Wall clock time and date at job start Tue Mar 31 2020 22:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47033 * 2 1 4 4 C 1.53001 * 109.46931 * 240.00265 * 2 1 3 5 5 O 1.42896 * 109.46877 * 120.00087 * 2 1 3 6 6 C 1.42899 * 114.00152 * 60.00355 * 5 2 1 7 7 C 1.50702 * 109.47346 * 179.97438 * 6 5 2 8 8 O 1.21282 * 119.99647 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99816 * 180.02562 * 9 7 6 11 11 H 1.08993 * 115.49524 * 9.61168 * 10 9 7 12 12 C 1.57018 * 118.25111 * 223.47048 * 10 9 7 13 13 H 1.08998 * 121.18711 * 3.75352 * 12 10 9 14 14 C 1.54377 * 118.21057 * 161.86611 * 12 10 9 15 15 N 1.48550 * 104.59714 * 86.26158 * 14 12 10 16 16 C 1.46900 * 111.00124 * 200.96017 * 15 14 12 17 17 C 1.50704 * 109.47180 * 285.41690 * 16 15 14 18 18 O 1.21287 * 119.99706 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99864 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99440 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00237 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99524 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00438 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00002 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47111 * 59.99848 * 24 22 20 26 26 H 1.48495 * 109.47656 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46844 * 300.00252 * 24 22 20 28 28 C 1.48561 * 104.22474 * 320.51503 * 15 14 12 29 29 C 1.53000 * 117.44177 * 155.00206 * 10 9 7 30 30 H 1.09002 * 119.52778 * 355.90387 * 29 10 9 31 31 H 1.08993 * 109.46854 * 299.99866 * 1 2 3 32 32 H 1.09001 * 109.47126 * 59.99729 * 1 2 3 33 33 H 1.08996 * 109.47188 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46992 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47273 * 300.00428 * 3 2 1 36 36 H 1.09007 * 109.47056 * 60.00250 * 3 2 1 37 37 H 1.08990 * 109.47328 * 299.99631 * 4 2 1 38 38 H 1.08996 * 109.47194 * 60.00542 * 4 2 1 39 39 H 1.09005 * 109.46641 * 180.02562 * 4 2 1 40 40 H 1.09000 * 109.46941 * 59.99656 * 6 5 2 41 41 H 1.08997 * 109.47078 * 299.99761 * 6 5 2 42 42 H 0.96998 * 120.00017 * 359.97438 * 9 7 6 43 43 H 1.09007 * 110.40921 * 327.47874 * 14 12 10 44 44 H 1.09003 * 110.51007 * 205.09750 * 14 12 10 45 45 H 1.09001 * 109.47233 * 45.41710 * 16 15 14 46 46 H 1.08997 * 109.47696 * 165.42130 * 16 15 14 47 47 H 0.96999 * 120.00117 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00329 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.41547 * 280.70846 * 28 15 14 50 50 H 1.09001 * 110.41241 * 158.26019 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1420 -2.6448 2.5251 8 8 2.8327 -1.9784 3.2666 9 7 1.8729 -3.9301 2.8285 10 6 2.4143 -4.5222 4.0543 11 1 2.8841 -3.8225 4.7454 12 6 3.0202 -5.9686 3.9763 13 1 3.0954 -6.4986 3.0269 14 6 3.9562 -6.4301 5.1140 15 7 3.0433 -6.9709 6.1536 16 6 3.6972 -6.9921 7.4689 17 6 4.6975 -8.1183 7.5147 18 8 4.8509 -8.8328 6.5466 19 7 5.4222 -8.3310 8.6309 20 6 6.3326 -9.3553 8.6723 21 1 6.4692 -9.9915 7.8103 22 6 7.0794 -9.5749 9.8232 23 7 6.9128 -8.8012 10.8722 24 14 8.3203 -10.9701 9.8794 25 1 9.3426 -10.7661 8.8218 26 1 8.9807 -10.9920 11.2093 27 1 7.6235 -12.2616 9.6519 28 6 1.8889 -6.0359 6.1480 29 6 1.6601 -5.7094 4.6566 30 1 0.7219 -6.0340 4.2066 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9564 0.8901 37 1 1.6768 -1.7488 -1.2493 38 1 1.6768 -0.2073 -2.1392 39 1 3.1301 -0.7216 -1.2490 40 1 1.9492 -2.5915 0.4006 41 1 0.4959 -2.0778 1.2906 42 1 1.3202 -4.4629 2.2355 43 1 4.5220 -5.5853 5.5069 44 1 4.6328 -7.2079 4.7600 45 1 4.2093 -6.0443 7.6354 46 1 2.9469 -7.1409 8.2454 47 1 5.2997 -7.7594 9.4050 48 1 7.4339 -8.9547 11.6758 49 1 2.1310 -5.1295 6.7028 50 1 1.0074 -6.5177 6.5712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114166636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:46 Heat of formation + Delta-G solvation = -73.651762 kcal Electronic energy + Delta-G solvation = -28739.347358 eV Core-core repulsion = 24575.076887 eV Total energy + Delta-G solvation = -4164.270471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.50124 -39.73517 -38.75090 -37.82473 -35.12844 -33.88967 -33.84664 -32.64793 -31.16610 -29.01054 -28.30694 -27.94069 -27.75181 -27.01441 -24.62439 -22.60729 -21.08111 -20.90769 -20.39556 -20.21599 -19.08656 -17.83641 -17.67713 -17.27552 -16.49465 -16.38760 -15.90898 -15.43705 -15.07812 -14.99106 -14.69167 -14.49323 -14.01006 -13.98536 -13.74377 -13.65073 -13.47280 -13.36430 -12.84556 -12.70717 -12.56553 -12.41577 -12.34924 -12.22784 -12.08158 -11.90974 -11.78201 -11.46454 -11.39678 -11.26124 -11.11564 -11.01416 -10.76265 -10.41610 -10.19001 -10.15181 -10.07564 -10.03070 -9.45155 -8.92618 -8.48197 -7.99506 -7.91260 -6.37827 -3.78643 2.22194 2.30146 3.22806 3.28200 3.32519 3.44019 3.52517 3.94226 4.00726 4.19662 4.26108 4.31137 4.43001 4.49588 4.53933 4.58379 4.62128 4.74033 4.75808 4.97500 5.02480 5.04844 5.19857 5.20430 5.23361 5.28332 5.29951 5.35218 5.35829 5.51943 5.53320 5.61554 5.70131 5.74541 5.78515 5.80261 5.86517 6.00299 6.02800 6.23436 6.30951 6.40248 6.67969 7.06687 7.13321 7.20868 7.58474 7.89439 8.09805 8.66056 9.21966 9.58607 10.10788 10.79942 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.001579 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.142569 B =17724.988319 C =17990.229021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.104 3.896 3 C -0.138 4.138 4 C -0.181 4.181 5 O -0.350 6.350 6 C 0.041 3.959 7 C 0.517 3.483 8 O -0.513 6.513 9 N -0.698 5.698 10 C 0.105 3.895 11 H 0.136 0.864 12 C -0.164 4.164 13 H 0.120 0.880 14 C 0.067 3.933 15 N -0.483 5.483 16 C 0.034 3.966 17 C 0.446 3.554 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.059 3.941 29 C -0.163 4.163 30 H 0.117 0.883 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.402 0.598 43 H 0.043 0.957 44 H 0.103 0.897 45 H 0.052 0.948 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.046 0.954 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.972 17.527 -21.309 31.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.065 3.935 3 C -0.195 4.195 4 C -0.238 4.238 5 O -0.269 6.269 6 C -0.039 4.039 7 C 0.303 3.697 8 O -0.386 6.386 9 N -0.349 5.349 10 C -0.001 4.001 11 H 0.153 0.847 12 C -0.185 4.185 13 H 0.138 0.862 14 C -0.061 4.061 15 N -0.207 5.207 16 C -0.098 4.098 17 C 0.231 3.769 18 O -0.461 6.461 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.069 4.069 29 C -0.183 4.183 30 H 0.135 0.865 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.086 0.914 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.236 0.764 43 H 0.061 0.939 44 H 0.121 0.879 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.064 0.936 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -15.294 17.096 -21.192 31.229 hybrid contribution 0.242 -0.090 0.310 0.404 sum -15.051 17.006 -20.882 30.851 Atomic orbital electron populations 1.22464 0.95543 1.02559 1.03239 1.21617 0.93252 0.93537 0.85072 1.21749 1.02308 0.92817 1.02613 1.22466 1.02615 1.00874 0.97888 1.88119 1.74053 1.21584 1.43101 1.22181 0.99810 0.85732 0.96187 1.20273 0.80822 0.81476 0.87162 1.90758 1.36676 1.60667 1.50507 1.45101 1.53347 1.11905 1.24541 1.22416 1.00208 0.89268 0.88243 0.84677 1.24654 0.95910 0.97343 1.00548 0.86215 1.22678 0.94352 0.98613 0.90410 1.65290 1.06034 1.45043 1.04322 1.22066 0.97715 0.98236 0.91795 1.19679 0.84807 0.87682 0.84729 1.90505 1.69755 1.49934 1.35897 1.41851 1.35089 1.30017 1.13296 1.19645 1.14483 1.08253 1.00464 0.87994 1.25247 0.98864 0.98786 0.95035 1.69603 1.41986 1.38938 1.03872 0.85922 0.80181 0.80910 0.77211 1.19954 1.21009 1.19928 1.22683 0.95974 0.95023 0.93248 1.23852 0.97101 1.01233 0.96110 0.86478 0.91426 0.91206 0.92197 0.91529 0.90948 0.91568 0.92186 0.91200 0.91378 0.89945 0.89996 0.76355 0.93894 0.87858 0.92977 0.89167 0.77509 0.91865 0.93558 0.89361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.88 8.25 37.16 0.31 -0.58 16 2 C 0.10 0.69 1.14 -90.62 -0.10 0.58 16 3 C -0.14 -0.84 8.84 37.16 0.33 -0.51 16 4 C -0.18 -0.92 8.25 37.16 0.31 -0.61 16 5 O -0.35 -3.50 9.52 -55.14 -0.52 -4.02 16 6 C 0.04 0.31 5.62 36.01 0.20 0.51 16 7 C 0.52 5.64 7.91 -10.98 -0.09 5.55 16 8 O -0.51 -8.20 16.07 -14.35 -0.23 -8.43 16 9 N -0.70 -6.11 5.60 -51.70 -0.29 -6.40 16 10 C 0.11 1.17 6.15 -65.75 -0.40 0.77 16 11 H 0.14 1.80 7.40 -51.93 -0.38 1.42 16 12 C -0.16 -2.02 7.26 -87.06 -0.63 -2.65 16 13 H 0.12 1.35 8.14 -51.93 -0.42 0.92 16 14 C 0.07 1.08 5.75 -2.19 -0.01 1.07 16 15 N -0.48 -8.13 4.98 -231.41 -1.15 -9.28 16 16 C 0.03 0.61 5.32 -4.97 -0.03 0.58 16 17 C 0.45 10.69 7.63 -10.98 -0.08 10.61 16 18 O -0.58 -15.79 14.80 5.55 0.08 -15.70 16 19 N -0.57 -14.54 5.29 -10.96 -0.06 -14.60 16 20 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.83 13.05 55.50 0.72 -24.10 16 24 Si 0.93 21.30 29.55 -169.99 -5.02 16.28 16 25 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 28 C 0.06 0.75 6.25 -2.18 -0.01 0.74 16 29 C -0.16 -1.77 6.91 -89.23 -0.62 -2.38 16 30 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.24 6.54 -51.93 -0.34 -0.10 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.25 6.54 -51.93 -0.34 -0.09 16 38 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.44 6.42 -51.93 -0.33 0.10 16 41 H 0.08 0.41 6.42 -51.93 -0.33 0.08 16 42 H 0.40 2.14 8.83 -40.82 -0.36 1.78 16 43 H 0.04 0.69 7.75 -51.93 -0.40 0.28 16 44 H 0.10 1.94 7.23 -51.93 -0.38 1.57 16 45 H 0.05 0.87 7.77 -51.93 -0.40 0.47 16 46 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 47 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 48 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 49 H 0.05 0.57 7.99 -51.93 -0.41 0.15 16 50 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 406.38 15.07 6.12 6.12 Total: -1.00 -35.49 406.38 -9.59 -45.08 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: -8.17 Total: 9.45 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -1.08 Total: 5.60 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: -0.77 Total: -54.38 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.67 Total: -28.15 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -35.49 -9.59 -45.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114166636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.575 kcal (2) G-P(sol) polarization free energy of solvation -35.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds