Wall clock time and date at job start Tue Mar 31 2020 22:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47033 * 2 1 4 4 C 1.52993 * 109.47610 * 239.99490 * 2 1 3 5 5 N 1.46502 * 109.46703 * 119.99370 * 2 1 3 6 6 C 1.46769 * 124.34688 * 179.97438 * 5 2 1 7 7 C 1.54485 * 105.47030 * 197.03928 * 6 5 2 8 8 H 1.08997 * 110.96657 * 92.70464 * 7 6 5 9 9 N 1.46500 * 110.96917 * 216.46139 * 7 6 5 10 10 C 1.34771 * 120.00181 * 198.83480 * 9 7 6 11 11 O 1.21345 * 120.00131 * 359.97438 * 10 9 7 12 12 C 1.49450 * 119.99864 * 180.02562 * 10 9 7 13 13 O 1.21353 * 120.00230 * 359.97438 * 12 10 9 14 14 N 1.34781 * 119.99843 * 179.97438 * 12 10 9 15 15 C 1.46504 * 120.00009 * 180.02562 * 14 12 10 16 16 C 1.52996 * 109.47133 * 179.97438 * 15 14 12 17 17 C 1.52994 * 109.47248 * 179.97438 * 16 15 14 18 18 C 1.50703 * 109.47420 * 180.02562 * 17 16 15 19 19 H 1.07998 * 119.99561 * 359.97438 * 18 17 16 20 20 C 1.37878 * 120.00022 * 180.02562 * 18 17 16 21 21 N 1.31512 * 119.99802 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99768 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.47303 * 90.00014 * 22 20 18 24 24 H 1.48498 * 109.46973 * 209.99771 * 22 20 18 25 25 H 1.48498 * 109.47214 * 329.99587 * 22 20 18 26 26 C 1.54627 * 101.76594 * 334.58477 * 7 6 5 27 27 C 1.34417 * 124.35146 * 359.97438 * 5 2 1 28 28 O 1.21279 * 124.94464 * 359.59579 * 27 5 2 29 29 H 1.09002 * 109.47427 * 300.00489 * 1 2 3 30 30 H 1.09000 * 109.46831 * 60.00216 * 1 2 3 31 31 H 1.08997 * 109.47400 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09000 * 109.47135 * 299.99598 * 3 2 1 34 34 H 1.08996 * 109.47671 * 59.99811 * 3 2 1 35 35 H 1.09004 * 109.47287 * 300.00814 * 4 2 1 36 36 H 1.09004 * 109.47128 * 59.99892 * 4 2 1 37 37 H 1.08994 * 109.47550 * 180.02562 * 4 2 1 38 38 H 1.08998 * 110.24703 * 78.04283 * 6 5 2 39 39 H 1.08997 * 110.24528 * 316.03524 * 6 5 2 40 40 H 0.97002 * 119.99758 * 18.83961 * 9 7 6 41 41 H 0.97002 * 120.00082 * 359.97438 * 14 12 10 42 42 H 1.09003 * 109.46692 * 300.00038 * 15 14 12 43 43 H 1.09000 * 109.47154 * 59.99724 * 15 14 12 44 44 H 1.08991 * 109.47124 * 299.99835 * 16 15 14 45 45 H 1.09000 * 109.47279 * 59.99859 * 16 15 14 46 46 H 1.09002 * 109.47661 * 300.00230 * 17 16 15 47 47 H 1.09007 * 109.47116 * 59.99800 * 17 16 15 48 48 H 0.97004 * 119.99983 * 180.02562 * 21 20 18 49 49 H 1.09005 * 110.48027 * 143.47533 * 26 7 6 50 50 H 1.09000 * 110.48552 * 266.11612 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 2.0182 -0.6905 1.1963 6 6 3.4367 -0.8794 1.5224 7 6 3.4692 -1.9977 2.5877 8 1 3.6014 -2.9750 2.1233 9 7 4.5163 -1.7456 3.5808 10 6 4.9662 -2.7519 4.3561 11 8 4.5037 -3.8669 4.2319 12 6 6.0339 -2.4945 5.3696 13 8 6.4962 -1.3794 5.4941 14 7 6.4835 -3.5008 6.1453 15 6 7.5298 -3.2483 7.1392 16 6 7.8544 -4.5475 7.8793 17 6 8.9475 -4.2840 8.9168 18 6 9.2676 -5.5637 9.6454 19 1 8.7435 -6.4739 9.3938 20 6 10.2289 -5.5724 10.6338 21 7 10.8668 -4.4639 10.9404 22 14 10.6252 -7.1586 11.5373 23 1 11.7094 -7.8782 10.8218 24 1 11.0683 -6.8436 12.9192 25 1 9.4131 -8.0148 11.5892 26 6 2.0641 -1.8713 3.2206 27 6 1.2247 -1.2324 2.1362 28 8 0.0122 -1.2128 2.1173 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 -1.7490 -1.2491 36 1 1.6768 -0.2076 -2.1392 37 1 3.1300 -0.7217 -1.2488 38 1 3.8561 0.0409 1.9289 39 1 3.9899 -1.1874 0.6352 40 1 4.8857 -0.8542 3.6804 41 1 6.1138 -4.3921 6.0461 42 1 8.4257 -2.8814 6.6383 43 1 7.1808 -2.5017 7.8525 44 1 6.9584 -4.9139 8.3801 45 1 8.2032 -5.2944 7.1663 46 1 9.8435 -3.9177 8.4157 47 1 8.5990 -3.5368 9.6300 48 1 11.5433 -4.4700 11.6355 49 1 1.6715 -2.8552 3.4774 50 1 2.0991 -1.2314 4.1023 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117306025.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:42 Heat of formation + Delta-G solvation = -113.879809 kcal Electronic energy + Delta-G solvation = -28893.509810 eV Core-core repulsion = 24727.494920 eV Total energy + Delta-G solvation = -4166.014890 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.50339 -40.55180 -38.69154 -37.23312 -36.77615 -35.70335 -33.92945 -33.30703 -31.29441 -30.14425 -28.47602 -27.88682 -27.60325 -27.11390 -24.89659 -22.99018 -22.18751 -21.63626 -20.85656 -20.39521 -19.10919 -18.50363 -17.52139 -16.97051 -16.58312 -16.32211 -16.09272 -15.88361 -15.39298 -15.06751 -14.84571 -14.53206 -14.46334 -14.37303 -14.22632 -14.13078 -13.81366 -13.73081 -13.39367 -12.78715 -12.73141 -12.56396 -12.34007 -12.31738 -12.16935 -11.93588 -11.86925 -11.84833 -11.80447 -11.58105 -11.50965 -10.93433 -10.80095 -10.62767 -10.13351 -9.93964 -9.87751 -9.57356 -9.43594 -9.21951 -9.16380 -9.05798 -8.40243 -6.05051 -4.08155 1.26800 2.02083 2.16348 2.45245 3.08167 3.29582 3.36141 3.38855 3.44214 3.75427 3.90490 4.23917 4.29880 4.34399 4.41678 4.43824 4.44929 4.50063 4.80528 4.93679 5.01605 5.06777 5.19866 5.21723 5.25353 5.31085 5.32044 5.38236 5.44308 5.52406 5.53693 5.64040 5.75304 5.78242 5.86779 6.03073 6.16029 6.18890 6.49605 6.60041 6.63771 6.75201 6.91333 7.26822 7.56821 7.58768 7.70014 7.73980 7.92586 7.94867 8.34180 8.98293 9.56418 11.06148 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.035686 B = 0.001526 C = 0.001501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.423378 B =18349.484972 C =18649.682845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.173 3.827 3 C -0.158 4.158 4 C -0.159 4.159 5 N -0.610 5.610 6 C 0.098 3.902 7 C 0.136 3.864 8 H 0.116 0.884 9 N -0.697 5.697 10 C 0.514 3.486 11 O -0.512 6.512 12 C 0.501 3.499 13 O -0.525 6.525 14 N -0.690 5.690 15 C 0.113 3.887 16 C -0.123 4.123 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.056 0.944 20 C 0.057 3.943 21 N -0.894 5.894 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.171 4.171 27 C 0.524 3.476 28 O -0.521 6.521 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.416 0.584 41 H 0.412 0.588 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.261 0.739 49 H 0.111 0.889 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.928 11.049 -25.608 33.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.090 3.910 3 C -0.216 4.216 4 C -0.217 4.217 5 N -0.346 5.346 6 C -0.026 4.026 7 C 0.031 3.969 8 H 0.134 0.866 9 N -0.352 5.352 10 C 0.295 3.705 11 O -0.386 6.386 12 C 0.280 3.720 13 O -0.402 6.402 14 N -0.341 5.341 15 C -0.008 4.008 16 C -0.161 4.161 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.144 4.144 21 N -0.533 5.533 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.212 4.212 27 C 0.312 3.688 28 O -0.397 6.397 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.254 0.746 41 H 0.248 0.752 42 H 0.090 0.910 43 H 0.090 0.910 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.071 0.929 49 H 0.130 0.870 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -18.452 11.151 -25.545 33.427 hybrid contribution 0.484 -0.783 0.591 1.094 sum -17.968 10.368 -24.954 32.450 Atomic orbital electron populations 1.22109 0.91896 1.03694 1.02187 1.20519 0.95464 0.91578 0.83436 1.22203 1.01571 0.95002 1.02872 1.22203 1.01571 1.01151 0.96795 1.48418 1.06425 1.56861 1.22854 1.22218 0.83079 0.98471 0.98861 1.21809 0.86407 1.00271 0.88452 0.86607 1.45635 1.39320 1.13381 1.36898 1.20400 0.83154 0.84827 0.82139 1.90783 1.57634 1.22431 1.67792 1.19905 0.83596 0.85735 0.82759 1.90774 1.58170 1.22398 1.68839 1.46086 1.39371 1.12355 1.36306 1.21869 0.89006 1.00446 0.89529 1.21930 1.01317 0.93966 0.98892 1.19035 0.92318 0.97429 0.92566 1.21200 1.20741 0.95294 1.18968 0.92559 1.25021 0.96080 0.96283 0.97022 1.69961 1.25257 1.26500 1.31534 0.86570 0.78653 0.83588 0.79049 1.20648 1.21203 1.19865 1.22901 0.94960 1.04470 0.98880 1.20736 0.87474 0.77781 0.82845 1.90749 1.12671 1.59226 1.77073 0.91189 0.92262 0.91205 0.92091 0.91105 0.92024 0.91959 0.91073 0.92086 0.90107 0.89061 0.74644 0.75247 0.91001 0.91013 0.92390 0.92401 0.96188 0.96178 0.92911 0.87034 0.87098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 7.00 37.16 0.26 -0.77 16 2 C 0.17 1.00 1.20 -131.82 -0.16 0.84 16 3 C -0.16 -0.71 8.54 37.16 0.32 -0.39 16 4 C -0.16 -0.70 8.49 37.15 0.32 -0.38 16 5 N -0.61 -3.94 2.76 -157.57 -0.43 -4.38 16 6 C 0.10 0.43 6.32 -3.12 -0.02 0.41 16 7 C 0.14 0.85 3.43 -66.30 -0.23 0.62 16 8 H 0.12 0.78 7.73 -51.93 -0.40 0.38 16 9 N -0.70 -5.24 5.18 -52.66 -0.27 -5.51 16 10 C 0.51 5.62 7.89 -11.59 -0.09 5.53 16 11 O -0.51 -6.58 16.22 5.50 0.09 -6.49 16 12 C 0.50 6.63 7.89 -11.58 -0.09 6.54 16 13 O -0.52 -8.01 16.48 5.49 0.09 -7.92 16 14 N -0.69 -9.47 5.55 -60.73 -0.34 -9.81 16 15 C 0.11 1.84 5.67 -4.04 -0.02 1.81 16 16 C -0.12 -2.30 5.27 -26.74 -0.14 -2.44 16 17 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 19 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 21 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 26 C -0.17 -1.27 6.59 -26.74 -0.18 -1.45 16 27 C 0.52 4.71 7.84 -10.86 -0.09 4.62 16 28 O -0.52 -6.45 13.99 5.56 0.08 -6.38 16 29 H 0.07 0.64 7.06 -51.93 -0.37 0.27 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.63 7.08 -51.93 -0.37 0.26 16 32 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.06 0.22 7.21 -51.93 -0.37 -0.16 16 38 H 0.08 0.27 7.77 -51.93 -0.40 -0.14 16 39 H 0.09 0.28 7.12 -51.93 -0.37 -0.09 16 40 H 0.42 2.62 7.84 -40.82 -0.32 2.30 16 41 H 0.41 5.14 7.94 -40.82 -0.32 4.81 16 42 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.11 0.90 8.14 -51.93 -0.42 0.48 16 50 H 0.11 0.80 8.08 -51.93 -0.42 0.38 16 LS Contribution 409.46 15.07 6.17 6.17 Total: -1.00 -33.29 409.46 -7.94 -41.23 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.37 Total: 0.20 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -0.67 Total: 2.24 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: -0.31 Total: -45.28 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.26 Total: -20.79 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.29 -7.94 -41.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117306025.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.647 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds