Wall clock time and date at job start Tue Mar 31 2020 22:53:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47107 * 2 1 4 4 C 1.53004 * 109.46846 * 240.00684 * 2 1 3 5 5 O 1.45193 * 109.47440 * 120.00404 * 2 1 3 6 6 C 1.34639 * 117.00204 * 59.99724 * 5 2 1 7 7 O 1.21514 * 119.99577 * 0.02562 * 6 5 2 8 8 N 1.34773 * 120.00375 * 179.97438 * 6 5 2 9 9 C 1.47110 * 125.58487 * 359.97438 * 8 6 5 10 10 C 1.54549 * 107.37959 * 179.07440 * 9 8 6 11 11 H 1.08998 * 110.75778 * 220.72249 * 10 9 8 12 12 N 1.46498 * 110.91750 * 97.41939 * 10 9 8 13 13 C 1.34778 * 119.99532 * 91.59241 * 12 10 9 14 14 O 1.21591 * 120.00236 * 359.97438 * 13 12 10 15 15 N 1.34784 * 119.99780 * 180.02562 * 13 12 10 16 16 C 1.46497 * 119.99972 * 179.97438 * 15 13 12 17 17 C 1.50701 * 109.47159 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99851 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99981 * 179.97438 * 17 16 15 20 20 N 1.31523 * 120.00106 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00026 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47258 * 59.99797 * 21 19 17 23 23 H 1.48502 * 109.47473 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47049 * 300.00285 * 21 19 17 25 25 C 1.53937 * 102.74055 * 339.03411 * 10 9 8 26 26 C 1.51700 * 122.31379 * 250.71817 * 25 10 9 27 27 C 1.51679 * 122.33871 * 177.28341 * 25 10 9 28 28 C 1.47679 * 125.58149 * 180.02562 * 8 6 5 29 29 H 1.09004 * 109.47046 * 299.99574 * 1 2 3 30 30 H 1.08999 * 109.47422 * 59.99677 * 1 2 3 31 31 H 1.09001 * 109.46790 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47214 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47731 * 300.00240 * 3 2 1 34 34 H 1.09004 * 109.46820 * 60.00287 * 3 2 1 35 35 H 1.09001 * 109.47111 * 299.99417 * 4 2 1 36 36 H 1.08993 * 109.47787 * 60.00221 * 4 2 1 37 37 H 1.09005 * 109.46961 * 180.02562 * 4 2 1 38 38 H 1.08998 * 109.86595 * 59.61764 * 9 8 6 39 39 H 1.09000 * 109.86034 * 298.52146 * 9 8 6 40 40 H 0.96994 * 120.00023 * 271.58883 * 12 10 9 41 41 H 0.96994 * 119.99775 * 359.97438 * 15 13 12 42 42 H 1.09000 * 109.47380 * 299.99764 * 16 15 13 43 43 H 1.09004 * 109.47105 * 59.99354 * 16 15 13 44 44 H 0.96996 * 119.99777 * 179.97438 * 20 19 17 45 45 H 1.09002 * 117.53235 * 355.62629 * 26 25 10 46 46 H 1.08996 * 117.53042 * 140.84301 * 26 25 10 47 47 H 1.09005 * 117.53408 * 219.11523 * 27 25 10 48 48 H 1.09002 * 117.53892 * 4.33367 * 27 25 10 49 49 H 1.08998 * 110.39725 * 83.88055 * 28 8 6 50 50 H 1.08997 * 110.40059 * 321.46269 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 8 2.0141 -0.6845 1.1854 6 6 1.6523 -1.9724 1.3382 7 8 0.9516 -2.5097 0.5034 8 7 2.0682 -2.6658 2.4164 9 6 2.9171 -2.1405 3.4969 10 6 3.1146 -3.2787 4.5236 11 1 3.0580 -2.8944 5.5420 12 7 4.3877 -3.9686 4.3011 13 6 5.4974 -3.5603 4.9480 14 8 5.4420 -2.6191 5.7158 15 7 6.6688 -4.1947 4.7429 16 6 7.8751 -3.7506 5.4456 17 6 9.0390 -4.6195 5.0440 18 1 8.8946 -5.4221 4.3358 19 6 10.2883 -4.3893 5.5798 20 7 10.4642 -3.4117 6.4418 21 14 11.7312 -5.4660 5.0815 22 1 11.9445 -5.3606 3.6158 23 1 12.9540 -5.0159 5.7938 24 1 11.4419 -6.8779 5.4392 25 6 1.9283 -4.2136 4.2265 26 6 0.7557 -4.3630 5.1773 27 6 1.7278 -5.5274 4.9575 28 6 1.7471 -4.0779 2.7061 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8899 34 1 1.6767 1.9563 0.8901 35 1 1.6767 -1.7488 -1.2494 36 1 1.6767 -0.2073 -2.1393 37 1 3.1300 -0.7215 -1.2492 38 1 2.4266 -1.2921 3.9741 39 1 3.8822 -1.8338 3.0937 40 1 4.4319 -4.7192 3.6884 41 1 6.7130 -4.9453 4.1302 42 1 8.0876 -2.7141 5.1833 43 1 7.7183 -3.8282 6.5215 44 1 11.3431 -3.2500 6.8190 45 1 0.8088 -3.8352 6.1296 46 1 -0.2393 -4.4479 4.7406 47 1 1.3718 -6.3781 4.3763 48 1 2.4199 -5.7654 5.7653 49 1 2.4356 -4.7396 2.1806 50 1 0.7174 -4.2988 2.4252 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123645809.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:01 Heat of formation + Delta-G solvation = -102.965217 kcal Electronic energy + Delta-G solvation = -30327.556858 eV Core-core repulsion = 26162.015260 eV Total energy + Delta-G solvation = -4165.541598 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.08036 -41.22589 -40.00395 -38.00957 -36.32706 -36.11357 -35.16080 -34.78186 -34.21922 -30.43900 -28.88487 -28.72924 -28.37210 -28.31015 -25.17600 -24.12038 -23.36878 -22.73738 -21.77970 -20.79960 -20.39084 -19.70140 -18.86370 -18.06072 -17.87819 -17.53179 -17.32812 -16.64417 -16.45998 -16.04152 -16.01086 -15.71710 -15.51330 -15.22982 -14.95832 -14.64533 -14.46241 -14.35163 -14.00192 -13.90401 -13.49350 -13.36290 -13.31723 -13.10979 -12.91065 -12.89603 -12.88576 -12.67434 -12.50127 -12.39494 -12.32829 -12.22565 -12.02668 -11.50525 -11.48086 -11.41672 -11.40374 -11.14677 -11.01401 -10.77805 -10.32502 -9.87852 -9.61413 -8.26910 -6.42962 0.99578 1.44098 1.48217 1.56008 1.65889 1.78105 2.22317 2.39833 2.70916 2.86133 3.08078 3.21024 3.42666 3.58893 3.63636 3.73256 3.78442 3.93090 3.96480 4.19790 4.30551 4.41545 4.53589 4.57861 4.60723 4.63774 4.69681 4.71208 4.74908 4.82273 4.83110 4.85626 4.95493 5.01539 5.06748 5.11107 5.13578 5.26508 5.28428 5.30075 5.31356 5.42209 5.49966 5.50990 5.68593 5.87060 6.24697 6.29822 6.68620 7.18070 7.25863 7.30803 7.72488 8.85085 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011729 B = 0.002567 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2386.583606 B =10905.866242 C =12356.441910 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.122 3.878 3 C -0.138 4.138 4 C -0.178 4.178 5 O -0.373 6.373 6 C 0.665 3.335 7 O -0.586 6.586 8 N -0.600 5.600 9 C 0.103 3.897 10 C 0.194 3.806 11 H 0.097 0.903 12 N -0.719 5.719 13 C 0.696 3.304 14 O -0.643 6.643 15 N -0.723 5.723 16 C 0.287 3.713 17 C -0.555 4.555 18 H 0.083 0.917 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.983 3.017 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.262 1.262 25 C -0.168 4.168 26 C -0.139 4.139 27 C -0.132 4.132 28 C 0.166 3.834 29 H 0.060 0.940 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.094 0.906 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.056 0.944 40 H 0.409 0.591 41 H 0.404 0.596 42 H -0.015 1.015 43 H -0.012 1.012 44 H 0.269 0.731 45 H 0.102 0.898 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.097 0.903 49 H 0.084 0.916 50 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.481 0.223 -12.367 26.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.086 3.914 3 C -0.195 4.195 4 C -0.236 4.236 5 O -0.288 6.288 6 C 0.420 3.580 7 O -0.478 6.478 8 N -0.341 5.341 9 C -0.022 4.022 10 C 0.087 3.913 11 H 0.115 0.885 12 N -0.376 5.376 13 C 0.396 3.604 14 O -0.525 6.525 15 N -0.376 5.376 16 C 0.164 3.836 17 C -0.593 4.593 18 H 0.101 0.899 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.807 3.193 22 H -0.188 1.188 23 H -0.211 1.211 24 H -0.186 1.186 25 C -0.169 4.169 26 C -0.176 4.176 27 C -0.170 4.170 28 C 0.045 3.955 29 H 0.079 0.921 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.125 0.875 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.113 0.887 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.074 0.926 40 H 0.245 0.755 41 H 0.239 0.761 42 H 0.003 0.997 43 H 0.006 0.994 44 H 0.077 0.923 45 H 0.120 0.880 46 H 0.135 0.865 47 H 0.142 0.858 48 H 0.115 0.885 49 H 0.102 0.898 50 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -23.601 1.133 -11.939 26.474 hybrid contribution 1.179 -0.556 -0.417 1.369 sum -22.422 0.577 -12.356 25.608 Atomic orbital electron populations 1.22443 0.93308 1.03826 1.03667 1.22465 0.95053 0.92515 0.81406 1.21897 1.02098 0.91057 1.04408 1.22467 1.01276 1.02372 0.97444 1.86360 1.71609 1.23215 1.47567 1.17612 0.78545 0.80694 0.81128 1.90877 1.42527 1.71040 1.43315 1.47205 1.52588 1.13275 1.20996 1.22496 0.94243 0.97578 0.87836 1.20896 0.81181 0.90669 0.98532 0.88470 1.44795 1.06360 1.37573 1.48824 1.16235 0.81208 0.82203 0.80763 1.90854 1.85899 1.32761 1.43011 1.45308 1.07474 1.36183 1.48639 1.18388 0.80980 0.93807 0.90451 1.21571 0.93508 1.16738 1.27449 0.89935 1.26032 1.02257 0.96765 0.94448 1.70133 1.24681 1.31734 1.30327 0.85228 0.76782 0.78655 0.78670 1.18843 1.21131 1.18620 1.21656 0.98872 1.02908 0.93513 1.22978 0.94125 1.01180 0.99354 1.22829 1.01751 0.90911 1.01484 1.21567 1.02491 0.78882 0.92526 0.92051 0.88814 0.91651 0.91978 0.87510 0.91346 0.91659 0.88715 0.92706 0.89925 0.92593 0.75463 0.76088 0.99717 0.99436 0.92261 0.87990 0.86455 0.85839 0.88485 0.89818 0.89089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.12 8.37 71.98 0.60 -2.52 16 2 C 0.12 2.43 1.13 -10.79 -0.01 2.42 16 3 C -0.14 -2.04 8.85 71.98 0.64 -1.41 16 4 C -0.18 -3.47 8.37 71.98 0.60 -2.87 16 5 O -0.37 -9.74 9.49 -55.48 -0.53 -10.27 16 6 C 0.66 17.96 7.93 129.79 1.03 18.99 16 7 O -0.59 -17.11 12.16 19.80 0.24 -16.87 16 8 N -0.60 -14.27 3.34 -943.15 -3.15 -17.42 16 9 C 0.10 2.62 6.66 86.79 0.58 3.19 16 10 C 0.19 4.65 3.16 45.83 0.14 4.80 16 11 H 0.10 2.69 7.54 -2.39 -0.02 2.67 16 12 N -0.72 -19.64 5.12 -453.78 -2.32 -21.96 16 13 C 0.70 27.75 8.57 179.05 1.53 29.29 16 14 O -0.64 -31.79 15.99 -4.00 -0.06 -31.86 16 15 N -0.72 -30.40 5.55 -482.28 -2.68 -33.08 16 16 C 0.29 15.72 5.43 85.63 0.46 16.19 16 17 C -0.55 -30.01 9.28 25.60 0.24 -29.77 16 18 H 0.08 4.02 7.60 -2.91 -0.02 4.00 16 19 C 0.00 0.26 5.46 84.65 0.46 0.72 16 20 N -0.93 -55.97 13.29 21.45 0.28 -55.68 16 21 Si 0.98 42.14 29.54 68.60 2.03 44.16 16 22 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 23 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 25 C -0.17 -2.77 1.87 -52.48 -0.10 -2.87 16 26 C -0.14 -1.78 10.35 30.26 0.31 -1.47 16 27 C -0.13 -1.68 10.35 30.25 0.31 -1.36 16 28 C 0.17 2.99 6.75 86.39 0.58 3.57 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.48 5.88 -2.39 -0.01 1.46 16 32 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.06 1.58 5.88 -2.39 -0.01 1.56 16 36 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.06 1.70 8.04 -2.39 -0.02 1.68 16 40 H 0.41 8.76 8.67 -92.71 -0.80 7.96 16 41 H 0.40 14.02 8.34 -92.71 -0.77 13.24 16 42 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 43 H -0.01 -0.76 8.14 -2.38 -0.02 -0.78 16 44 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 47 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 49 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 50 H 0.09 1.54 8.07 -2.39 -0.02 1.52 16 Total: -1.00 -75.40 408.74 0.58 -74.82 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: -0.62 Total: 31.25 kcal Atomic # 6 Polarization: 29.51 SS G_CDS: 7.39 Total: 36.90 kcal Atomic # 7 Polarization: -120.28 SS G_CDS: -7.86 Total: -128.14 kcal Atomic # 8 Polarization: -58.65 SS G_CDS: -0.35 Total: -59.00 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -75.40 0.58 -74.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123645809.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.146 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds