Wall clock time and date at job start Tue Mar 31 2020 22:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47237 * 2 1 4 4 C 1.53002 * 109.47111 * 239.99906 * 2 1 3 5 5 O 1.45205 * 109.47015 * 120.00012 * 2 1 3 6 6 C 1.34641 * 116.99797 * 60.00017 * 5 2 1 7 7 O 1.21508 * 120.00241 * 0.02562 * 6 5 2 8 8 N 1.34770 * 119.99607 * 179.97438 * 6 5 2 9 9 C 1.47595 * 125.69455 * 0.02562 * 8 6 5 10 10 C 1.55094 * 104.99888 * 155.98148 * 9 8 6 11 11 H 1.08993 * 111.03590 * 153.97279 * 10 9 8 12 12 N 1.46496 * 111.03513 * 277.90699 * 10 9 8 13 13 C 1.34776 * 119.99878 * 267.04538 * 12 10 9 14 14 O 1.21593 * 119.99781 * 359.97438 * 13 12 10 15 15 N 1.34773 * 120.00411 * 179.97438 * 13 12 10 16 16 C 1.46504 * 120.00326 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47341 * 180.02562 * 16 15 13 18 18 H 1.08003 * 119.99737 * 359.97438 * 17 16 15 19 19 C 1.37869 * 120.00221 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00310 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.46944 * 89.99780 * 21 19 17 23 23 H 1.48497 * 109.47079 * 210.00256 * 21 19 17 24 24 H 1.48504 * 109.46776 * 329.99984 * 21 19 17 25 25 C 1.54175 * 101.42910 * 35.93895 * 10 9 8 26 26 C 1.51930 * 121.73336 * 109.30359 * 25 10 9 27 27 C 1.51915 * 121.75220 * 182.04028 * 25 10 9 28 28 C 1.47295 * 125.64693 * 180.02562 * 8 6 5 29 29 H 1.09001 * 109.47109 * 300.00273 * 1 2 3 30 30 H 1.09004 * 109.47229 * 59.99577 * 1 2 3 31 31 H 1.09000 * 109.47292 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47015 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.46897 * 299.99887 * 3 2 1 34 34 H 1.09003 * 109.46900 * 60.00199 * 3 2 1 35 35 H 1.09000 * 109.47254 * 300.00283 * 4 2 1 36 36 H 1.09004 * 109.46652 * 60.00164 * 4 2 1 37 37 H 1.08992 * 109.47165 * 180.02562 * 4 2 1 38 38 H 1.09002 * 110.31624 * 37.10857 * 9 8 6 39 39 H 1.09004 * 110.44023 * 274.91371 * 9 8 6 40 40 H 0.97003 * 120.00662 * 87.03524 * 12 10 9 41 41 H 0.97003 * 120.00137 * 0.02562 * 15 13 12 42 42 H 1.09005 * 109.47049 * 299.99953 * 16 15 13 43 43 H 1.08992 * 109.46816 * 60.00013 * 16 15 13 44 44 H 0.97002 * 119.99681 * 180.02562 * 20 19 17 45 45 H 1.08998 * 117.52775 * 218.60420 * 26 25 10 46 46 H 1.09002 * 117.52623 * 3.78859 * 26 25 10 47 47 H 1.08997 * 117.52790 * 356.25457 * 27 25 10 48 48 H 1.09007 * 117.52582 * 141.42696 * 27 25 10 49 49 H 1.09002 * 109.97188 * 62.51265 * 28 8 6 50 50 H 1.08997 * 109.96538 * 301.28382 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1856 6 6 1.6522 -1.9724 1.3383 7 8 0.9516 -2.5097 0.5036 8 7 2.0680 -2.6657 2.4166 9 6 2.9186 -2.1407 3.5025 10 6 2.6053 -3.0386 4.7276 11 1 3.4479 -3.0658 5.4185 12 7 1.3855 -2.5948 5.4067 13 6 1.4646 -1.7304 6.4377 14 8 2.5486 -1.3194 6.8046 15 7 0.3424 -1.3216 7.0621 16 6 0.4285 -0.3825 8.1833 17 6 -0.9562 -0.0892 8.7004 18 1 -1.8147 -0.5554 8.2398 19 6 -1.1274 0.7750 9.7609 20 7 -0.0820 1.3431 10.3216 21 14 -2.8439 1.1391 10.4016 22 1 -3.1936 0.1617 11.4634 23 1 -2.8818 2.5137 10.9621 24 1 -3.8209 1.0314 9.2883 25 6 2.3965 -4.4104 4.0556 26 6 3.4004 -5.5396 4.2152 27 6 2.0127 -5.6429 4.8565 28 6 1.7487 -4.0740 2.7071 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2493 36 1 1.6766 -0.2074 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 2.6610 -1.1035 3.7172 39 1 3.9719 -2.2209 3.2336 40 1 0.5207 -2.9229 5.1142 41 1 -0.5223 -1.6498 6.7697 42 1 1.0281 -0.8222 8.9804 43 1 0.8947 0.5434 7.8466 44 1 -0.2025 1.9508 11.0679 45 1 3.6003 -6.1628 3.3436 46 1 4.2496 -5.3688 4.8768 47 1 1.9493 -5.5401 5.9398 48 1 1.3000 -6.3342 4.4066 49 1 2.1570 -4.7168 1.9272 50 1 0.6685 -4.2054 2.7699 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123645806.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:57 Heat of formation + Delta-G solvation = -103.531773 kcal Electronic energy + Delta-G solvation = -30601.501817 eV Core-core repulsion = 26435.935651 eV Total energy + Delta-G solvation = -4165.566166 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.06682 -41.20546 -39.99460 -38.01039 -36.31934 -36.11245 -35.12659 -34.77439 -34.21736 -30.42764 -28.84571 -28.74202 -28.37912 -28.31843 -25.18838 -24.10495 -23.33553 -22.77607 -21.77227 -20.73957 -20.40590 -19.66348 -18.85193 -18.11479 -17.92655 -17.52859 -17.32392 -16.66301 -16.43517 -16.05434 -15.88636 -15.75838 -15.39621 -15.21177 -14.93963 -14.76441 -14.48611 -14.27911 -14.02392 -13.76898 -13.75988 -13.37969 -13.20161 -13.12528 -12.90578 -12.90169 -12.87918 -12.71604 -12.51238 -12.35886 -12.31682 -12.22770 -12.05776 -11.49134 -11.47053 -11.41749 -11.37515 -11.14514 -10.97772 -10.79800 -10.37838 -9.87161 -9.56158 -8.28076 -6.44131 1.00645 1.43166 1.45749 1.56479 1.67332 1.78068 2.21728 2.38849 2.74124 2.85214 3.06918 3.20820 3.43479 3.59386 3.61741 3.72633 3.77831 3.92408 3.98978 4.29049 4.32621 4.41122 4.51280 4.58115 4.60176 4.63839 4.69644 4.73173 4.74266 4.82625 4.84394 4.84855 4.95710 5.02898 5.07998 5.09666 5.14703 5.25716 5.28800 5.30292 5.30851 5.42284 5.49265 5.51536 5.67192 5.85989 6.22770 6.30495 6.67425 7.19132 7.24403 7.28655 7.71125 8.84127 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.009507 B = 0.003028 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2944.367154 B = 9243.292789 C =11222.358473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.122 3.878 3 C -0.138 4.138 4 C -0.174 4.174 5 O -0.373 6.373 6 C 0.664 3.336 7 O -0.587 6.587 8 N -0.600 5.600 9 C 0.100 3.900 10 C 0.188 3.812 11 H 0.102 0.898 12 N -0.720 5.720 13 C 0.696 3.304 14 O -0.642 6.642 15 N -0.724 5.724 16 C 0.288 3.712 17 C -0.555 4.555 18 H 0.081 0.919 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.984 3.016 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.258 1.258 25 C -0.166 4.166 26 C -0.132 4.132 27 C -0.141 4.141 28 C 0.168 3.832 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.097 0.903 40 H 0.406 0.594 41 H 0.402 0.598 42 H -0.012 1.012 43 H -0.015 1.015 44 H 0.269 0.731 45 H 0.123 0.877 46 H 0.104 0.896 47 H 0.094 0.906 48 H 0.120 0.880 49 H 0.086 0.914 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.903 -11.809 -22.443 25.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.086 3.914 3 C -0.195 4.195 4 C -0.231 4.231 5 O -0.288 6.288 6 C 0.420 3.580 7 O -0.478 6.478 8 N -0.341 5.341 9 C -0.025 4.025 10 C 0.081 3.919 11 H 0.120 0.880 12 N -0.375 5.375 13 C 0.396 3.604 14 O -0.524 6.524 15 N -0.377 5.377 16 C 0.165 3.835 17 C -0.593 4.593 18 H 0.099 0.901 19 C -0.194 4.194 20 N -0.568 5.568 21 Si 0.807 3.193 22 H -0.195 1.195 23 H -0.209 1.209 24 H -0.182 1.182 25 C -0.167 4.167 26 C -0.169 4.169 27 C -0.178 4.178 28 C 0.048 3.952 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.125 0.875 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.241 0.759 41 H 0.237 0.763 42 H 0.006 0.994 43 H 0.003 0.997 44 H 0.078 0.922 45 H 0.141 0.859 46 H 0.123 0.877 47 H 0.112 0.888 48 H 0.138 0.862 49 H 0.104 0.896 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.681 -11.327 -22.335 25.477 hybrid contribution -1.265 0.479 0.476 1.434 sum 3.416 -10.848 -21.859 24.641 Atomic orbital electron populations 1.22471 0.94076 1.03750 1.03322 1.22451 0.94573 0.92624 0.81730 1.21896 1.02448 0.91091 1.04046 1.22433 1.01602 1.02215 0.96870 1.86360 1.71534 1.23248 1.47625 1.17597 0.78580 0.80638 0.81205 1.90874 1.42336 1.70996 1.43630 1.47189 1.52926 1.13102 1.20884 1.22834 0.95557 0.98196 0.85872 1.21187 0.87748 0.91279 0.91639 0.88024 1.44762 1.10333 1.48508 1.33877 1.16232 0.84369 0.79702 0.80111 1.90847 1.28682 1.62944 1.69957 1.45327 1.07436 1.49089 1.35859 1.18385 0.96615 0.85999 0.82543 1.21589 0.92495 1.28270 1.16938 0.90094 1.26025 1.02129 0.94952 0.96334 1.70138 1.32248 1.30330 1.24074 0.85175 0.77970 0.77423 0.78747 1.19516 1.20915 1.18174 1.21660 1.08755 0.90209 0.96083 1.23071 0.93174 0.96928 1.03747 1.22889 0.99310 0.96247 0.99341 1.21234 1.00215 0.78769 0.95008 0.93005 0.88720 0.91568 0.91180 0.87502 0.92288 0.91612 0.88833 0.91922 0.92239 0.88532 0.75864 0.76274 0.99400 0.99723 0.92233 0.85921 0.87719 0.88780 0.86163 0.89569 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.84 8.37 71.98 0.60 -3.23 16 2 C 0.12 2.62 1.13 -10.79 -0.01 2.61 16 3 C -0.14 -2.28 8.85 71.98 0.64 -1.65 16 4 C -0.17 -3.25 8.37 71.98 0.60 -2.64 16 5 O -0.37 -10.20 9.42 -55.50 -0.52 -10.72 16 6 C 0.66 18.46 7.93 129.79 1.03 19.49 16 7 O -0.59 -17.65 12.21 19.82 0.24 -17.41 16 8 N -0.60 -14.32 3.34 -942.54 -3.15 -17.46 16 9 C 0.10 2.45 6.63 86.89 0.58 3.03 16 10 C 0.19 4.50 3.23 46.11 0.15 4.65 16 11 H 0.10 2.74 7.54 -2.39 -0.02 2.72 16 12 N -0.72 -20.51 5.20 -452.50 -2.35 -22.87 16 13 C 0.70 28.39 8.57 179.06 1.53 29.93 16 14 O -0.64 -32.00 15.98 -4.01 -0.06 -32.06 16 15 N -0.72 -31.25 5.55 -482.29 -2.68 -33.93 16 16 C 0.29 15.96 5.43 85.63 0.46 16.42 16 17 C -0.56 -30.40 9.28 25.60 0.24 -30.16 16 18 H 0.08 4.03 7.60 -2.91 -0.02 4.01 16 19 C 0.01 0.30 5.46 84.65 0.46 0.76 16 20 N -0.93 -56.12 13.29 21.44 0.28 -55.84 16 21 Si 0.98 42.50 29.54 68.60 2.03 44.53 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 25 C -0.17 -2.66 1.88 -52.38 -0.10 -2.76 16 26 C -0.13 -1.50 10.31 30.32 0.31 -1.19 16 27 C -0.14 -1.80 10.33 30.31 0.31 -1.49 16 28 C 0.17 3.03 6.71 86.34 0.58 3.61 16 29 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.07 1.71 5.88 -2.39 -0.01 1.70 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.06 1.54 5.88 -2.39 -0.01 1.52 16 36 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.83 8.05 -2.39 -0.02 1.81 16 39 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.41 9.66 8.68 -92.71 -0.80 8.86 16 41 H 0.40 14.60 8.34 -92.71 -0.77 13.83 16 42 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 43 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 44 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 45 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 47 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 49 H 0.09 1.36 8.12 -2.39 -0.02 1.35 16 50 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -75.83 408.84 0.55 -75.27 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.63 Total: 33.12 kcal Atomic # 6 Polarization: 29.97 SS G_CDS: 7.39 Total: 37.36 kcal Atomic # 7 Polarization: -122.20 SS G_CDS: -7.89 Total: -130.10 kcal Atomic # 8 Polarization: -59.85 SS G_CDS: -0.35 Total: -60.19 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -75.83 0.55 -75.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123645806.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.258 kcal (2) G-P(sol) polarization free energy of solvation -75.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds