Wall clock time and date at job start Tue Mar 31 2020 23:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46865 * 2 1 4 4 H 1.09007 * 109.47192 * 55.00342 * 3 2 1 5 5 C 1.53004 * 109.46739 * 174.99905 * 3 2 1 6 6 O 1.42898 * 109.47473 * 294.99885 * 3 2 1 7 7 C 1.42897 * 114.00203 * 150.00348 * 6 3 2 8 8 C 1.50700 * 109.47280 * 180.02562 * 7 6 3 9 9 O 1.21275 * 120.00091 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00163 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00159 * 179.97438 * 10 8 7 12 12 H 1.09002 * 115.51680 * 9.41702 * 11 10 8 13 13 C 1.52998 * 117.40749 * 224.05413 * 11 10 8 14 14 H 1.08998 * 119.53110 * 4.07380 * 13 11 10 15 15 C 1.57592 * 116.16995 * 161.48550 * 13 11 10 16 16 N 1.48560 * 104.65878 * 87.33658 * 15 13 11 17 17 C 1.46892 * 111.00234 * 200.33982 * 16 15 13 18 18 C 1.50702 * 109.46945 * 305.41617 * 17 16 15 19 19 O 1.21291 * 120.00220 * 0.02562 * 18 17 16 20 20 N 1.34785 * 119.99965 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99838 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00052 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99590 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99808 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00286 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46796 * 89.99750 * 25 23 21 27 27 H 1.48499 * 109.47288 * 209.99294 * 25 23 21 28 28 H 1.48490 * 109.47270 * 329.99750 * 25 23 21 29 29 C 1.48559 * 104.21875 * 319.89505 * 16 15 13 30 30 C 1.53005 * 117.44348 * 154.83736 * 11 10 8 31 31 H 1.08992 * 119.52640 * 355.86531 * 30 11 10 32 32 H 1.08998 * 109.46676 * 299.99866 * 1 2 3 33 33 H 1.09001 * 109.46767 * 59.99963 * 1 2 3 34 34 H 1.08994 * 109.46771 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.46676 * 240.00134 * 2 1 3 36 36 H 1.09001 * 109.46767 * 120.00036 * 2 1 3 37 37 H 1.09008 * 109.46897 * 180.02562 * 5 3 2 38 38 H 1.08996 * 109.47153 * 299.99606 * 5 3 2 39 39 H 1.08999 * 109.47209 * 60.00392 * 5 3 2 40 40 H 1.08998 * 109.47583 * 60.00105 * 7 6 3 41 41 H 1.09001 * 109.46965 * 300.00070 * 7 6 3 42 42 H 0.97007 * 119.99599 * 0.02562 * 10 8 7 43 43 H 1.09002 * 110.91244 * 328.26738 * 15 13 11 44 44 H 1.08997 * 109.95781 * 205.92172 * 15 13 11 45 45 H 1.09001 * 109.47436 * 65.41568 * 17 16 15 46 46 H 1.08995 * 109.47436 * 185.41507 * 17 16 15 47 47 H 0.97005 * 119.99710 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00151 * 180.02562 * 24 23 21 49 49 H 1.09006 * 110.41217 * 280.70359 * 29 16 15 50 50 H 1.08997 * 110.41336 * 158.26460 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0628 4.0571 -2.4401 9 8 0.9687 3.3267 -3.4036 10 7 0.8156 5.3759 -2.5676 11 6 0.4339 5.9270 -3.8701 12 1 0.2159 5.1923 -4.6453 13 6 1.1005 7.2338 -4.3047 14 1 1.8755 7.6757 -3.6785 15 6 1.0368 7.5684 -5.8434 16 7 -0.2496 8.2905 -6.0181 17 6 -0.6895 8.2509 -7.4191 18 6 0.4081 8.7808 -8.3054 19 8 1.4541 9.1542 -7.8179 20 7 0.2275 8.8398 -9.6398 21 6 1.2258 9.3223 -10.4459 22 1 2.1571 9.6548 -10.0119 23 6 1.0398 9.3826 -11.8216 24 7 1.9969 9.8447 -12.5945 25 14 -0.5709 8.8068 -12.5724 26 1 -1.5192 9.9473 -12.6441 27 1 -0.3208 8.2843 -13.9398 28 1 -1.1530 7.7312 -11.7303 29 6 -1.2002 7.5600 -5.1408 30 6 -0.3815 7.2217 -3.8765 31 1 -0.7096 7.6545 -2.9315 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 3.9282 2.4720 0.1262 38 1 3.8532 0.9570 1.0571 39 1 3.9995 0.9053 -0.7161 40 1 2.3769 3.9644 -0.7609 41 1 0.6619 3.6808 -0.3783 42 1 0.8912 5.9602 -1.7970 43 1 1.0451 6.6565 -6.4405 44 1 1.8735 8.2101 -6.1195 45 1 -0.9181 7.2226 -7.6992 46 1 -1.5812 8.8665 -7.5375 47 1 -0.6089 8.5407 -10.0296 48 1 1.8669 9.8871 -13.5548 49 1 -1.5421 6.6467 -5.6279 50 1 -2.0479 8.1961 -4.8859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114152854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:58 Heat of formation + Delta-G solvation = -70.472658 kcal Electronic energy + Delta-G solvation = -28792.500550 eV Core-core repulsion = 24628.367935 eV Total energy + Delta-G solvation = -4164.132615 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.51829 -39.61130 -38.56366 -37.98829 -35.20409 -34.20630 -33.95853 -32.71701 -31.67199 -30.35312 -28.66466 -28.13287 -27.36680 -24.58000 -24.06930 -22.44753 -21.49558 -21.09087 -20.80478 -20.29894 -19.37087 -18.21481 -17.64539 -17.48232 -16.74189 -16.36991 -15.87930 -15.29101 -15.18043 -14.90360 -14.76468 -14.69245 -14.26817 -13.95560 -13.71542 -13.64017 -13.52159 -13.22981 -13.16939 -12.94109 -12.57410 -12.49085 -12.31482 -12.07226 -12.02958 -11.89264 -11.80274 -11.44095 -11.41303 -11.29298 -11.06731 -11.01217 -10.92512 -10.59377 -10.14278 -10.08185 -10.03509 -9.97736 -9.56124 -8.97568 -8.52807 -8.20649 -8.07929 -6.31522 -3.82995 2.24831 2.32233 3.03285 3.07418 3.15703 3.46457 3.58691 3.71220 4.02305 4.10537 4.22563 4.40925 4.48127 4.50774 4.60874 4.62800 4.64864 4.71095 4.77578 4.84783 4.89275 5.07658 5.10452 5.18701 5.20373 5.21571 5.22724 5.48112 5.49898 5.56929 5.61176 5.66783 5.68066 5.70164 5.73847 5.77364 5.89518 5.93329 6.00323 6.06342 6.26538 6.56275 6.67191 7.04101 7.12840 7.14275 7.57336 7.90678 8.13835 8.58804 8.94325 9.41449 9.81205 10.81405 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.001723 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.361999 B =16242.422798 C =16562.193425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C 0.083 3.917 4 H 0.062 0.938 5 C -0.178 4.178 6 O -0.354 6.354 7 C 0.046 3.954 8 C 0.517 3.483 9 O -0.512 6.512 10 N -0.700 5.700 11 C 0.102 3.898 12 H 0.134 0.866 13 C -0.161 4.161 14 H 0.122 0.878 15 C 0.065 3.935 16 N -0.487 5.487 17 C 0.031 3.969 18 C 0.451 3.549 19 O -0.563 6.563 20 N -0.588 5.588 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.270 1.270 27 H -0.276 1.276 28 H -0.270 1.270 29 C 0.060 3.940 30 C -0.170 4.170 31 H 0.117 0.883 32 H 0.050 0.950 33 H 0.063 0.937 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.402 0.598 43 H 0.043 0.957 44 H 0.122 0.878 45 H 0.052 0.948 46 H 0.094 0.906 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.046 0.954 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.910 -14.800 28.518 32.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C 0.025 3.975 4 H 0.080 0.920 5 C -0.235 4.235 6 O -0.272 6.272 7 C -0.034 4.034 8 C 0.302 3.698 9 O -0.385 6.385 10 N -0.351 5.351 11 C -0.004 4.004 12 H 0.151 0.849 13 C -0.181 4.181 14 H 0.140 0.860 15 C -0.063 4.063 16 N -0.211 5.211 17 C -0.101 4.101 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.227 5.227 21 C -0.434 4.434 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.195 1.195 29 C -0.068 4.068 30 C -0.190 4.190 31 H 0.135 0.865 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.236 0.764 43 H 0.061 0.939 44 H 0.140 0.860 45 H 0.070 0.930 46 H 0.112 0.888 47 H 0.204 0.796 48 H 0.084 0.916 49 H 0.064 0.936 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.166 -14.599 27.865 31.879 hybrid contribution -1.267 -0.674 -0.341 1.475 sum -6.433 -15.273 27.524 32.128 Atomic orbital electron populations 1.21749 0.95265 1.01821 1.02210 1.21632 0.96753 0.94538 1.02897 1.22256 0.94434 0.94262 0.86509 0.92024 1.22321 0.95914 1.02553 1.02726 1.88074 1.89398 1.17588 1.32131 1.22186 1.01557 0.84566 0.95093 1.20257 0.77253 0.81880 0.90424 1.90761 1.49381 1.58388 1.40000 1.45163 1.70609 1.08153 1.11192 1.21853 1.01449 0.90239 0.86859 0.84884 1.24806 0.95701 0.99514 0.98090 0.85997 1.23452 0.95141 0.97435 0.90229 1.65382 1.02036 1.48547 1.05127 1.22138 0.98760 1.00372 0.88831 1.19586 0.89125 0.85101 0.82542 1.90490 1.28575 1.51971 1.73471 1.42191 1.16477 1.58153 1.05854 1.19430 0.97237 1.38640 0.88074 0.86215 1.25041 0.97687 0.97469 0.95907 1.69623 1.32212 1.45045 1.05109 0.86673 0.83610 0.79266 0.79866 1.19566 1.20158 1.19507 1.22692 0.95620 0.96898 0.91576 1.23794 0.94815 1.00475 0.99953 0.86518 0.93116 0.91751 0.92615 0.90788 0.90618 0.92407 0.91458 0.91426 0.90214 0.90244 0.76393 0.93916 0.86001 0.93029 0.88787 0.79647 0.91590 0.93592 0.89435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.81 37.16 0.36 -0.62 16 2 C -0.12 -0.75 5.64 -26.73 -0.15 -0.90 16 3 C 0.08 0.55 2.72 -26.73 -0.07 0.47 16 4 H 0.06 0.30 7.79 -51.92 -0.40 -0.11 16 5 C -0.18 -1.02 9.53 37.16 0.35 -0.67 16 6 O -0.35 -3.49 9.06 -55.14 -0.50 -3.99 16 7 C 0.05 0.34 6.23 36.01 0.22 0.56 16 8 C 0.52 5.67 7.91 -10.99 -0.09 5.59 16 9 O -0.51 -8.29 16.06 -14.35 -0.23 -8.52 16 10 N -0.70 -6.20 5.56 -53.81 -0.30 -6.50 16 11 C 0.10 1.16 5.92 -67.93 -0.40 0.76 16 12 H 0.13 1.83 7.40 -51.93 -0.38 1.45 16 13 C -0.16 -2.00 7.32 -87.45 -0.64 -2.64 16 14 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 15 C 0.06 1.07 5.17 -0.40 0.00 1.07 16 16 N -0.49 -7.83 5.34 -229.24 -1.22 -9.05 16 17 C 0.03 0.52 5.55 -4.98 -0.03 0.49 16 18 C 0.45 10.20 7.50 -10.98 -0.08 10.12 16 19 O -0.56 -14.71 13.24 5.55 0.07 -14.64 16 20 N -0.59 -14.02 5.09 -10.96 -0.06 -14.08 16 21 C -0.31 -8.63 10.16 -14.94 -0.15 -8.78 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.16 5.50 -17.47 -0.10 1.06 16 24 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 25 Si 0.88 19.47 27.74 -169.99 -4.71 14.75 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 29 C 0.06 0.73 6.30 -2.18 -0.01 0.72 16 30 C -0.17 -1.81 6.97 -89.23 -0.62 -2.43 16 31 H 0.12 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.54 7.82 -51.93 -0.41 0.14 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 0.31 7.87 -51.92 -0.41 -0.10 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 41 H 0.08 0.37 8.09 -51.93 -0.42 -0.05 16 42 H 0.40 2.14 8.83 -40.82 -0.36 1.78 16 43 H 0.04 0.73 8.00 -51.93 -0.42 0.32 16 44 H 0.12 2.42 6.04 -51.93 -0.31 2.11 16 45 H 0.05 0.79 7.88 -51.93 -0.41 0.38 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 48 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.05 0.54 7.82 -51.93 -0.41 0.14 16 50 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 407.27 15.07 6.14 6.14 Total: -1.00 -35.74 407.27 -9.80 -45.54 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -8.36 Total: 10.53 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -1.41 Total: 4.79 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.80 Total: -54.61 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.66 Total: -27.14 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -4.71 Total: 14.75 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.74 -9.80 -45.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114152854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.930 kcal (2) G-P(sol) polarization free energy of solvation -35.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds