Wall clock time and date at job start Tue Mar 31 2020 23:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52995 * 109.46865 * 2 1 4 4 H 1.09007 * 109.47192 * 55.00342 * 3 2 1 5 5 C 1.53004 * 109.46739 * 174.99905 * 3 2 1 6 6 O 1.42898 * 109.47473 * 294.99885 * 3 2 1 7 7 C 1.42897 * 114.00203 * 150.00348 * 6 3 2 8 8 C 1.50700 * 109.47280 * 180.02562 * 7 6 3 9 9 O 1.21275 * 120.00091 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00163 * 179.97438 * 8 7 6 11 11 C 1.46496 * 120.00159 * 179.97438 * 10 8 7 12 12 H 1.09002 * 115.51680 * 9.41702 * 11 10 8 13 13 C 1.52998 * 117.40749 * 224.05413 * 11 10 8 14 14 H 1.08998 * 119.53110 * 4.07380 * 13 11 10 15 15 C 1.57592 * 116.16995 * 161.48550 * 13 11 10 16 16 N 1.48560 * 104.65878 * 87.33658 * 15 13 11 17 17 C 1.46892 * 111.00234 * 200.33982 * 16 15 13 18 18 C 1.50702 * 109.46945 * 305.41617 * 17 16 15 19 19 O 1.21291 * 120.00220 * 0.02562 * 18 17 16 20 20 N 1.34785 * 119.99965 * 180.02562 * 18 17 16 21 21 C 1.37095 * 119.99838 * 179.97438 * 20 18 17 22 22 H 1.07994 * 120.00052 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99590 * 179.97438 * 21 20 18 24 24 N 1.31417 * 119.99808 * 180.02562 * 23 21 20 25 25 Si 1.86802 * 120.00286 * 0.02562 * 23 21 20 26 26 H 1.48505 * 109.46796 * 89.99750 * 25 23 21 27 27 H 1.48499 * 109.47288 * 209.99294 * 25 23 21 28 28 H 1.48490 * 109.47270 * 329.99750 * 25 23 21 29 29 C 1.48559 * 104.21875 * 319.89505 * 16 15 13 30 30 C 1.53005 * 117.44348 * 154.83736 * 11 10 8 31 31 H 1.08992 * 119.52640 * 355.86531 * 30 11 10 32 32 H 1.08998 * 109.46676 * 299.99866 * 1 2 3 33 33 H 1.09001 * 109.46767 * 59.99963 * 1 2 3 34 34 H 1.08994 * 109.46771 * 179.97438 * 1 2 3 35 35 H 1.08998 * 109.46676 * 240.00134 * 2 1 3 36 36 H 1.09001 * 109.46767 * 120.00036 * 2 1 3 37 37 H 1.09008 * 109.46897 * 180.02562 * 5 3 2 38 38 H 1.08996 * 109.47153 * 299.99606 * 5 3 2 39 39 H 1.08999 * 109.47209 * 60.00392 * 5 3 2 40 40 H 1.08998 * 109.47583 * 60.00105 * 7 6 3 41 41 H 1.09001 * 109.46965 * 300.00070 * 7 6 3 42 42 H 0.97007 * 119.99599 * 0.02562 * 10 8 7 43 43 H 1.09002 * 110.91244 * 328.26738 * 15 13 11 44 44 H 1.08997 * 109.95781 * 205.92172 * 15 13 11 45 45 H 1.09001 * 109.47436 * 65.41568 * 17 16 15 46 46 H 1.08995 * 109.47436 * 185.41507 * 17 16 15 47 47 H 0.97005 * 119.99710 * 359.97438 * 20 18 17 48 48 H 0.97002 * 120.00151 * 180.02562 * 24 23 21 49 49 H 1.09006 * 110.41217 * 280.70359 * 29 16 15 50 50 H 1.08997 * 110.41336 * 158.26460 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5649 1.4443 0.1258 6 8 1.6620 2.0814 -1.2210 7 6 1.4560 3.4903 -1.1003 8 6 1.0628 4.0571 -2.4401 9 8 0.9687 3.3267 -3.4036 10 7 0.8156 5.3759 -2.5676 11 6 0.4339 5.9270 -3.8701 12 1 0.2159 5.1923 -4.6453 13 6 1.1005 7.2338 -4.3047 14 1 1.8755 7.6757 -3.6785 15 6 1.0368 7.5684 -5.8434 16 7 -0.2496 8.2905 -6.0181 17 6 -0.6895 8.2509 -7.4191 18 6 0.4081 8.7808 -8.3054 19 8 1.4541 9.1542 -7.8179 20 7 0.2275 8.8398 -9.6398 21 6 1.2258 9.3223 -10.4459 22 1 2.1571 9.6548 -10.0119 23 6 1.0398 9.3826 -11.8216 24 7 1.9969 9.8447 -12.5945 25 14 -0.5709 8.8068 -12.5724 26 1 -1.5192 9.9473 -12.6441 27 1 -0.3208 8.2843 -13.9398 28 1 -1.1530 7.7312 -11.7303 29 6 -1.2002 7.5600 -5.1408 30 6 -0.3815 7.2217 -3.8765 31 1 -0.7096 7.6545 -2.9315 32 1 -0.3632 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3633 -1.0276 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8900 37 1 3.9282 2.4720 0.1262 38 1 3.8532 0.9570 1.0571 39 1 3.9995 0.9053 -0.7161 40 1 2.3769 3.9644 -0.7609 41 1 0.6619 3.6808 -0.3783 42 1 0.8912 5.9602 -1.7970 43 1 1.0451 6.6565 -6.4405 44 1 1.8735 8.2101 -6.1195 45 1 -0.9181 7.2226 -7.6992 46 1 -1.5812 8.8665 -7.5375 47 1 -0.6089 8.5407 -10.0296 48 1 1.8669 9.8871 -13.5548 49 1 -1.5421 6.6467 -5.6279 50 1 -2.0479 8.1961 -4.8859 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114152854.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:58:57 Heat of formation + Delta-G solvation = -99.047218 kcal Electronic energy + Delta-G solvation = -28793.739636 eV Core-core repulsion = 24628.367935 eV Total energy + Delta-G solvation = -4165.371701 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.51618 -40.68243 -39.80772 -39.02592 -36.45459 -35.81319 -34.74306 -33.88461 -33.64805 -30.82063 -29.67975 -29.22627 -28.52777 -26.35384 -24.58477 -23.63635 -22.07485 -21.98216 -21.74555 -21.37535 -21.20053 -20.13726 -18.37290 -18.22484 -17.71489 -17.44282 -17.00733 -16.84707 -16.39291 -16.28668 -15.84488 -15.46096 -15.30690 -14.97626 -14.89225 -14.78346 -14.47229 -14.42708 -14.20102 -14.07010 -13.79055 -13.68423 -13.30908 -13.20741 -12.98397 -12.97419 -12.57597 -12.54741 -12.42742 -12.36106 -12.26096 -12.00967 -11.95106 -11.91815 -11.50942 -11.47290 -11.13586 -10.94501 -10.59292 -10.31795 -10.25647 -9.83667 -9.42750 -8.43082 -6.03937 1.28946 1.33843 1.42560 1.42800 1.60184 1.91320 2.21255 2.55821 2.74290 2.91510 3.11986 3.19279 3.56157 3.65154 3.68860 3.78906 3.90232 4.02266 4.06242 4.14818 4.17955 4.20835 4.26415 4.31123 4.33635 4.43787 4.47289 4.51188 4.61927 4.67375 4.72440 4.79260 4.82571 4.97109 5.05612 5.10857 5.11917 5.20507 5.21976 5.29819 5.39719 5.43590 5.50941 5.77335 5.86630 6.00414 6.16075 6.48785 6.56994 6.86028 7.15773 7.36481 7.93196 8.74397 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019598 B = 0.001723 C = 0.001690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.361999 B =16242.422798 C =16562.193425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C 0.079 3.921 4 H 0.087 0.913 5 C -0.176 4.176 6 O -0.391 6.391 7 C 0.049 3.951 8 C 0.511 3.489 9 O -0.575 6.575 10 N -0.681 5.681 11 C 0.105 3.895 12 H 0.106 0.894 13 C -0.171 4.171 14 H 0.135 0.865 15 C 0.063 3.937 16 N -0.502 5.502 17 C 0.041 3.959 18 C 0.448 3.552 19 O -0.605 6.605 20 N -0.590 5.590 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.234 1.234 29 C 0.057 3.943 30 C -0.141 4.141 31 H 0.152 0.848 32 H 0.066 0.934 33 H 0.038 0.962 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.047 0.953 40 H 0.107 0.893 41 H 0.115 0.885 42 H 0.423 0.577 43 H 0.024 0.976 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.128 0.872 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.052 0.948 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.436 -15.550 31.601 36.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.160 4.160 3 C 0.022 3.978 4 H 0.105 0.895 5 C -0.234 4.234 6 O -0.311 6.311 7 C -0.030 4.030 8 C 0.299 3.701 9 O -0.453 6.453 10 N -0.333 5.333 11 C -0.002 4.002 12 H 0.123 0.877 13 C -0.191 4.191 14 H 0.153 0.847 15 C -0.065 4.065 16 N -0.227 5.227 17 C -0.090 4.090 18 C 0.236 3.764 19 O -0.489 6.489 20 N -0.231 5.231 21 C -0.458 4.458 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.574 5.574 25 Si 0.784 3.216 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.158 1.158 29 C -0.070 4.070 30 C -0.161 4.161 31 H 0.170 0.830 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.066 0.934 40 H 0.125 0.875 41 H 0.133 0.867 42 H 0.262 0.738 43 H 0.042 0.958 44 H 0.096 0.904 45 H 0.093 0.907 46 H 0.146 0.854 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.071 0.929 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.704 -15.323 31.020 35.676 hybrid contribution -0.034 -0.410 -1.216 1.283 sum -8.738 -15.733 29.804 34.816 Atomic orbital electron populations 1.21721 0.95463 1.01942 1.01671 1.21683 0.96585 0.94788 1.02956 1.22444 0.94896 0.94251 0.86201 0.89483 1.22321 0.95435 1.02782 1.02843 1.88045 1.89817 1.18951 1.34243 1.22340 1.03943 0.83674 0.93087 1.21064 0.75910 0.81897 0.91221 1.90738 1.52283 1.59948 1.42317 1.44983 1.69439 1.07975 1.10915 1.21556 1.01595 0.89548 0.87549 0.87658 1.24611 0.98021 1.01140 0.95375 0.84745 1.23200 0.94470 0.95598 0.93270 1.65378 1.02638 1.49636 1.05046 1.22103 0.96900 1.01820 0.88209 1.20820 0.89899 0.83088 0.82615 1.90498 1.30953 1.53141 1.74335 1.42020 1.16267 1.58776 1.06069 1.19002 0.96746 1.40636 0.89377 0.92566 1.26105 1.02711 0.96795 0.95678 1.69803 1.35378 1.46385 1.05786 0.85375 0.77440 0.80019 0.78761 1.17871 1.20020 1.15760 1.22856 0.95512 0.97381 0.91270 1.23917 0.92632 0.98796 1.00736 0.82999 0.91525 0.94265 0.92249 0.92860 0.88402 0.91940 0.89555 0.93421 0.87505 0.86694 0.73840 0.95792 0.90441 0.90671 0.85415 0.77510 0.91121 0.92950 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.81 71.99 0.71 -1.07 16 2 C -0.12 -1.39 5.64 30.60 0.17 -1.22 16 3 C 0.08 0.89 2.72 30.59 0.08 0.97 16 4 H 0.09 0.52 7.79 -2.38 -0.02 0.50 16 5 C -0.18 -1.74 9.53 71.98 0.69 -1.05 16 6 O -0.39 -7.35 9.06 -129.94 -1.18 -8.53 16 7 C 0.05 0.60 6.23 71.24 0.44 1.04 16 8 C 0.51 10.68 7.91 87.66 0.69 11.37 16 9 O -0.57 -19.14 16.06 16.02 0.26 -18.88 16 10 N -0.68 -10.54 5.56 -442.54 -2.46 -13.00 16 11 C 0.10 2.24 5.92 44.99 0.27 2.51 16 12 H 0.11 2.94 7.40 -2.39 -0.02 2.92 16 13 C -0.17 -4.12 7.32 -8.74 -0.06 -4.18 16 14 H 0.13 2.86 8.14 -2.39 -0.02 2.84 16 15 C 0.06 2.14 5.17 87.61 0.45 2.59 16 16 N -0.50 -15.50 5.34 -879.17 -4.69 -20.19 16 17 C 0.04 1.31 5.55 85.56 0.47 1.79 16 18 C 0.45 20.69 7.50 87.66 0.66 21.35 16 19 O -0.60 -33.62 13.24 -3.07 -0.04 -33.66 16 20 N -0.59 -28.43 5.09 -306.98 -1.56 -29.99 16 21 C -0.33 -19.54 10.16 84.04 0.85 -18.69 16 22 H 0.06 3.97 7.39 -2.91 -0.02 3.95 16 23 C -0.01 -0.80 5.50 84.93 0.47 -0.33 16 24 N -0.93 -56.92 13.96 21.66 0.30 -56.62 16 25 Si 0.96 39.51 27.74 68.60 1.90 41.41 16 26 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 27 H -0.28 -11.20 7.11 99.48 0.71 -10.50 16 28 H -0.23 -8.18 6.52 99.48 0.65 -7.54 16 29 C 0.06 1.19 6.30 86.45 0.54 1.74 16 30 C -0.14 -2.54 6.97 -9.89 -0.07 -2.61 16 31 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.04 0.66 7.82 -2.39 -0.02 0.64 16 34 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.06 0.54 7.87 -2.38 -0.02 0.53 16 38 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 39 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.11 0.73 7.87 -2.39 -0.02 0.71 16 41 H 0.12 0.59 8.09 -2.39 -0.02 0.57 16 42 H 0.42 2.92 8.83 -92.70 -0.82 2.10 16 43 H 0.02 0.87 8.00 -2.39 -0.02 0.85 16 44 H 0.08 3.33 6.04 -2.39 -0.01 3.32 16 45 H 0.08 2.10 7.88 -2.39 -0.02 2.08 16 46 H 0.13 3.29 8.14 -2.39 -0.02 3.27 16 47 H 0.39 15.60 5.76 -92.70 -0.53 15.07 16 48 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 49 H 0.05 1.07 7.82 -2.38 -0.02 1.05 16 50 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -88.36 407.27 -1.56 -89.92 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.46 Total: 35.33 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.37 Total: 14.20 kcal Atomic # 7 Polarization: -111.39 SS G_CDS: -8.41 Total: -119.80 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -0.96 Total: -61.06 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 1.90 Total: 41.41 kcal Total: -88.36 -1.56 -89.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114152854.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.123 kcal (2) G-P(sol) polarization free energy of solvation -88.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds