Wall clock time and date at job start Tue Mar 31 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00154 * 2 1 4 4 H 1.08995 * 109.47493 * 9.09055 * 3 2 1 5 5 C 1.50707 * 109.46970 * 129.08873 * 3 2 1 6 6 O 1.21283 * 120.00027 * 4.40542 * 5 3 2 7 7 N 1.34780 * 119.99905 * 184.40396 * 5 3 2 8 8 C 1.46495 * 119.99883 * 175.03024 * 7 5 3 9 9 H 1.09002 * 115.51756 * 9.41864 * 8 7 5 10 10 C 1.53002 * 117.40923 * 224.05453 * 8 7 5 11 11 H 1.08993 * 119.52296 * 4.07438 * 10 8 7 12 12 C 1.54378 * 118.12629 * 160.67484 * 10 8 7 13 13 N 1.48554 * 104.59948 * 87.22893 * 12 10 8 14 14 C 1.46893 * 111.00213 * 200.95613 * 13 12 10 15 15 C 1.50693 * 109.47385 * 305.41673 * 14 13 12 16 16 O 1.21292 * 120.00148 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00474 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00374 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99839 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00108 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99833 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47057 * 60.00424 * 22 20 18 24 24 H 1.48503 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47092 * 300.00204 * 22 20 18 26 26 C 1.48566 * 104.22252 * 320.51630 * 13 12 10 27 27 C 1.53002 * 117.44359 * 154.83644 * 8 7 5 28 28 H 1.08997 * 119.52640 * 354.31506 * 27 8 7 29 29 C 1.52997 * 109.47147 * 249.08704 * 3 2 1 30 30 C 1.53008 * 109.47222 * 305.60124 * 29 3 2 31 31 C 1.53004 * 109.46929 * 65.60103 * 29 3 2 32 32 H 1.08998 * 109.47073 * 65.04972 * 1 2 3 33 33 H 1.09000 * 109.47371 * 185.05471 * 1 2 3 34 34 H 1.09005 * 109.47311 * 305.05671 * 1 2 3 35 35 H 0.96994 * 119.99749 * 355.03277 * 7 5 3 36 36 H 1.08996 * 110.41457 * 328.44385 * 12 10 8 37 37 H 1.09003 * 110.40451 * 206.00890 * 12 10 8 38 38 H 1.09004 * 109.47035 * 65.42116 * 14 13 12 39 39 H 1.09002 * 109.47426 * 185.41609 * 14 13 12 40 40 H 0.97001 * 119.99514 * 0.02562 * 17 15 14 41 41 H 0.97001 * 119.99755 * 179.97438 * 21 20 18 42 42 H 1.08996 * 110.40624 * 280.70635 * 26 13 12 43 43 H 1.08994 * 110.41455 * 158.26038 * 26 13 12 44 44 H 1.09002 * 109.47231 * 185.60493 * 29 3 2 45 45 H 1.09000 * 109.46554 * 64.23214 * 30 29 3 46 46 H 1.08994 * 109.46966 * 184.23153 * 30 29 3 47 47 H 1.08992 * 109.47017 * 304.23507 * 30 29 3 48 48 H 1.09000 * 109.47000 * 174.71318 * 31 29 3 49 49 H 1.08998 * 109.46960 * 294.71100 * 31 29 3 50 50 H 1.08994 * 109.47163 * 54.71399 * 31 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2311 2.0501 0.1624 5 6 3.0330 1.3998 1.1029 6 8 3.3012 0.4209 1.7667 7 7 3.6496 2.5722 1.3514 8 6 4.5620 2.6927 2.4912 9 1 4.8137 1.7579 2.9921 10 6 4.4439 3.9477 3.3584 11 1 3.6559 4.6716 3.1510 12 6 5.0402 3.9075 4.7818 13 7 6.4606 4.3046 4.6040 14 6 7.2796 3.8515 5.7361 15 6 6.6830 4.3600 7.0231 16 8 5.6743 5.0333 6.9996 17 7 7.2695 4.0659 8.2004 18 6 6.7269 4.5290 9.3712 19 1 5.8293 5.1292 9.3501 20 6 7.3313 4.2253 10.5849 21 7 8.4232 3.4946 10.6105 22 14 6.5916 4.8557 12.1802 23 1 5.2099 4.3314 12.3264 24 1 7.4192 4.3971 13.3248 25 1 6.5580 6.3401 12.1576 26 6 6.8730 3.6315 3.3454 27 6 5.6496 3.7660 2.4134 28 1 5.7758 4.3373 1.4938 29 6 2.6880 1.5618 -1.3474 30 6 3.6841 0.4377 -1.6395 31 6 1.6291 1.6044 -2.4510 32 1 -0.3633 0.4335 -0.9317 33 1 -0.3634 -1.0237 0.0905 34 1 -0.3634 0.5903 0.8413 35 1 3.4892 3.3361 0.7757 36 1 4.9757 2.9001 5.1928 37 1 4.5254 4.6170 5.4297 38 1 7.3051 2.7619 5.7530 39 1 8.2935 4.2370 5.6284 40 1 8.0759 3.5271 8.2192 41 1 8.8453 3.2829 11.4578 42 1 7.0953 2.5808 3.5316 43 1 7.7382 4.1330 2.9119 44 1 3.2157 2.5150 -1.3132 45 1 3.1470 -0.5045 -1.7482 46 1 4.2209 0.6586 -2.5620 47 1 4.3939 0.3583 -0.8161 48 1 2.0992 1.8797 -3.3952 49 1 1.1662 0.6224 -2.5484 50 1 0.8677 2.3414 -2.1958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001114779940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:39 Heat of formation + Delta-G solvation = -74.973570 kcal Electronic energy + Delta-G solvation = -29523.158571 eV Core-core repulsion = 25358.830782 eV Total energy + Delta-G solvation = -4164.327789 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.72725 -39.80187 -38.22595 -37.69093 -35.32931 -34.92526 -33.88332 -32.52064 -31.23592 -28.84928 -28.21506 -27.64956 -27.39105 -26.21035 -24.62804 -22.60913 -21.50705 -20.96371 -20.31330 -20.22965 -19.14680 -17.86978 -17.73989 -17.31992 -16.76795 -16.06134 -15.81345 -15.35280 -15.05128 -14.89937 -14.71698 -14.51969 -14.35757 -14.02752 -13.75716 -13.53745 -13.42836 -13.40771 -12.91498 -12.81979 -12.53504 -12.36279 -12.12740 -11.97365 -11.83915 -11.69086 -11.54436 -11.49273 -11.30036 -11.22062 -11.21029 -10.96940 -10.81311 -10.50765 -10.43591 -10.22153 -10.05127 -9.62999 -9.48651 -8.91723 -8.40432 -8.03394 -7.92552 -6.41773 -3.82695 2.27370 2.47887 3.20252 3.26170 3.30358 3.47213 3.62170 3.88821 4.05774 4.18195 4.21082 4.27179 4.41147 4.58942 4.64267 4.67180 4.78354 4.85678 4.93282 4.98640 5.02016 5.12273 5.19808 5.25477 5.26003 5.29924 5.36112 5.38239 5.51068 5.57889 5.61271 5.71342 5.74952 5.78738 5.79061 5.93781 6.00172 6.05260 6.13584 6.26020 6.32144 6.60995 6.63671 7.13556 7.19330 7.25087 7.55035 7.95089 8.05298 8.60972 9.17365 9.53221 10.04699 10.75772 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.001888 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.603421 B =14828.436947 C =15404.986563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.351 6.351 3 C 0.077 3.923 4 H 0.090 0.910 5 C 0.510 3.490 6 O -0.513 6.513 7 N -0.699 5.699 8 C 0.103 3.897 9 H 0.133 0.867 10 C -0.162 4.162 11 H 0.117 0.883 12 C 0.066 3.934 13 N -0.487 5.487 14 C 0.033 3.967 15 C 0.442 3.558 16 O -0.582 6.582 17 N -0.561 5.561 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C 0.059 3.941 27 C -0.168 4.168 28 H 0.118 0.882 29 C -0.104 4.104 30 C -0.144 4.144 31 C -0.148 4.148 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.401 0.599 36 H 0.040 0.960 37 H 0.122 0.878 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.393 0.607 41 H 0.272 0.728 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.066 0.934 46 H 0.056 0.944 47 H 0.055 0.945 48 H 0.062 0.938 49 H 0.062 0.938 50 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.627 -3.818 -26.676 28.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.268 6.268 3 C 0.015 3.985 4 H 0.108 0.892 5 C 0.296 3.704 6 O -0.386 6.386 7 N -0.350 5.350 8 C -0.003 4.003 9 H 0.150 0.850 10 C -0.183 4.183 11 H 0.135 0.865 12 C -0.062 4.062 13 N -0.211 5.211 14 C -0.098 4.098 15 C 0.227 3.773 16 O -0.467 6.467 17 N -0.197 5.197 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.069 4.069 27 C -0.189 4.189 28 H 0.136 0.864 29 C -0.123 4.123 30 C -0.201 4.201 31 C -0.205 4.205 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.063 0.937 35 H 0.235 0.765 36 H 0.058 0.942 37 H 0.140 0.860 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.226 0.774 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.085 0.915 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.830 -3.780 -26.031 28.447 hybrid contribution -0.058 -0.223 0.639 0.679 sum -10.888 -4.003 -25.392 27.917 Atomic orbital electron populations 1.22983 0.80638 1.03403 1.00059 1.88033 1.19642 1.24632 1.94518 1.22091 0.95261 0.87583 0.93516 0.89241 1.20736 0.82080 0.82856 0.84750 1.90743 1.62753 1.35763 1.49388 1.45252 1.46136 1.13403 1.30239 1.21820 0.93227 0.95570 0.89702 0.84951 1.24140 1.00144 1.00092 0.93906 0.86515 1.22852 0.89185 1.00838 0.93277 1.65408 1.02258 1.52715 1.00708 1.22099 0.98389 0.98244 0.91085 1.19679 0.87094 0.86012 0.84479 1.90442 1.26640 1.43004 1.86572 1.41840 1.26125 1.46936 1.04774 1.19651 1.10330 1.30297 0.82670 0.87922 1.25275 0.96062 0.96938 0.99657 1.69605 1.19066 1.37728 1.27781 0.85907 0.78753 0.79172 0.80322 1.19907 1.20974 1.19881 1.22694 0.96224 0.97509 0.90468 1.23805 0.91295 1.03211 1.00545 0.86432 1.21502 0.97343 1.00239 0.93203 1.21733 0.98400 0.98526 1.01418 1.21861 0.98249 1.02319 0.98057 0.93694 0.89125 0.93744 0.76501 0.94193 0.85997 0.93163 0.88961 0.77413 0.91785 0.93625 0.89479 0.89968 0.91474 0.92525 0.92543 0.91932 0.91868 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.57 101.05 1.07 1.24 16 2 O -0.35 -3.52 8.73 -55.10 -0.48 -4.00 16 3 C 0.08 0.64 2.33 -27.88 -0.06 0.57 16 4 H 0.09 0.53 7.59 -51.93 -0.39 0.13 16 5 C 0.51 5.86 6.12 -10.98 -0.07 5.79 16 6 O -0.51 -8.40 16.07 -14.32 -0.23 -8.63 16 7 N -0.70 -6.60 5.48 -53.80 -0.29 -6.90 16 8 C 0.10 1.23 5.99 -67.93 -0.41 0.82 16 9 H 0.13 1.90 7.39 -51.93 -0.38 1.52 16 10 C -0.16 -2.11 7.05 -89.23 -0.63 -2.74 16 11 H 0.12 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.07 1.12 5.11 -2.19 -0.01 1.11 16 13 N -0.49 -8.24 5.33 -231.42 -1.23 -9.47 16 14 C 0.03 0.61 5.55 -4.98 -0.03 0.58 16 15 C 0.44 10.44 7.50 -10.99 -0.08 10.36 16 16 O -0.58 -15.41 13.24 5.55 0.07 -15.34 16 17 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 18 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 21 N -0.90 -24.61 13.05 55.50 0.72 -23.89 16 22 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.06 0.77 6.30 -2.18 -0.01 0.76 16 27 C -0.17 -1.90 7.05 -89.23 -0.63 -2.53 16 28 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 29 C -0.10 -0.65 2.72 -90.62 -0.25 -0.90 16 30 C -0.14 -1.13 8.80 37.16 0.33 -0.80 16 31 C -0.15 -0.70 8.51 37.16 0.32 -0.38 16 32 H 0.04 0.21 7.18 -51.93 -0.37 -0.17 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.04 0.28 8.08 -51.93 -0.42 -0.14 16 35 H 0.40 2.48 8.33 -40.82 -0.34 2.14 16 36 H 0.04 0.72 8.00 -51.93 -0.42 0.30 16 37 H 0.12 2.47 6.05 -51.93 -0.31 2.16 16 38 H 0.05 0.85 7.88 -51.93 -0.41 0.44 16 39 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.39 9.59 7.90 -40.82 -0.32 9.26 16 41 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.05 0.59 7.82 -51.93 -0.41 0.18 16 43 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.08 0.39 7.59 -51.93 -0.39 0.00 16 45 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 46 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.56 7.27 -51.93 -0.38 0.18 16 48 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 49 H 0.06 0.34 7.40 -51.93 -0.38 -0.05 16 50 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 403.58 15.07 6.08 6.08 Total: -1.00 -34.12 403.58 -9.37 -43.49 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -8.22 Total: 10.99 kcal Atomic # 6 Polarization: 6.59 SS G_CDS: -0.71 Total: 5.88 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.86 Total: -54.59 kcal Atomic # 8 Polarization: -27.33 SS G_CDS: -0.64 Total: -27.97 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.12 -9.37 -43.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114779940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.481 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds