Wall clock time and date at job start Tue Mar 31 2020 22:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47107 * 2 1 4 4 C 1.53004 * 109.46846 * 240.00684 * 2 1 3 5 5 O 1.45193 * 109.47440 * 120.00404 * 2 1 3 6 6 C 1.34639 * 117.00204 * 59.99724 * 5 2 1 7 7 O 1.21514 * 119.99577 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00375 * 179.97438 * 6 5 2 9 9 C 1.47110 * 125.58487 * 359.97438 * 8 6 5 10 10 C 1.54549 * 107.37959 * 179.07440 * 9 8 6 11 11 H 1.08998 * 110.75778 * 220.72249 * 10 9 8 12 12 N 1.46498 * 110.91750 * 97.41939 * 10 9 8 13 13 C 1.34778 * 119.99532 * 91.59241 * 12 10 9 14 14 O 1.21591 * 120.00236 * 359.97438 * 13 12 10 15 15 N 1.34784 * 119.99780 * 180.02562 * 13 12 10 16 16 C 1.46497 * 119.99972 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47159 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99851 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99981 * 179.97438 * 17 16 15 20 20 N 1.31523 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47258 * 59.99797 * 21 19 17 23 23 H 1.48502 * 109.47473 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47049 * 300.00285 * 21 19 17 25 25 C 1.53937 * 102.74055 * 339.03411 * 10 9 8 26 26 C 1.51700 * 122.31379 * 250.71817 * 25 10 9 27 27 C 1.51679 * 122.33871 * 177.28341 * 25 10 9 28 28 C 1.47679 * 125.58149 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.47046 * 299.99574 * 1 2 3 30 30 H 1.08999 * 109.47422 * 59.99677 * 1 2 3 31 31 H 1.09001 * 109.46790 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47214 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47731 * 300.00240 * 3 2 1 34 34 H 1.09004 * 109.46820 * 60.00287 * 3 2 1 35 35 H 1.09001 * 109.47111 * 299.99417 * 4 2 1 36 36 H 1.08993 * 109.47787 * 60.00221 * 4 2 1 37 37 H 1.09005 * 109.46961 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.86595 * 59.61764 * 9 8 6 39 39 H 1.09000 * 109.86034 * 298.52146 * 9 8 6 40 40 H 0.96994 * 120.00023 * 271.58883 * 12 10 9 41 41 H 0.96994 * 119.99775 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.47380 * 299.99764 * 16 15 13 43 43 H 1.09004 * 109.47105 * 59.99354 * 16 15 13 44 44 H 0.96996 * 119.99777 * 179.97438 * 20 19 17 45 45 H 1.09002 * 117.53235 * 355.62629 * 26 25 10 46 46 H 1.08996 * 117.53042 * 140.84301 * 26 25 10 47 47 H 1.09005 * 117.53408 * 219.11523 * 27 25 10 48 48 H 1.09002 * 117.53892 * 4.33367 * 27 25 10 49 49 H 1.08998 * 110.39725 * 83.88055 * 28 8 6 50 50 H 1.08997 * 110.40059 * 321.46269 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0682 -2.6658 2.4164 9 6 2.9171 -2.1405 3.4969 10 6 3.1146 -3.2787 4.5236 11 1 3.0580 -2.8944 5.5420 12 7 4.3877 -3.9686 4.3011 13 6 5.4974 -3.5603 4.9480 14 8 5.4420 -2.6191 5.7158 15 7 6.6688 -4.1947 4.7429 16 6 7.8751 -3.7506 5.4456 17 6 9.0390 -4.6195 5.0440 18 1 8.8946 -5.4221 4.3358 19 6 10.2883 -4.3893 5.5798 20 7 10.4642 -3.4117 6.4418 21 14 11.7312 -5.4660 5.0815 22 1 11.9445 -5.3606 3.6158 23 1 12.9540 -5.0159 5.7938 24 1 11.4419 -6.8779 5.4392 25 6 1.9283 -4.2136 4.2265 26 6 0.7557 -4.3630 5.1773 27 6 1.7278 -5.5274 4.9575 28 6 1.7471 -4.0779 2.7061 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7215 -1.2492 38 1 2.4266 -1.2921 3.9741 39 1 3.8822 -1.8338 3.0937 40 1 4.4319 -4.7192 3.6884 41 1 6.7130 -4.9453 4.1302 42 1 8.0876 -2.7141 5.1833 43 1 7.7183 -3.8282 6.5215 44 1 11.3431 -3.2500 6.8190 45 1 0.8088 -3.8352 6.1296 46 1 -0.2393 -4.4479 4.7406 47 1 1.3718 -6.3781 4.3763 48 1 2.4199 -5.7654 5.7653 49 1 2.4356 -4.7396 2.1806 50 1 0.7174 -4.2988 2.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123645809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:02 Heat of formation + Delta-G solvation = -79.873627 kcal Electronic energy + Delta-G solvation = -30326.555532 eV Core-core repulsion = 26162.015260 eV Total energy + Delta-G solvation = -4164.540271 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.09575 -40.08381 -38.64768 -37.08717 -35.39202 -34.30251 -34.05868 -33.56352 -32.27031 -29.13502 -28.01495 -27.62364 -27.59596 -26.89052 -23.77758 -22.76009 -22.47509 -21.73904 -20.21933 -19.80229 -19.47640 -18.15841 -17.84535 -16.87873 -16.59224 -16.28125 -15.90749 -15.39659 -15.15359 -14.91837 -14.78117 -14.53497 -14.49695 -14.00662 -13.86350 -13.48449 -13.33333 -13.05119 -12.70903 -12.56525 -12.48470 -12.30624 -12.11119 -12.07687 -11.96849 -11.81774 -11.78194 -11.64416 -11.49020 -11.17111 -10.97511 -10.88669 -10.72328 -10.56355 -10.48200 -10.31081 -10.19150 -9.46201 -9.39275 -8.97146 -8.83123 -8.70888 -7.80409 -6.15887 -4.22580 1.89158 2.69296 3.06039 3.25492 3.30562 3.32119 3.58784 3.68420 3.84553 4.02382 4.31880 4.37560 4.49316 4.52624 4.54081 4.63945 4.67771 5.03231 5.10585 5.18525 5.20202 5.24036 5.30221 5.30846 5.38851 5.42030 5.43322 5.46375 5.48186 5.55645 5.62609 5.65715 5.72879 5.77172 5.86176 5.88035 5.97049 6.05363 6.11425 6.30824 6.76496 7.07856 7.30114 7.48042 7.52967 7.55705 7.88118 8.02516 8.18539 8.74584 8.90529 9.29227 9.46099 10.94272 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.002567 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.583606 B =10905.866242 C =12356.441910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.135 3.865 3 C -0.141 4.141 4 C -0.183 4.183 5 O -0.358 6.358 6 C 0.670 3.330 7 O -0.573 6.573 8 N -0.600 5.600 9 C 0.096 3.904 10 C 0.195 3.805 11 H 0.112 0.888 12 N -0.745 5.745 13 C 0.694 3.306 14 O -0.599 6.599 15 N -0.727 5.727 16 C 0.268 3.732 17 C -0.543 4.543 18 H 0.062 0.938 19 C 0.064 3.936 20 N -0.886 5.886 21 Si 0.904 3.096 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 C -0.166 4.166 26 C -0.148 4.148 27 C -0.145 4.145 28 C 0.167 3.833 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.393 0.607 41 H 0.387 0.613 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.266 0.734 45 H 0.102 0.898 46 H 0.100 0.900 47 H 0.101 0.899 48 H 0.105 0.895 49 H 0.076 0.924 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.468 1.808 -10.757 24.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.099 3.901 3 C -0.199 4.199 4 C -0.241 4.241 5 O -0.273 6.273 6 C 0.426 3.574 7 O -0.463 6.463 8 N -0.341 5.341 9 C -0.029 4.029 10 C 0.088 3.912 11 H 0.129 0.871 12 N -0.401 5.401 13 C 0.394 3.606 14 O -0.478 6.478 15 N -0.379 5.379 16 C 0.147 3.853 17 C -0.581 4.581 18 H 0.080 0.920 19 C -0.140 4.140 20 N -0.523 5.523 21 Si 0.731 3.269 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.168 4.168 26 C -0.186 4.186 27 C -0.182 4.182 28 C 0.045 3.955 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.226 0.774 41 H 0.219 0.781 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.076 0.924 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.119 0.881 48 H 0.124 0.876 49 H 0.095 0.905 50 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -22.523 2.768 -10.278 24.912 hybrid contribution 0.965 -1.119 -0.908 1.735 sum -21.558 1.648 -11.186 24.343 Atomic orbital electron populations 1.22509 0.94064 1.04940 1.02408 1.22080 0.94284 0.91621 0.82160 1.21862 1.02523 0.92423 1.03049 1.22516 1.01760 1.03383 0.96398 1.86351 1.71333 1.23349 1.46242 1.17438 0.78537 0.80448 0.80987 1.90886 1.41855 1.70684 1.42847 1.47097 1.53052 1.12438 1.21545 1.22685 0.95217 0.97262 0.87696 1.20843 0.81106 0.89826 0.99432 0.87061 1.45076 1.07353 1.37680 1.50027 1.16138 0.80503 0.82943 0.80985 1.90883 1.85128 1.30817 1.40969 1.45732 1.08356 1.35382 1.48441 1.18981 0.78628 0.95591 0.92134 1.21185 0.93338 1.16393 1.27188 0.92022 1.24939 0.98852 0.95434 0.94767 1.69969 1.23775 1.29653 1.28886 0.86475 0.81259 0.80468 0.78688 1.20104 1.21076 1.20094 1.21808 0.99346 1.01956 0.93689 1.22853 0.93934 1.01777 1.00011 1.22742 1.02335 0.90895 1.02248 1.21409 1.01803 0.80095 0.92157 0.92199 0.91203 0.89464 0.91293 0.90167 0.91424 0.89449 0.91189 0.92056 0.90254 0.90172 0.77380 0.78132 0.95721 0.95706 0.92398 0.87938 0.88140 0.88063 0.87634 0.90545 0.89909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.14 1.40 1.13 -90.62 -0.10 1.30 16 3 C -0.14 -1.14 8.85 37.16 0.33 -0.81 16 4 C -0.18 -1.85 8.37 37.16 0.31 -1.54 16 5 O -0.36 -4.65 9.49 -40.32 -0.38 -5.03 16 6 C 0.67 9.08 7.93 54.05 0.43 9.51 16 7 O -0.57 -8.41 12.16 -19.28 -0.23 -8.64 16 8 N -0.60 -7.27 3.34 -176.63 -0.59 -7.86 16 9 C 0.10 1.20 6.66 -2.90 -0.02 1.18 16 10 C 0.20 2.37 3.16 -66.63 -0.21 2.16 16 11 H 0.11 1.51 7.54 -51.93 -0.39 1.12 16 12 N -0.75 -10.29 5.12 -57.40 -0.29 -10.59 16 13 C 0.69 13.55 8.57 -86.91 -0.74 12.80 16 14 O -0.60 -14.18 15.99 5.29 0.08 -14.10 16 15 N -0.73 -15.07 5.55 -66.41 -0.37 -15.43 16 16 C 0.27 7.05 5.43 -5.19 -0.03 7.02 16 17 C -0.54 -14.61 9.28 -34.44 -0.32 -14.93 16 18 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 21 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.17 -1.51 1.87 -154.98 -0.29 -1.80 16 26 C -0.15 -1.13 10.35 -27.25 -0.28 -1.41 16 27 C -0.14 -1.11 10.35 -27.26 -0.28 -1.39 16 28 C 0.17 1.64 6.75 -3.02 -0.02 1.62 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.09 1.01 5.88 -51.93 -0.31 0.70 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.09 1.06 5.88 -51.93 -0.31 0.75 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.08 1.17 8.04 -51.93 -0.42 0.75 16 40 H 0.39 4.50 8.67 -40.82 -0.35 4.15 16 41 H 0.39 6.86 8.34 -40.82 -0.34 6.52 16 42 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 45 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 50 H 0.08 0.79 8.07 -51.93 -0.42 0.37 16 LS Contribution 408.74 15.07 6.16 6.16 Total: -1.00 -33.32 408.74 -9.33 -42.65 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -8.41 Total: 8.39 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: -1.02 Total: 13.96 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.52 Total: -59.13 kcal Atomic # 8 Polarization: -27.24 SS G_CDS: -0.53 Total: -27.77 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.32 -9.33 -42.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123645809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.223 kcal (2) G-P(sol) polarization free energy of solvation -33.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds