Wall clock time and date at job start Tue Mar 31 2020 22:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.47033 * 2 1 4 4 C 1.53001 * 109.46931 * 240.00265 * 2 1 3 5 5 O 1.42896 * 109.46877 * 120.00087 * 2 1 3 6 6 C 1.42899 * 114.00152 * 60.00355 * 5 2 1 7 7 C 1.50702 * 109.47346 * 179.97438 * 6 5 2 8 8 O 1.21282 * 119.99647 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00030 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99816 * 180.02562 * 9 7 6 11 11 H 1.08993 * 115.49524 * 9.61168 * 10 9 7 12 12 C 1.57018 * 118.25111 * 223.47048 * 10 9 7 13 13 H 1.08998 * 121.18711 * 3.75352 * 12 10 9 14 14 C 1.54377 * 118.21057 * 161.86611 * 12 10 9 15 15 N 1.48550 * 104.59714 * 86.26158 * 14 12 10 16 16 C 1.46900 * 111.00124 * 200.96017 * 15 14 12 17 17 C 1.50704 * 109.47180 * 285.41690 * 16 15 14 18 18 O 1.21287 * 119.99706 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99864 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99440 * 180.02562 * 19 17 16 21 21 H 1.07995 * 120.00237 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99524 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00438 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00002 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47111 * 59.99848 * 24 22 20 26 26 H 1.48495 * 109.47656 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46844 * 300.00252 * 24 22 20 28 28 C 1.48561 * 104.22474 * 320.51503 * 15 14 12 29 29 C 1.53000 * 117.44177 * 155.00206 * 10 9 7 30 30 H 1.09002 * 119.52778 * 355.90387 * 29 10 9 31 31 H 1.08993 * 109.46854 * 299.99866 * 1 2 3 32 32 H 1.09001 * 109.47126 * 59.99729 * 1 2 3 33 33 H 1.08996 * 109.47188 * 179.97438 * 1 2 3 34 34 H 1.08996 * 109.46992 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47273 * 300.00428 * 3 2 1 36 36 H 1.09007 * 109.47056 * 60.00250 * 3 2 1 37 37 H 1.08990 * 109.47328 * 299.99631 * 4 2 1 38 38 H 1.08996 * 109.47194 * 60.00542 * 4 2 1 39 39 H 1.09005 * 109.46641 * 180.02562 * 4 2 1 40 40 H 1.09000 * 109.46941 * 59.99656 * 6 5 2 41 41 H 1.08997 * 109.47078 * 299.99761 * 6 5 2 42 42 H 0.96998 * 120.00017 * 359.97438 * 9 7 6 43 43 H 1.09007 * 110.40921 * 327.47874 * 14 12 10 44 44 H 1.09003 * 110.51007 * 205.09750 * 14 12 10 45 45 H 1.09001 * 109.47233 * 45.41710 * 16 15 14 46 46 H 1.08997 * 109.47696 * 165.42130 * 16 15 14 47 47 H 0.96999 * 120.00117 * 0.02562 * 19 17 16 48 48 H 0.96999 * 120.00329 * 179.97438 * 23 22 20 49 49 H 1.08997 * 110.41547 * 280.70846 * 28 15 14 50 50 H 1.09001 * 110.41241 * 158.26019 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 2.0063 -0.6736 1.1667 6 6 1.5847 -2.0355 1.2644 7 6 2.1420 -2.6448 2.5251 8 8 2.8327 -1.9784 3.2666 9 7 1.8729 -3.9301 2.8285 10 6 2.4143 -4.5222 4.0543 11 1 2.8841 -3.8225 4.7454 12 6 3.0202 -5.9686 3.9763 13 1 3.0954 -6.4986 3.0269 14 6 3.9562 -6.4301 5.1140 15 7 3.0433 -6.9709 6.1536 16 6 3.6972 -6.9921 7.4689 17 6 4.6975 -8.1183 7.5147 18 8 4.8509 -8.8328 6.5466 19 7 5.4222 -8.3310 8.6309 20 6 6.3326 -9.3553 8.6723 21 1 6.4692 -9.9915 7.8103 22 6 7.0794 -9.5749 9.8232 23 7 6.9128 -8.8012 10.8722 24 14 8.3203 -10.9701 9.8794 25 1 9.3426 -10.7661 8.8218 26 1 8.9807 -10.9920 11.2093 27 1 7.6235 -12.2616 9.6519 28 6 1.8889 -6.0359 6.1480 29 6 1.6601 -5.7094 4.6566 30 1 0.7219 -6.0340 4.2066 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9564 0.8901 37 1 1.6768 -1.7488 -1.2493 38 1 1.6768 -0.2073 -2.1392 39 1 3.1301 -0.7216 -1.2490 40 1 1.9492 -2.5915 0.4006 41 1 0.4959 -2.0778 1.2906 42 1 1.3202 -4.4629 2.2355 43 1 4.5220 -5.5853 5.5069 44 1 4.6328 -7.2079 4.7600 45 1 4.2093 -6.0443 7.6354 46 1 2.9469 -7.1409 8.2454 47 1 5.2997 -7.7594 9.4050 48 1 7.4339 -8.9547 11.6758 49 1 2.1310 -5.1295 6.7028 50 1 1.0074 -6.5177 6.5712 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114166636.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:45 Heat of formation + Delta-G solvation = -100.687345 kcal Electronic energy + Delta-G solvation = -28740.519709 eV Core-core repulsion = 24575.076887 eV Total energy + Delta-G solvation = -4165.442822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.43765 -40.68979 -39.82178 -39.29225 -36.34115 -35.77995 -34.42264 -33.75932 -33.20885 -29.79521 -29.42669 -28.81563 -28.28141 -27.83274 -26.45600 -23.81109 -22.05518 -21.82590 -21.28940 -20.92719 -20.86774 -19.86346 -18.44059 -18.10916 -17.65469 -17.17280 -17.01243 -16.62708 -16.45935 -16.22383 -15.96486 -15.57173 -15.48904 -15.02945 -14.83436 -14.57989 -14.44162 -14.18119 -14.09274 -13.84115 -13.55078 -13.36722 -13.15306 -13.11526 -12.94275 -12.87113 -12.75698 -12.64972 -12.50956 -12.44029 -12.42189 -12.21455 -12.12409 -11.90041 -11.59946 -11.48379 -11.14124 -10.90770 -10.58741 -10.33022 -10.01104 -9.80954 -9.39242 -8.46131 -5.95149 1.39449 1.39773 1.41144 1.52325 1.57394 2.05487 2.28398 2.59104 2.72378 2.93948 3.20187 3.36553 3.51299 3.63058 3.68842 3.80244 3.90455 3.95342 4.08581 4.08817 4.15647 4.24365 4.26317 4.27788 4.39758 4.49147 4.52464 4.59913 4.67247 4.68384 4.76133 4.82015 4.82349 4.90871 4.95380 4.95845 5.08571 5.13716 5.17968 5.33599 5.38188 5.39131 5.40531 5.79150 5.85567 6.06356 6.16586 6.47890 6.60796 7.12923 7.14266 7.56331 8.12356 8.71116 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027822 B = 0.001579 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.142569 B =17724.988319 C =17990.229021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 C -0.140 4.140 4 C -0.179 4.179 5 O -0.388 6.388 6 C 0.044 3.956 7 C 0.513 3.487 8 O -0.573 6.573 9 N -0.679 5.679 10 C 0.112 3.888 11 H 0.111 0.889 12 C -0.172 4.172 13 H 0.133 0.867 14 C 0.065 3.935 15 N -0.503 5.503 16 C 0.046 3.954 17 C 0.442 3.558 18 O -0.615 6.615 19 N -0.575 5.575 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.055 3.945 29 C -0.139 4.139 30 H 0.150 0.850 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.072 0.928 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.054 0.946 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.053 0.947 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.423 0.577 43 H 0.035 0.965 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.114 0.886 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.053 0.947 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.186 17.647 -22.729 34.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.058 3.942 3 C -0.198 4.198 4 C -0.236 4.236 5 O -0.308 6.308 6 C -0.035 4.035 7 C 0.301 3.699 8 O -0.451 6.451 9 N -0.331 5.331 10 C 0.005 3.995 11 H 0.129 0.871 12 C -0.192 4.192 13 H 0.151 0.849 14 C -0.063 4.063 15 N -0.228 5.228 16 C -0.086 4.086 17 C 0.229 3.771 18 O -0.501 6.501 19 N -0.213 5.213 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.072 4.072 29 C -0.159 4.159 30 H 0.168 0.832 31 H 0.075 0.925 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.071 0.929 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.262 0.738 43 H 0.053 0.947 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.071 0.929 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.557 17.212 -22.634 33.418 hybrid contribution 0.918 -0.087 0.726 1.174 sum -16.639 17.125 -21.907 32.404 Atomic orbital electron populations 1.22442 0.94037 1.03512 1.03498 1.21842 0.94456 0.93286 0.84644 1.21810 1.01481 0.93297 1.03165 1.22452 1.01747 1.01675 0.97733 1.88080 1.75056 1.22818 1.44854 1.22308 1.01310 0.85019 0.94832 1.21022 0.79741 0.81514 0.87634 1.90736 1.39532 1.62198 1.52633 1.44926 1.52737 1.11531 1.23896 1.22119 1.00080 0.88372 0.88931 0.87079 1.24502 0.96087 0.98610 1.00008 0.84910 1.22533 0.94809 0.97086 0.91870 1.65242 1.07026 1.47062 1.03430 1.21921 0.96938 0.96074 0.93668 1.20715 0.84694 0.88243 0.83398 1.90474 1.70901 1.51694 1.37050 1.41926 1.35371 1.29897 1.14075 1.19634 1.16609 1.09614 1.00555 0.90309 1.26044 1.00056 1.00929 0.94246 1.69668 1.42492 1.39839 1.04187 0.84979 0.77741 0.77819 0.77721 1.19805 1.19445 1.19624 1.22809 0.94759 0.94678 0.94957 1.23919 0.97413 0.99868 0.94701 0.83247 0.92524 0.89610 0.90874 0.92901 0.88687 0.92705 0.90935 0.89563 0.92776 0.87343 0.86939 0.73849 0.94703 0.91547 0.91535 0.86774 0.77072 0.91316 0.92881 0.87549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 8.25 71.98 0.59 -0.70 16 2 C 0.10 1.12 1.14 -10.79 -0.01 1.11 16 3 C -0.14 -1.64 8.84 71.98 0.64 -1.01 16 4 C -0.18 -1.43 8.25 71.98 0.59 -0.83 16 5 O -0.39 -7.46 9.52 -129.94 -1.24 -8.70 16 6 C 0.04 0.57 5.62 71.24 0.40 0.97 16 7 C 0.51 10.61 7.91 87.66 0.69 11.30 16 8 O -0.57 -18.72 16.07 16.00 0.26 -18.46 16 9 N -0.68 -10.34 5.60 -435.88 -2.44 -12.78 16 10 C 0.11 2.35 6.15 46.40 0.29 2.64 16 11 H 0.11 2.97 7.40 -2.39 -0.02 2.96 16 12 C -0.17 -4.05 7.26 -8.49 -0.06 -4.11 16 13 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 14 C 0.06 2.14 5.75 86.45 0.50 2.64 16 15 N -0.50 -16.68 4.98 -886.05 -4.41 -21.09 16 16 C 0.05 1.65 5.32 85.56 0.46 2.10 16 17 C 0.44 21.79 7.63 87.66 0.67 22.46 16 18 O -0.62 -34.98 14.80 -3.05 -0.05 -35.03 16 19 N -0.58 -30.40 5.29 -306.98 -1.62 -32.02 16 20 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.83 16 22 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 23 N -0.92 -50.65 13.05 21.66 0.28 -50.37 16 24 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 C 0.06 1.29 6.25 86.45 0.54 1.83 16 29 C -0.14 -2.63 6.91 -9.90 -0.07 -2.70 16 30 H 0.15 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.33 6.54 -2.39 -0.02 0.31 16 34 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 37 H 0.07 0.38 6.54 -2.39 -0.02 0.37 16 38 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 39 H 0.05 0.58 8.14 -2.38 -0.02 0.57 16 40 H 0.11 0.80 6.42 -2.39 -0.02 0.79 16 41 H 0.11 0.73 6.42 -2.39 -0.02 0.71 16 42 H 0.42 2.92 8.83 -92.71 -0.82 2.11 16 43 H 0.03 1.17 7.75 -2.38 -0.02 1.15 16 44 H 0.07 2.65 7.23 -2.39 -0.02 2.63 16 45 H 0.07 2.22 7.77 -2.39 -0.02 2.20 16 46 H 0.11 3.57 8.08 -2.39 -0.02 3.55 16 47 H 0.40 19.88 7.90 -92.71 -0.73 19.14 16 48 H 0.28 14.31 8.31 -92.71 -0.77 13.54 16 49 H 0.05 1.19 7.99 -2.39 -0.02 1.17 16 50 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -81.18 406.38 -1.27 -82.46 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -0.59 Total: 33.43 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.50 Total: 16.81 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -8.19 Total: -116.27 kcal Atomic # 8 Polarization: -61.16 SS G_CDS: -1.03 Total: -62.18 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -81.18 -1.27 -82.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114166636.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.229 kcal (2) G-P(sol) polarization free energy of solvation -81.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds