Wall clock time and date at job start Tue Mar 31 2020 23:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00351 * 2 1 4 4 C 1.52995 * 109.47477 * 240.00015 * 3 2 1 5 5 O 1.42903 * 109.46856 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.47390 * 119.99637 * 3 2 1 7 7 C 1.50691 * 109.47199 * 180.02562 * 6 3 2 8 8 O 1.21287 * 120.00060 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00138 * 179.97438 * 7 6 3 10 10 C 1.47747 * 121.65109 * 359.72021 * 9 7 6 11 11 C 1.53609 * 108.47707 * 87.80117 * 10 9 7 12 12 C 1.50704 * 109.49814 * 55.01753 * 11 10 9 13 13 O 1.21284 * 120.23940 * 65.63629 * 12 11 10 14 14 N 1.35506 * 119.52023 * 245.65616 * 12 11 10 15 15 C 1.47111 * 118.10978 * 179.97438 * 14 12 11 16 16 C 1.52985 * 109.17921 * 259.44153 * 15 14 12 17 17 N 1.47778 * 108.81937 * 57.74775 * 16 15 14 18 18 C 1.36938 * 121.64866 * 83.03111 * 17 16 15 19 19 H 1.08003 * 119.99757 * 330.89392 * 18 17 16 20 20 C 1.38812 * 120.00028 * 150.89014 * 18 17 16 21 21 N 1.31614 * 119.99964 * 345.34056 * 20 18 17 22 22 Si 1.86805 * 119.99691 * 165.34428 * 20 18 17 23 23 H 1.48501 * 109.47033 * 90.00152 * 22 20 18 24 24 H 1.48495 * 109.46785 * 209.99906 * 22 20 18 25 25 H 1.48502 * 109.47059 * 329.99687 * 22 20 18 26 26 C 1.47736 * 116.70689 * 263.00773 * 17 16 15 27 27 C 1.47770 * 121.65489 * 179.97438 * 9 7 6 28 28 H 1.08001 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99937 * 179.72492 * 1 2 3 30 30 H 1.08001 * 119.99895 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47255 * 59.99577 * 4 3 2 32 32 H 1.08993 * 109.47735 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.47170 * 299.99919 * 4 3 2 34 34 H 0.96701 * 114.00003 * 60.00165 * 5 3 2 35 35 H 1.09002 * 109.47108 * 300.00667 * 6 3 2 36 36 H 1.09007 * 109.46721 * 60.00409 * 6 3 2 37 37 H 1.09005 * 109.58243 * 207.42775 * 10 9 7 38 38 H 1.08999 * 109.58545 * 327.84279 * 10 9 7 39 39 H 1.09004 * 109.49408 * 294.98257 * 11 10 9 40 40 H 1.09000 * 109.40142 * 175.00355 * 11 10 9 41 41 H 0.97005 * 120.94842 * 359.95170 * 14 12 11 42 42 H 1.09001 * 109.52238 * 139.52899 * 15 14 12 43 43 H 1.09002 * 109.56374 * 19.38159 * 15 14 12 44 44 H 1.08998 * 109.57960 * 297.94748 * 16 15 14 45 45 H 1.08996 * 109.69296 * 177.61173 * 16 15 14 46 46 H 0.96997 * 119.99770 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.58014 * 14.87138 * 26 17 16 48 48 H 1.08998 * 109.58159 * 254.47931 * 26 17 16 49 49 H 1.08998 * 109.58507 * 69.84324 * 27 9 7 50 50 H 1.08996 * 109.58635 * 190.12225 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6914 1.2496 8 8 3.5440 3.4795 0.3403 9 7 4.5380 2.9835 2.2607 10 6 4.7456 2.0537 3.3900 11 6 5.8686 1.0751 3.0148 12 6 7.1009 1.8496 2.6239 13 8 7.6847 2.5240 3.4457 14 7 7.5517 1.7873 1.3476 15 6 8.7569 2.5560 0.9999 16 6 8.3425 3.8469 0.2912 17 7 7.4423 4.6108 1.1799 18 6 7.9288 5.4252 2.1675 19 1 8.8763 5.2006 2.6347 20 6 7.2041 6.5393 2.5682 21 7 6.2116 6.9808 1.8252 22 14 7.6379 7.4120 4.1619 23 1 8.6419 8.4715 3.8886 24 1 6.4150 8.0257 4.7388 25 1 8.2017 6.4323 5.1251 26 6 5.9915 4.4530 0.9500 27 6 5.2950 4.2521 2.2976 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 0.0004 31 1 2.3165 1.3284 -2.1392 32 1 3.4879 2.3302 -1.2494 33 1 3.6515 0.5576 -1.2492 34 1 0.5439 2.4030 0.7659 35 1 2.3164 1.3284 2.1393 36 1 3.6515 0.5576 1.2493 37 1 5.0324 2.6162 4.2785 38 1 3.8247 1.5040 3.5846 39 1 5.5471 0.4565 2.1768 40 1 6.0952 0.4388 3.8703 41 1 7.0931 1.2509 0.6821 42 1 9.3884 1.9636 0.3378 43 1 9.3088 2.7998 1.9077 44 1 7.8218 3.6042 -0.6350 45 1 9.2270 4.4432 0.0674 46 1 5.7050 7.7591 2.1053 47 1 5.8145 3.5840 0.3162 48 1 5.5990 5.3469 0.4653 49 1 4.6111 5.0805 2.4819 50 1 6.0401 4.2099 3.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131357120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:22 Heat of formation + Delta-G solvation = -51.807984 kcal Electronic energy + Delta-G solvation = -33277.236826 eV Core-core repulsion = 29113.913572 eV Total energy + Delta-G solvation = -4163.323254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.16372 -39.06780 -37.74433 -35.82004 -35.29306 -33.74200 -33.03827 -31.45424 -31.20557 -30.36693 -29.36884 -27.92779 -26.23447 -24.47525 -23.64191 -22.91635 -21.72514 -20.17262 -19.76635 -19.70121 -18.50949 -17.23776 -16.83434 -16.50031 -16.16673 -15.91093 -15.47989 -15.15401 -14.79647 -14.57669 -14.41456 -14.13369 -13.56966 -13.33883 -13.21065 -13.16014 -13.05992 -12.68189 -12.47528 -12.36918 -12.27954 -12.05343 -11.73120 -11.60381 -11.46281 -11.34032 -11.17532 -11.08447 -11.02968 -10.74715 -10.44956 -10.21859 -10.16053 -9.94302 -9.75765 -9.65487 -9.59684 -9.13865 -8.92116 -8.68606 -8.25890 -8.00055 -6.45204 -5.54214 -3.07669 2.01288 3.11683 3.25244 3.45701 3.49717 3.53472 3.59384 3.85307 4.23985 4.53535 4.62644 4.72893 4.90127 4.93342 5.02602 5.07161 5.16184 5.30451 5.46871 5.47626 5.55648 5.58590 5.62377 5.66774 5.70394 5.86673 5.90099 6.05116 6.06690 6.15890 6.24116 6.30603 6.44514 6.56013 6.58287 6.64879 6.67588 6.80458 6.97986 7.06479 7.16107 7.55658 7.71270 7.84651 7.99968 8.10164 8.17320 8.52822 8.78198 8.92550 9.35244 9.95825 10.57783 11.44686 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.004420 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.376350 B = 6333.601422 C = 6935.009845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.184 4.184 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.535 6.535 6 C -0.165 4.165 7 C 0.510 3.490 8 O -0.507 6.507 9 N -0.619 5.619 10 C 0.118 3.882 11 C -0.159 4.159 12 C 0.520 3.480 13 O -0.516 6.516 14 N -0.722 5.722 15 C 0.089 3.911 16 C 0.126 3.874 17 N -0.587 5.587 18 C -0.225 4.225 19 H 0.061 0.939 20 C 0.002 3.998 21 N -0.898 5.898 22 Si 0.890 3.110 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.175 3.825 27 C 0.115 3.885 28 H 0.105 0.895 29 H 0.097 0.903 30 H 0.114 0.886 31 H 0.056 0.944 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.366 0.634 35 H 0.088 0.912 36 H 0.094 0.906 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.098 0.902 41 H 0.390 0.610 42 H 0.052 0.948 43 H 0.085 0.915 44 H 0.038 0.962 45 H 0.051 0.949 46 H 0.250 0.750 47 H 0.026 0.974 48 H 0.062 0.938 49 H 0.055 0.945 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.484 -18.614 -1.188 20.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.202 4.202 3 C 0.136 3.864 4 C -0.203 4.203 5 O -0.340 6.340 6 C -0.206 4.206 7 C 0.297 3.703 8 O -0.382 6.382 9 N -0.354 5.354 10 C -0.007 4.007 11 C -0.201 4.201 12 C 0.305 3.695 13 O -0.390 6.390 14 N -0.373 5.373 15 C -0.038 4.038 16 C -0.002 4.002 17 N -0.310 5.310 18 C -0.355 4.355 19 H 0.079 0.921 20 C -0.197 4.197 21 N -0.542 5.542 22 Si 0.721 3.279 23 H -0.216 1.216 24 H -0.218 1.218 25 H -0.204 1.204 26 C 0.050 3.950 27 C -0.006 4.006 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.212 0.788 35 H 0.106 0.894 36 H 0.112 0.888 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.116 0.884 41 H 0.222 0.778 42 H 0.070 0.930 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.044 0.956 48 H 0.080 0.920 49 H 0.074 0.926 50 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.938 -17.349 -1.626 18.755 hybrid contribution -0.430 -0.172 1.293 1.374 sum -7.368 -17.520 -0.333 19.010 Atomic orbital electron populations 1.23849 0.96087 1.02261 1.00026 1.23667 0.96740 0.98947 1.00844 1.19853 0.88002 0.83742 0.94817 1.21932 0.98781 1.04570 0.95061 1.86760 1.50005 1.48896 1.48303 1.22457 1.00283 0.97841 0.99983 1.20082 0.79737 0.88069 0.82409 1.90718 1.63407 1.49532 1.34514 1.49193 1.43730 1.21014 1.21480 1.21790 0.96434 0.91662 0.90808 1.22311 0.95736 0.99067 1.02956 1.20254 0.85095 0.81456 0.82685 1.90751 1.58173 1.39880 1.50242 1.46005 1.30620 1.50084 1.10636 1.22298 0.86372 0.93912 1.01185 1.21438 0.95044 0.91569 0.92118 1.44505 1.00196 1.50127 1.36146 1.18850 1.05476 1.01184 1.10016 0.92080 1.25017 0.99473 0.96417 0.98762 1.70031 1.23123 1.24732 1.36356 0.86461 0.77267 0.79677 0.84533 1.21636 1.21848 1.20416 1.21155 0.82856 0.98032 0.92962 1.22613 0.94193 0.80969 1.02802 0.87716 0.88437 0.86831 0.92492 0.88268 0.92172 0.78750 0.89370 0.88763 0.89305 0.90491 0.90880 0.88351 0.77775 0.92970 0.89676 0.94332 0.93085 0.93965 0.95553 0.91998 0.92649 0.88085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.53 13.93 29.02 0.40 -1.13 16 2 C -0.18 -1.64 8.77 -36.03 -0.32 -1.96 16 3 C 0.18 2.05 0.94 -91.77 -0.09 1.96 16 4 C -0.15 -1.88 8.50 37.16 0.32 -1.56 16 5 O -0.54 -7.27 10.84 -53.51 -0.58 -7.85 16 6 C -0.17 -1.82 3.61 -27.89 -0.10 -1.92 16 7 C 0.51 8.29 6.61 -10.99 -0.07 8.21 16 8 O -0.51 -10.41 11.33 -12.73 -0.14 -10.56 16 9 N -0.62 -10.47 2.42 -171.27 -0.41 -10.89 16 10 C 0.12 1.53 5.55 -3.04 -0.02 1.52 16 11 C -0.16 -1.89 6.20 -27.56 -0.17 -2.06 16 12 C 0.52 8.70 4.75 -10.65 -0.05 8.65 16 13 O -0.52 -11.14 15.08 5.55 0.08 -11.05 16 14 N -0.72 -11.01 4.70 -59.69 -0.28 -11.29 16 15 C 0.09 1.50 6.57 -3.72 -0.02 1.47 16 16 C 0.13 2.54 6.09 -3.35 -0.02 2.51 16 17 N -0.59 -14.28 2.27 -171.20 -0.39 -14.67 16 18 C -0.23 -6.14 8.37 -15.06 -0.13 -6.27 16 19 H 0.06 1.73 7.87 -52.48 -0.41 1.31 16 20 C 0.00 0.05 4.33 -17.43 -0.08 -0.03 16 21 N -0.90 -26.27 10.35 55.49 0.57 -25.70 16 22 Si 0.89 22.50 29.58 -169.99 -5.03 17.47 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 25 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 26 C 0.18 4.21 3.62 -3.35 -0.01 4.20 16 27 C 0.11 2.60 3.86 -3.34 -0.01 2.58 16 28 H 0.10 0.88 6.41 -52.49 -0.34 0.55 16 29 H 0.10 0.65 8.06 -52.49 -0.42 0.23 16 30 H 0.11 0.84 8.06 -52.49 -0.42 0.41 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.10 1.64 5.51 -51.93 -0.29 1.35 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.37 3.70 8.05 45.56 0.37 4.07 16 35 H 0.09 0.81 7.51 -51.93 -0.39 0.42 16 36 H 0.09 0.83 7.06 -51.93 -0.37 0.46 16 37 H 0.09 1.30 7.81 -51.93 -0.41 0.90 16 38 H 0.08 0.72 6.77 -51.93 -0.35 0.37 16 39 H 0.07 0.68 6.85 -51.93 -0.36 0.32 16 40 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.39 4.87 8.71 -40.82 -0.36 4.52 16 42 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 1.69 7.01 -51.93 -0.36 1.32 16 44 H 0.04 0.73 7.76 -51.93 -0.40 0.33 16 45 H 0.05 1.04 8.13 -51.93 -0.42 0.61 16 46 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 47 H 0.03 0.60 5.90 -51.93 -0.31 0.29 16 48 H 0.06 1.80 6.73 -51.93 -0.35 1.45 16 49 H 0.06 1.43 7.73 -51.93 -0.40 1.03 16 50 H 0.10 2.53 4.66 -51.93 -0.24 2.29 16 LS Contribution 377.06 15.07 5.68 5.68 Total: -1.00 -34.90 377.06 -7.91 -42.82 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -7.05 Total: 9.85 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: -0.37 Total: 16.19 kcal Atomic # 7 Polarization: -62.04 SS G_CDS: -0.51 Total: -62.55 kcal Atomic # 8 Polarization: -28.82 SS G_CDS: -0.64 Total: -29.46 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.03 Total: 17.47 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.90 -7.91 -42.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131357120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.989 kcal (2) G-P(sol) polarization free energy of solvation -34.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds