Wall clock time and date at job start Tue Mar 31 2020 22:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 C 1.53002 * 109.47111 * 239.99906 * 2 1 3 5 5 O 1.45205 * 109.47015 * 120.00012 * 2 1 3 6 6 C 1.34641 * 116.99797 * 60.00017 * 5 2 1 7 7 O 1.21508 * 120.00241 * 0.02562 * 6 5 2 8 8 N 1.34770 * 119.99607 * 179.97438 * 6 5 2 9 9 C 1.47595 * 125.69455 * 0.02562 * 8 6 5 10 10 C 1.55094 * 104.99888 * 155.98148 * 9 8 6 11 11 H 1.08993 * 111.03590 * 153.97279 * 10 9 8 12 12 N 1.46496 * 111.03513 * 277.90699 * 10 9 8 13 13 C 1.34776 * 119.99878 * 267.04538 * 12 10 9 14 14 O 1.21593 * 119.99781 * 359.97438 * 13 12 10 15 15 N 1.34773 * 120.00411 * 179.97438 * 13 12 10 16 16 C 1.46504 * 120.00326 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47341 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99737 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00221 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46944 * 89.99780 * 21 19 17 23 23 H 1.48497 * 109.47079 * 210.00256 * 21 19 17 24 24 H 1.48504 * 109.46776 * 329.99984 * 21 19 17 25 25 C 1.54175 * 101.42910 * 35.93895 * 10 9 8 26 26 C 1.51930 * 121.73336 * 109.30359 * 25 10 9 27 27 C 1.51915 * 121.75220 * 182.04028 * 25 10 9 28 28 C 1.47295 * 125.64693 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47109 * 300.00273 * 1 2 3 30 30 H 1.09004 * 109.47229 * 59.99577 * 1 2 3 31 31 H 1.09000 * 109.47292 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47015 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46897 * 299.99887 * 3 2 1 34 34 H 1.09003 * 109.46900 * 60.00199 * 3 2 1 35 35 H 1.09000 * 109.47254 * 300.00283 * 4 2 1 36 36 H 1.09004 * 109.46652 * 60.00164 * 4 2 1 37 37 H 1.08992 * 109.47165 * 180.02562 * 4 2 1 38 38 H 1.09002 * 110.31624 * 37.10857 * 9 8 6 39 39 H 1.09004 * 110.44023 * 274.91371 * 9 8 6 40 40 H 0.97003 * 120.00662 * 87.03524 * 12 10 9 41 41 H 0.97003 * 120.00137 * 0.02562 * 15 13 12 42 42 H 1.09005 * 109.47049 * 299.99953 * 16 15 13 43 43 H 1.08992 * 109.46816 * 60.00013 * 16 15 13 44 44 H 0.97002 * 119.99681 * 180.02562 * 20 19 17 45 45 H 1.08998 * 117.52775 * 218.60420 * 26 25 10 46 46 H 1.09002 * 117.52623 * 3.78859 * 26 25 10 47 47 H 1.08997 * 117.52790 * 356.25457 * 27 25 10 48 48 H 1.09007 * 117.52582 * 141.42696 * 27 25 10 49 49 H 1.09002 * 109.97188 * 62.51265 * 28 8 6 50 50 H 1.08997 * 109.96538 * 301.28382 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 2.9186 -2.1407 3.5025 10 6 2.6053 -3.0386 4.7276 11 1 3.4479 -3.0658 5.4185 12 7 1.3855 -2.5948 5.4067 13 6 1.4646 -1.7304 6.4377 14 8 2.5486 -1.3194 6.8046 15 7 0.3424 -1.3216 7.0621 16 6 0.4285 -0.3825 8.1833 17 6 -0.9562 -0.0892 8.7004 18 1 -1.8147 -0.5554 8.2398 19 6 -1.1274 0.7750 9.7609 20 7 -0.0820 1.3431 10.3216 21 14 -2.8439 1.1391 10.4016 22 1 -3.1936 0.1617 11.4634 23 1 -2.8818 2.5137 10.9621 24 1 -3.8209 1.0314 9.2883 25 6 2.3965 -4.4104 4.0556 26 6 3.4004 -5.5396 4.2152 27 6 2.0127 -5.6429 4.8565 28 6 1.7487 -4.0740 2.7071 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 2.6610 -1.1035 3.7172 39 1 3.9719 -2.2209 3.2336 40 1 0.5207 -2.9229 5.1142 41 1 -0.5223 -1.6498 6.7697 42 1 1.0281 -0.8222 8.9804 43 1 0.8947 0.5434 7.8466 44 1 -0.2025 1.9508 11.0679 45 1 3.6003 -6.1628 3.3436 46 1 4.2496 -5.3688 4.8768 47 1 1.9493 -5.5401 5.9398 48 1 1.3000 -6.3342 4.4066 49 1 2.1570 -4.7168 1.9272 50 1 0.6685 -4.2054 2.7699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123645806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:58 Heat of formation + Delta-G solvation = -80.266258 kcal Electronic energy + Delta-G solvation = -30600.492948 eV Core-core repulsion = 26435.935651 eV Total energy + Delta-G solvation = -4164.557297 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06273 -40.04423 -38.62417 -37.06457 -35.37530 -34.26753 -34.02559 -33.50309 -32.25603 -29.13066 -27.96737 -27.57995 -27.53999 -26.89621 -23.76668 -22.74629 -22.46126 -21.74293 -20.20133 -19.72100 -19.46522 -18.12078 -17.80925 -16.94054 -16.57188 -16.27289 -15.89637 -15.30358 -15.02096 -14.96620 -14.68876 -14.56442 -14.41299 -13.98751 -13.92276 -13.54221 -13.15012 -13.03592 -12.79539 -12.65162 -12.37973 -12.22851 -12.05846 -12.02852 -11.97046 -11.81384 -11.76996 -11.60862 -11.43244 -11.20930 -10.95211 -10.89678 -10.73085 -10.51710 -10.41933 -10.30343 -10.15155 -9.44462 -9.37091 -9.08961 -8.75010 -8.64883 -7.78611 -6.15460 -4.21937 1.92256 2.72854 3.06361 3.24810 3.31172 3.33747 3.60192 3.72366 3.83801 4.02372 4.32571 4.38283 4.53057 4.54423 4.58903 4.62340 4.72684 5.04209 5.13932 5.20372 5.20835 5.28438 5.32209 5.36043 5.38062 5.42521 5.45473 5.49700 5.51015 5.60828 5.65892 5.67979 5.72790 5.80915 5.82772 5.87605 6.01340 6.09692 6.16388 6.34675 6.79001 7.09442 7.32229 7.49457 7.54255 7.56582 7.89224 8.03445 8.21955 8.75729 8.91776 9.30636 9.47029 10.94737 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009507 B = 0.003028 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.367154 B = 9243.292789 C =11222.358473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.142 4.142 4 C -0.182 4.182 5 O -0.358 6.358 6 C 0.671 3.329 7 O -0.572 6.572 8 N -0.601 5.601 9 C 0.093 3.907 10 C 0.193 3.807 11 H 0.113 0.887 12 N -0.743 5.743 13 C 0.695 3.305 14 O -0.600 6.600 15 N -0.728 5.728 16 C 0.268 3.732 17 C -0.542 4.542 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.885 5.885 21 Si 0.903 3.097 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.164 4.164 26 C -0.149 4.149 27 C -0.147 4.147 28 C 0.169 3.831 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.393 0.607 41 H 0.386 0.614 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.266 0.734 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.073 0.927 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.186 -10.456 -20.915 23.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.239 4.239 5 O -0.272 6.272 6 C 0.427 3.573 7 O -0.462 6.462 8 N -0.342 5.342 9 C -0.031 4.031 10 C 0.085 3.915 11 H 0.131 0.869 12 N -0.399 5.399 13 C 0.395 3.605 14 O -0.479 6.479 15 N -0.379 5.379 16 C 0.147 3.853 17 C -0.580 4.580 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.166 4.166 26 C -0.186 4.186 27 C -0.184 4.184 28 C 0.047 3.953 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.085 0.915 33 H 0.098 0.902 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.088 0.912 37 H 0.077 0.923 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.226 0.774 41 H 0.218 0.782 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.075 0.925 45 H 0.119 0.881 46 H 0.121 0.879 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.091 0.909 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 5.983 -9.909 -20.747 23.757 hybrid contribution -1.745 0.076 0.063 1.747 sum 4.238 -9.833 -20.684 23.291 Atomic orbital electron populations 1.22519 0.93947 1.04995 1.02636 1.22083 0.94458 0.91580 0.81973 1.21864 1.02244 0.92493 1.03278 1.22508 1.01465 1.03401 0.96520 1.86351 1.71285 1.23269 1.46307 1.17407 0.78529 0.80459 0.80938 1.90886 1.41633 1.70659 1.43043 1.47071 1.53293 1.12270 1.21539 1.22955 0.94580 0.99894 0.85648 1.21063 0.89259 0.89043 0.92122 0.86885 1.44990 1.08611 1.50469 1.35808 1.16130 0.85550 0.79416 0.79432 1.90878 1.27192 1.61330 1.68498 1.45729 1.06082 1.49477 1.36628 1.18979 0.97209 0.86971 0.82160 1.21223 0.92108 1.28052 1.16634 0.91990 1.24937 0.97434 0.95423 0.96201 1.69981 1.29358 1.29552 1.23391 0.86420 0.83717 0.77704 0.79089 1.20483 1.21008 1.19785 1.21826 1.06399 0.91481 0.96876 1.22926 0.93556 0.98848 1.03269 1.22810 0.98266 0.97324 1.00036 1.21087 0.99969 0.79933 0.94303 0.91925 0.91204 0.89472 0.91476 0.90166 0.91201 0.89487 0.91196 0.92258 0.89294 0.90265 0.77423 0.78163 0.95723 0.95732 0.92471 0.88080 0.87875 0.87669 0.88135 0.90896 0.90596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.01 8.37 37.16 0.31 -1.70 16 2 C 0.14 1.50 1.13 -90.62 -0.10 1.39 16 3 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 4 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 5 O -0.36 -4.84 9.42 -40.33 -0.38 -5.22 16 6 C 0.67 9.34 7.93 54.05 0.43 9.77 16 7 O -0.57 -8.64 12.21 -19.28 -0.24 -8.87 16 8 N -0.60 -7.33 3.34 -176.44 -0.59 -7.92 16 9 C 0.09 1.15 6.63 -2.34 -0.02 1.13 16 10 C 0.19 2.34 3.23 -66.21 -0.21 2.12 16 11 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16 12 N -0.74 -10.60 5.20 -57.00 -0.30 -10.89 16 13 C 0.69 13.77 8.57 -86.92 -0.74 13.03 16 14 O -0.60 -14.29 15.98 5.28 0.08 -14.20 16 15 N -0.73 -15.33 5.55 -66.41 -0.37 -15.70 16 16 C 0.27 7.11 5.43 -5.19 -0.03 7.08 16 17 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 18 H 0.06 1.58 7.60 -52.48 -0.40 1.18 16 19 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 20 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 21 Si 0.90 20.88 29.54 -169.99 -5.02 15.86 16 22 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 25 C -0.16 -1.48 1.88 -154.82 -0.29 -1.77 16 26 C -0.15 -1.06 10.31 -27.16 -0.28 -1.34 16 27 C -0.15 -1.13 10.33 -27.17 -0.28 -1.41 16 28 C 0.17 1.67 6.71 -3.43 -0.02 1.64 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.09 1.04 5.88 -51.93 -0.31 0.73 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.09 1.31 8.05 -51.93 -0.42 0.90 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.39 4.85 8.68 -40.82 -0.35 4.50 16 41 H 0.39 7.06 8.34 -40.82 -0.34 6.72 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.67 8.12 -51.93 -0.42 0.25 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 408.84 15.07 6.16 6.16 Total: -1.00 -33.43 408.84 -9.34 -42.77 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.41 Total: 9.16 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: -1.02 Total: 14.19 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.52 Total: -59.84 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -0.53 Total: -28.29 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.43 -9.34 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123645806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.498 kcal (2) G-P(sol) polarization free energy of solvation -33.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds