Wall clock time and date at job start Tue Mar 31 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42893 * 114.00154 * 2 1 4 4 H 1.08995 * 109.47493 * 9.09055 * 3 2 1 5 5 C 1.50707 * 109.46970 * 129.08873 * 3 2 1 6 6 O 1.21283 * 120.00027 * 4.40542 * 5 3 2 7 7 N 1.34780 * 119.99905 * 184.40396 * 5 3 2 8 8 C 1.46495 * 119.99883 * 175.03024 * 7 5 3 9 9 H 1.09002 * 115.51756 * 9.41864 * 8 7 5 10 10 C 1.53002 * 117.40923 * 224.05453 * 8 7 5 11 11 H 1.08993 * 119.52296 * 4.07438 * 10 8 7 12 12 C 1.54378 * 118.12629 * 160.67484 * 10 8 7 13 13 N 1.48554 * 104.59948 * 87.22893 * 12 10 8 14 14 C 1.46893 * 111.00213 * 200.95613 * 13 12 10 15 15 C 1.50693 * 109.47385 * 305.41673 * 14 13 12 16 16 O 1.21292 * 120.00148 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00474 * 179.97438 * 15 14 13 18 18 C 1.37095 * 120.00374 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99839 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00108 * 179.97438 * 18 17 15 21 21 N 1.31408 * 119.99755 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99833 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47057 * 60.00424 * 22 20 18 24 24 H 1.48503 * 109.47031 * 180.02562 * 22 20 18 25 25 H 1.48491 * 109.47092 * 300.00204 * 22 20 18 26 26 C 1.48566 * 104.22252 * 320.51630 * 13 12 10 27 27 C 1.53002 * 117.44359 * 154.83644 * 8 7 5 28 28 H 1.08997 * 119.52640 * 354.31506 * 27 8 7 29 29 C 1.52997 * 109.47147 * 249.08704 * 3 2 1 30 30 C 1.53008 * 109.47222 * 305.60124 * 29 3 2 31 31 C 1.53004 * 109.46929 * 65.60103 * 29 3 2 32 32 H 1.08998 * 109.47073 * 65.04972 * 1 2 3 33 33 H 1.09000 * 109.47371 * 185.05471 * 1 2 3 34 34 H 1.09005 * 109.47311 * 305.05671 * 1 2 3 35 35 H 0.96994 * 119.99749 * 355.03277 * 7 5 3 36 36 H 1.08996 * 110.41457 * 328.44385 * 12 10 8 37 37 H 1.09003 * 110.40451 * 206.00890 * 12 10 8 38 38 H 1.09004 * 109.47035 * 65.42116 * 14 13 12 39 39 H 1.09002 * 109.47426 * 185.41609 * 14 13 12 40 40 H 0.97001 * 119.99514 * 0.02562 * 17 15 14 41 41 H 0.97001 * 119.99755 * 179.97438 * 21 20 18 42 42 H 1.08996 * 110.40624 * 280.70635 * 26 13 12 43 43 H 1.08994 * 110.41455 * 158.26038 * 26 13 12 44 44 H 1.09002 * 109.47231 * 185.60493 * 29 3 2 45 45 H 1.09000 * 109.46554 * 64.23214 * 30 29 3 46 46 H 1.08994 * 109.46966 * 184.23153 * 30 29 3 47 47 H 1.08992 * 109.47017 * 304.23507 * 30 29 3 48 48 H 1.09000 * 109.47000 * 174.71318 * 31 29 3 49 49 H 1.08998 * 109.46960 * 294.71100 * 31 29 3 50 50 H 1.08994 * 109.47163 * 54.71399 * 31 29 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2311 2.0501 0.1624 5 6 3.0330 1.3998 1.1029 6 8 3.3012 0.4209 1.7667 7 7 3.6496 2.5722 1.3514 8 6 4.5620 2.6927 2.4912 9 1 4.8137 1.7579 2.9921 10 6 4.4439 3.9477 3.3584 11 1 3.6559 4.6716 3.1510 12 6 5.0402 3.9075 4.7818 13 7 6.4606 4.3046 4.6040 14 6 7.2796 3.8515 5.7361 15 6 6.6830 4.3600 7.0231 16 8 5.6743 5.0333 6.9996 17 7 7.2695 4.0659 8.2004 18 6 6.7269 4.5290 9.3712 19 1 5.8293 5.1292 9.3501 20 6 7.3313 4.2253 10.5849 21 7 8.4232 3.4946 10.6105 22 14 6.5916 4.8557 12.1802 23 1 5.2099 4.3314 12.3264 24 1 7.4192 4.3971 13.3248 25 1 6.5580 6.3401 12.1576 26 6 6.8730 3.6315 3.3454 27 6 5.6496 3.7660 2.4134 28 1 5.7758 4.3373 1.4938 29 6 2.6880 1.5618 -1.3474 30 6 3.6841 0.4377 -1.6395 31 6 1.6291 1.6044 -2.4510 32 1 -0.3633 0.4335 -0.9317 33 1 -0.3634 -1.0237 0.0905 34 1 -0.3634 0.5903 0.8413 35 1 3.4892 3.3361 0.7757 36 1 4.9757 2.9001 5.1928 37 1 4.5254 4.6170 5.4297 38 1 7.3051 2.7619 5.7530 39 1 8.2935 4.2370 5.6284 40 1 8.0759 3.5271 8.2192 41 1 8.8453 3.2829 11.4578 42 1 7.0953 2.5808 3.5316 43 1 7.7382 4.1330 2.9119 44 1 3.2157 2.5150 -1.3132 45 1 3.1470 -0.5045 -1.7482 46 1 4.2209 0.6586 -2.5620 47 1 4.3939 0.3583 -0.8161 48 1 2.0992 1.8797 -3.3952 49 1 1.1662 0.6224 -2.5484 50 1 0.8677 2.3414 -2.1958 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001114779940.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:38 Heat of formation + Delta-G solvation = -101.100144 kcal Electronic energy + Delta-G solvation = -29524.291504 eV Core-core repulsion = 25358.830782 eV Total energy + Delta-G solvation = -4165.460722 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.68430 -40.89982 -39.78061 -38.67186 -36.44359 -35.88923 -35.55919 -33.66283 -33.23990 -29.65791 -29.38705 -28.79373 -28.05624 -26.95564 -26.36455 -23.81320 -22.29820 -22.04335 -21.39525 -20.97753 -20.95059 -19.85943 -18.58461 -18.11899 -17.70860 -17.44741 -16.77058 -16.64847 -16.36729 -16.27628 -15.92273 -15.69822 -15.50165 -15.03363 -14.90494 -14.89169 -14.53288 -14.22047 -14.03367 -13.80440 -13.52859 -13.37818 -13.30892 -13.18207 -12.96044 -12.94453 -12.56215 -12.51303 -12.44951 -12.41216 -12.21408 -12.12652 -12.03860 -11.91967 -11.70247 -11.49260 -11.23534 -11.11155 -10.38659 -10.23454 -10.03564 -9.83452 -9.42189 -8.48127 -5.97042 1.38425 1.40233 1.40454 1.51497 1.67218 2.01263 2.27090 2.60929 2.80684 2.92952 3.18414 3.29815 3.49481 3.63734 3.66676 3.69771 3.81470 3.87701 4.09804 4.14942 4.25220 4.25938 4.30869 4.41482 4.46683 4.49677 4.53648 4.54942 4.62123 4.67191 4.77670 4.83394 4.84359 4.94604 4.97170 5.01769 5.10740 5.15629 5.22331 5.37104 5.39334 5.40165 5.43794 5.77715 5.85485 6.03217 6.05386 6.46619 6.58028 7.10434 7.14165 7.52720 8.08219 8.69060 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022136 B = 0.001888 C = 0.001817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.603421 B =14828.436947 C =15404.986563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.383 6.383 3 C 0.080 3.920 4 H 0.119 0.881 5 C 0.506 3.494 6 O -0.572 6.572 7 N -0.680 5.680 8 C 0.106 3.894 9 H 0.103 0.897 10 C -0.169 4.169 11 H 0.133 0.867 12 C 0.066 3.934 13 N -0.500 5.500 14 C 0.044 3.956 15 C 0.438 3.562 16 O -0.614 6.614 17 N -0.572 5.572 18 C -0.334 4.334 19 H 0.080 0.920 20 C -0.014 4.014 21 N -0.920 5.920 22 Si 0.994 3.006 23 H -0.273 1.273 24 H -0.270 1.270 25 H -0.270 1.270 26 C 0.055 3.945 27 C -0.141 4.141 28 H 0.154 0.846 29 C -0.099 4.099 30 C -0.142 4.142 31 C -0.144 4.144 32 H 0.068 0.932 33 H 0.092 0.908 34 H 0.046 0.954 35 H 0.421 0.579 36 H 0.019 0.981 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.116 0.884 40 H 0.396 0.604 41 H 0.278 0.722 42 H 0.047 0.953 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.051 0.949 46 H 0.072 0.928 47 H 0.029 0.971 48 H 0.072 0.928 49 H 0.053 0.947 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.867 -2.620 -29.127 31.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.300 6.300 3 C 0.018 3.982 4 H 0.137 0.863 5 C 0.294 3.706 6 O -0.450 6.450 7 N -0.332 5.332 8 C -0.001 4.001 9 H 0.121 0.879 10 C -0.189 4.189 11 H 0.151 0.849 12 C -0.062 4.062 13 N -0.224 5.224 14 C -0.087 4.087 15 C 0.226 3.774 16 O -0.500 6.500 17 N -0.209 5.209 18 C -0.463 4.463 19 H 0.098 0.902 20 C -0.214 4.214 21 N -0.561 5.561 22 Si 0.818 3.182 23 H -0.198 1.198 24 H -0.195 1.195 25 H -0.196 1.196 26 C -0.073 4.073 27 C -0.161 4.161 28 H 0.172 0.828 29 C -0.118 4.118 30 C -0.199 4.199 31 C -0.201 4.201 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.064 0.936 35 H 0.259 0.741 36 H 0.037 0.963 37 H 0.102 0.898 38 H 0.082 0.918 39 H 0.134 0.866 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.065 0.935 43 H 0.130 0.870 44 H 0.123 0.877 45 H 0.070 0.930 46 H 0.091 0.909 47 H 0.048 0.952 48 H 0.091 0.909 49 H 0.072 0.928 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -11.065 -2.555 -28.530 30.707 hybrid contribution 0.004 -0.629 1.366 1.504 sum -11.060 -3.184 -27.164 29.502 Atomic orbital electron populations 1.23153 0.79128 1.03945 1.01369 1.88002 1.21461 1.25962 1.94612 1.22261 0.95063 0.87790 0.93076 0.86337 1.21514 0.82076 0.82288 0.84760 1.90719 1.64723 1.37845 1.51690 1.45069 1.44984 1.13760 1.29424 1.21502 0.94285 0.94087 0.90212 0.87887 1.23949 1.01799 1.01453 0.91733 0.84877 1.22604 0.89818 0.98308 0.95447 1.65415 1.01839 1.53604 1.01554 1.21995 0.99099 0.98882 0.88741 1.20675 0.86331 0.84694 0.85727 1.90435 1.28025 1.44176 1.87389 1.41917 1.26492 1.47522 1.04954 1.19634 1.10592 1.31688 0.84391 0.90171 1.26075 0.96306 0.96729 1.02291 1.69671 1.19629 1.37947 1.28838 0.84969 0.78064 0.78621 0.76564 1.19785 1.19473 1.19552 1.22849 0.97828 0.97635 0.88949 1.23914 0.89434 1.01987 1.00729 0.82802 1.21552 0.97408 1.00371 0.92458 1.21710 0.98318 0.98788 1.01122 1.21838 0.98103 1.02421 0.97754 0.91306 0.88989 0.93564 0.74065 0.96318 0.89821 0.91770 0.86602 0.77034 0.91274 0.93480 0.86986 0.87697 0.93023 0.90886 0.95164 0.90901 0.92751 0.90972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.57 113.37 1.20 1.44 16 2 O -0.38 -7.45 8.73 -129.98 -1.13 -8.59 16 3 C 0.08 1.17 2.33 29.85 0.07 1.23 16 4 H 0.12 1.02 7.59 -2.39 -0.02 1.00 16 5 C 0.51 11.29 6.12 87.66 0.54 11.83 16 6 O -0.57 -19.44 16.07 15.96 0.26 -19.18 16 7 N -0.68 -11.53 5.48 -442.52 -2.42 -13.96 16 8 C 0.11 2.42 5.99 44.99 0.27 2.69 16 9 H 0.10 3.06 7.39 -2.39 -0.02 3.04 16 10 C -0.17 -4.21 7.05 -9.90 -0.07 -4.28 16 11 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 12 C 0.07 2.33 5.11 86.45 0.44 2.77 16 13 N -0.50 -16.61 5.33 -886.09 -4.73 -21.33 16 14 C 0.04 1.60 5.55 85.56 0.47 2.07 16 15 C 0.44 21.35 7.50 87.65 0.66 22.01 16 16 O -0.61 -33.96 13.24 -3.07 -0.04 -34.00 16 17 N -0.57 -30.02 5.29 -306.98 -1.62 -31.64 16 18 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 19 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 20 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 21 N -0.92 -50.45 13.05 21.66 0.28 -50.16 16 22 Si 0.99 43.54 29.55 68.60 2.03 45.57 16 23 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 26 C 0.05 1.30 6.30 86.45 0.54 1.84 16 27 C -0.14 -2.78 7.05 -9.89 -0.07 -2.85 16 28 H 0.15 2.01 8.14 -2.39 -0.02 1.99 16 29 C -0.10 -0.98 2.72 -10.79 -0.03 -1.01 16 30 C -0.14 -2.09 8.80 71.98 0.63 -1.46 16 31 C -0.14 -0.89 8.51 71.98 0.61 -0.28 16 32 H 0.07 0.47 7.18 -2.39 -0.02 0.45 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.05 0.52 8.08 -2.38 -0.02 0.50 16 35 H 0.42 3.68 8.33 -92.71 -0.77 2.91 16 36 H 0.02 0.71 8.00 -2.39 -0.02 0.69 16 37 H 0.08 3.59 6.05 -2.39 -0.01 3.58 16 38 H 0.06 2.15 7.88 -2.39 -0.02 2.13 16 39 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 40 H 0.40 19.81 7.90 -92.71 -0.73 19.08 16 41 H 0.28 14.29 8.31 -92.71 -0.77 13.51 16 42 H 0.05 1.13 7.82 -2.39 -0.02 1.11 16 43 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.10 0.57 7.59 -2.39 -0.02 0.55 16 45 H 0.05 0.90 7.69 -2.39 -0.02 0.89 16 46 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 47 H 0.03 0.59 7.27 -2.39 -0.02 0.57 16 48 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 49 H 0.05 0.45 7.40 -2.39 -0.02 0.43 16 50 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 Total: -1.00 -78.84 403.58 -1.38 -80.22 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.54 Total: 35.77 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 6.55 Total: 17.30 kcal Atomic # 7 Polarization: -108.60 SS G_CDS: -8.49 Total: -117.09 kcal Atomic # 8 Polarization: -60.85 SS G_CDS: -0.92 Total: -61.77 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -78.84 -1.38 -80.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001114779940.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.879 kcal (2) G-P(sol) polarization free energy of solvation -78.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds