.42 3.03 8.83 -92.71 -0.82 2.21 16 43 H 0.02 0.77 8.00 -2.39 -0.02 0.76 16 44 H 0.08 3.52 6.04 -2.39 -0.01 3.51 16 45 H 0.06 2.16 7.88 -2.39 -0.02 2.14 16 46 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 47 H 0.40 19.81 7.90 -92.71 -0.73 19.07 16 48 H 0.28 14.20 8.31 -92.71 -0.77 13.43 16 49 H 0.05 1.13 7.82 -2.39 -0.02 1.12 16 50 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 Total: -1.00 -80.84 412.35 -1.95 -82.79 By element: Atomic # 1 Polarization: 34.90 SS G_CDS: -0.60 Total: 34.29 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 6.19 Total: 16.69 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -8.49 Total: -116.46 kcal Atomic # 8 Polarization: -61.91 SS G_CDS: -1.07 Total: -62.98 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.67 kcal Total: -80.84 -1.95 -82.79 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114082323.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.897 kcal (2) G-P(sol) polarization free energy of solvation -80.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds