Wall clock time and date at job start Tue Mar 31 2020 22:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.47084 * 2 1 4 4 C 1.52993 * 109.47123 * 175.06312 * 3 2 1 5 5 H 1.09002 * 109.47486 * 305.26642 * 4 3 2 6 6 O 1.42902 * 109.47460 * 65.27024 * 4 3 2 7 7 C 1.42896 * 114.00198 * 209.41725 * 6 4 3 8 8 C 1.50701 * 109.47037 * 185.26823 * 4 3 2 9 9 O 1.21278 * 120.00450 * 244.72348 * 8 4 3 10 10 N 1.34783 * 119.99914 * 65.00361 * 8 4 3 11 11 C 1.46492 * 119.99979 * 179.72360 * 10 8 4 12 12 H 1.09002 * 115.52383 * 9.57694 * 11 10 8 13 13 C 1.53000 * 117.44447 * 224.22157 * 11 10 8 14 14 H 1.08999 * 119.52577 * 4.09737 * 13 11 10 15 15 C 1.54385 * 118.12801 * 160.68477 * 13 11 10 16 16 N 1.48555 * 104.59048 * 87.23606 * 15 13 11 17 17 C 1.46905 * 110.99638 * 200.95747 * 16 15 13 18 18 C 1.50691 * 109.47284 * 305.41809 * 17 16 15 19 19 O 1.21295 * 120.00326 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00046 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99966 * 180.02562 * 20 18 17 22 22 H 1.08001 * 120.00499 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00116 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00400 * 179.97438 * 23 21 20 25 25 Si 1.86797 * 119.99771 * 0.02562 * 23 21 20 26 26 H 1.48506 * 109.47587 * 89.99613 * 25 23 21 27 27 H 1.48502 * 109.47371 * 209.99597 * 25 23 21 28 28 H 1.48503 * 109.47188 * 329.99432 * 25 23 21 29 29 C 1.48559 * 104.22450 * 320.51216 * 16 15 13 30 30 C 1.53003 * 117.44348 * 154.99901 * 11 10 8 31 31 H 1.08997 * 119.52412 * 354.35015 * 30 11 10 32 32 H 1.09003 * 109.47058 * 60.00246 * 1 2 3 33 33 H 1.08998 * 109.46744 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47333 * 300.00533 * 1 2 3 35 35 H 1.08995 * 109.47644 * 239.99916 * 2 1 3 36 36 H 1.09003 * 109.47058 * 119.99754 * 2 1 3 37 37 H 1.08996 * 109.47168 * 55.05944 * 3 2 1 38 38 H 1.09001 * 109.47026 * 295.06140 * 3 2 1 39 39 H 1.08999 * 109.47352 * 304.84582 * 7 6 4 40 40 H 1.09002 * 109.47038 * 64.84992 * 7 6 4 41 41 H 1.09002 * 109.46933 * 184.84983 * 7 6 4 42 42 H 0.97000 * 119.99521 * 359.71915 * 10 8 4 43 43 H 1.08996 * 110.40999 * 328.45239 * 15 13 11 44 44 H 1.09002 * 110.51092 * 206.05876 * 15 13 11 45 45 H 1.08998 * 109.46886 * 65.41977 * 17 16 15 46 46 H 1.09008 * 109.46933 * 185.41561 * 17 16 15 47 47 H 0.96995 * 120.00458 * 359.97438 * 20 18 17 48 48 H 0.97000 * 120.00403 * 180.02562 * 24 23 21 49 49 H 1.08997 * 110.41327 * 280.70721 * 29 16 15 50 50 H 1.09008 * 110.41104 * 158.26143 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5649 1.4443 0.1241 5 1 3.8583 0.8757 1.0066 6 8 4.1384 0.8464 -1.0402 7 6 5.3900 0.1984 -0.8044 8 6 4.0566 2.8629 0.2543 9 8 4.7537 3.3452 -0.6131 10 7 3.7264 3.5939 1.3374 11 6 4.2094 4.9709 1.4668 12 1 4.6896 5.3854 0.5804 13 6 4.7549 5.4016 2.8298 14 1 4.8322 4.6692 3.6333 15 6 5.6661 6.6465 2.8887 16 7 4.7287 7.7900 3.0319 17 6 5.3636 9.0467 2.6128 18 6 6.6484 9.2396 3.3763 19 8 7.0009 8.4113 4.1893 20 7 7.4058 10.3323 3.1557 21 6 8.5750 10.5075 3.8500 22 1 8.8889 9.7701 4.5739 23 6 9.3561 11.6339 3.6222 24 7 10.4765 11.8020 4.2880 25 14 8.8129 12.9097 2.3707 26 1 7.9718 13.9339 3.0409 27 1 10.0081 13.5617 1.7777 28 1 8.0269 12.2481 1.2985 29 6 3.5922 7.4443 2.1398 30 6 3.3906 5.9264 2.3372 31 1 2.4399 5.5931 2.7531 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5139 0.8899 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 1.6062 1.9813 0.8424 38 1 1.7507 1.9302 -0.9309 39 1 6.0841 0.9040 -0.3479 40 1 5.2401 -0.6486 -0.1349 41 1 5.8004 -0.1544 -1.7506 42 1 3.1689 3.2082 2.0312 43 1 6.2420 6.7399 1.9680 44 1 6.3328 6.5914 3.7493 45 1 5.5780 9.0069 1.5448 46 1 4.6907 9.8796 2.8175 47 1 7.1242 10.9945 2.5054 48 1 11.0217 12.5885 4.1293 49 1 3.8435 7.6627 1.1020 50 1 2.6960 7.9887 2.4376 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114669083.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:28 Heat of formation + Delta-G solvation = -101.430907 kcal Electronic energy + Delta-G solvation = -29244.533919 eV Core-core repulsion = 25079.058854 eV Total energy + Delta-G solvation = -4165.475065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.67651 -40.89662 -39.86664 -38.48605 -36.47683 -35.93446 -35.60578 -33.87891 -33.64045 -30.90102 -29.40561 -29.18055 -27.34877 -26.57719 -25.61771 -23.53990 -22.15723 -22.03189 -21.56077 -21.38806 -21.21715 -20.13991 -18.56305 -18.35275 -17.71488 -17.42040 -16.85912 -16.69708 -16.39364 -16.22624 -15.93039 -15.64768 -15.46505 -15.33120 -14.97158 -14.90416 -14.43660 -14.42225 -14.21667 -14.11524 -13.79087 -13.40831 -13.27124 -13.21268 -13.00302 -12.98090 -12.56543 -12.43541 -12.41818 -12.36553 -12.08152 -12.02435 -11.99637 -11.91828 -11.61134 -11.51260 -11.48141 -11.12930 -10.39022 -10.32164 -10.26097 -9.85650 -9.42898 -8.43377 -6.04209 1.28645 1.33574 1.36396 1.42466 1.74896 1.90971 2.20928 2.54861 2.73057 2.74851 3.11380 3.16783 3.45717 3.61447 3.66798 3.80754 3.83286 3.89212 4.03498 4.17674 4.21411 4.24246 4.29861 4.33396 4.42285 4.46650 4.49403 4.52988 4.61069 4.67386 4.76734 4.78615 4.80997 4.92840 4.96110 5.02627 5.10955 5.20852 5.28859 5.36782 5.38270 5.50542 5.50862 5.76511 5.86296 5.95734 5.99952 6.43532 6.56679 6.85727 7.11143 7.36198 7.92831 8.74070 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.021695 B = 0.001882 C = 0.001816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.294060 B =14871.810057 C =15411.790090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.108 4.108 4 C 0.079 3.921 5 H 0.118 0.882 6 O -0.379 6.379 7 C 0.025 3.975 8 C 0.489 3.511 9 O -0.575 6.575 10 N -0.679 5.679 11 C 0.106 3.894 12 H 0.105 0.895 13 C -0.173 4.173 14 H 0.129 0.871 15 C 0.064 3.936 16 N -0.502 5.502 17 C 0.041 3.959 18 C 0.448 3.552 19 O -0.605 6.605 20 N -0.590 5.590 21 C -0.328 4.328 22 H 0.056 0.944 23 C -0.014 4.014 24 N -0.933 5.933 25 Si 0.964 3.036 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.234 1.234 29 C 0.056 3.944 30 C -0.139 4.139 31 H 0.154 0.846 32 H 0.049 0.951 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.105 0.895 38 H 0.062 0.938 39 H 0.028 0.972 40 H 0.070 0.930 41 H 0.095 0.905 42 H 0.421 0.579 43 H 0.022 0.978 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.128 0.872 47 H 0.389 0.611 48 H 0.279 0.721 49 H 0.052 0.948 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.422 -21.443 -10.390 34.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.145 4.145 4 C 0.017 3.983 5 H 0.136 0.864 6 O -0.296 6.296 7 C -0.071 4.071 8 C 0.276 3.724 9 O -0.454 6.454 10 N -0.332 5.332 11 C -0.002 4.002 12 H 0.123 0.877 13 C -0.193 4.193 14 H 0.147 0.853 15 C -0.064 4.064 16 N -0.227 5.227 17 C -0.090 4.090 18 C 0.236 3.764 19 O -0.489 6.489 20 N -0.231 5.231 21 C -0.458 4.458 22 H 0.074 0.926 23 C -0.213 4.213 24 N -0.573 5.573 25 Si 0.784 3.216 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.158 1.158 29 C -0.071 4.071 30 C -0.159 4.159 31 H 0.172 0.828 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.081 0.919 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.114 0.886 42 H 0.260 0.740 43 H 0.040 0.960 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.145 0.855 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.070 0.930 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -23.762 -21.471 -10.064 33.570 hybrid contribution 1.195 0.877 -0.644 1.616 sum -22.567 -20.594 -10.708 32.373 Atomic orbital electron populations 1.21773 0.94934 1.02187 1.02142 1.21453 0.96398 0.94854 1.02790 1.21741 0.89001 0.99720 1.04087 1.22329 0.96324 0.88220 0.91418 0.86438 1.87973 1.36933 1.71969 1.32750 1.22994 0.84525 0.96101 1.03530 1.22181 0.79456 0.89866 0.80860 1.90718 1.39245 1.73361 1.42034 1.45176 1.52786 1.11988 1.23203 1.21533 1.00894 0.83312 0.94435 0.87701 1.23919 0.96759 0.99768 0.98902 0.85316 1.22606 0.94560 0.88888 1.00306 1.65418 1.07369 1.00717 1.49187 1.22101 0.93466 0.95822 0.97656 1.20808 0.87106 0.82401 0.86087 1.90496 1.74399 1.44814 1.39213 1.42018 1.20886 1.21713 1.38507 1.19002 0.98542 1.07741 1.20470 0.92551 1.26099 0.95153 0.99865 1.00159 1.69797 1.14466 1.30079 1.42987 0.85380 0.79216 0.78390 0.78636 1.17890 1.20010 1.15769 1.22857 0.95349 0.93823 0.95065 1.23936 0.96598 0.92638 1.02745 0.82846 0.93218 0.92189 0.91688 0.92345 0.90509 0.87640 0.91943 0.95276 0.91152 0.88637 0.74027 0.95989 0.90275 0.90709 0.85460 0.77522 0.91115 0.93001 0.86706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.91 71.98 0.71 -0.28 16 2 C -0.12 -0.89 5.78 30.60 0.18 -0.71 16 3 C -0.11 -1.02 4.89 30.59 0.15 -0.87 16 4 C 0.08 1.09 2.51 29.85 0.07 1.17 16 5 H 0.12 0.93 7.83 -2.39 -0.02 0.91 16 6 O -0.38 -7.30 9.52 -129.99 -1.24 -8.53 16 7 C 0.02 0.37 10.79 113.37 1.22 1.59 16 8 C 0.49 10.23 7.10 87.66 0.62 10.85 16 9 O -0.58 -18.54 16.07 15.97 0.26 -18.29 16 10 N -0.68 -10.64 5.46 -442.54 -2.42 -13.06 16 11 C 0.11 2.24 5.97 44.99 0.27 2.51 16 12 H 0.11 2.89 7.40 -2.39 -0.02 2.87 16 13 C -0.17 -4.15 7.05 -9.90 -0.07 -4.22 16 14 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 15 C 0.06 2.17 5.12 86.45 0.44 2.62 16 16 N -0.50 -15.38 5.34 -886.03 -4.73 -20.11 16 17 C 0.04 1.30 5.55 85.55 0.47 1.78 16 18 C 0.45 20.59 7.50 87.65 0.66 21.24 16 19 O -0.60 -33.41 13.24 -3.07 -0.04 -33.45 16 20 N -0.59 -28.28 5.09 -306.99 -1.56 -29.84 16 21 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 22 H 0.06 3.96 7.39 -2.91 -0.02 3.94 16 23 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 24 N -0.93 -56.68 13.96 21.66 0.30 -56.38 16 25 Si 0.96 39.32 27.74 68.60 1.90 41.23 16 26 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 27 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 28 H -0.23 -8.14 6.52 99.48 0.65 -7.50 16 29 C 0.06 1.17 6.30 86.45 0.54 1.71 16 30 C -0.14 -2.49 7.05 -9.90 -0.07 -2.56 16 31 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.06 0.62 7.96 -2.39 -0.02 0.60 16 36 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.11 0.47 7.75 -2.39 -0.02 0.45 16 38 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.03 0.52 8.11 -2.39 -0.02 0.51 16 40 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.42 3.21 8.52 -92.71 -0.79 2.42 16 43 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 44 H 0.08 3.37 6.04 -2.39 -0.01 3.36 16 45 H 0.08 2.07 7.88 -2.39 -0.02 2.06 16 46 H 0.13 3.26 8.14 -2.38 -0.02 3.24 16 47 H 0.39 15.52 5.76 -92.71 -0.53 14.99 16 48 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 49 H 0.05 1.05 7.82 -2.39 -0.02 1.03 16 50 H 0.11 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -85.89 406.65 -1.43 -87.32 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.43 Total: 35.21 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: 6.53 Total: 15.91 kcal Atomic # 7 Polarization: -110.98 SS G_CDS: -8.40 Total: -119.39 kcal Atomic # 8 Polarization: -59.25 SS G_CDS: -1.02 Total: -60.27 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.90 Total: 41.23 kcal Total: -85.89 -1.43 -87.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114669083.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.110 kcal (2) G-P(sol) polarization free energy of solvation -85.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds