Wall clock time and date at job start Tue Mar 31 2020 23:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 120.00351 * 2 1 4 4 C 1.52995 * 109.47477 * 240.00015 * 3 2 1 5 5 O 1.42903 * 109.46856 * 0.02562 * 3 2 1 6 6 C 1.53004 * 109.47390 * 119.99637 * 3 2 1 7 7 C 1.50691 * 109.47199 * 180.02562 * 6 3 2 8 8 O 1.21287 * 120.00060 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00138 * 179.97438 * 7 6 3 10 10 C 1.47747 * 121.65109 * 359.72021 * 9 7 6 11 11 C 1.53609 * 108.47707 * 87.80117 * 10 9 7 12 12 C 1.50704 * 109.49814 * 55.01753 * 11 10 9 13 13 O 1.21284 * 120.23940 * 65.63629 * 12 11 10 14 14 N 1.35506 * 119.52023 * 245.65616 * 12 11 10 15 15 C 1.47111 * 118.10978 * 179.97438 * 14 12 11 16 16 C 1.52985 * 109.17921 * 259.44153 * 15 14 12 17 17 N 1.47778 * 108.81937 * 57.74775 * 16 15 14 18 18 C 1.36938 * 121.64866 * 83.03111 * 17 16 15 19 19 H 1.08003 * 119.99757 * 330.89392 * 18 17 16 20 20 C 1.38812 * 120.00028 * 150.89014 * 18 17 16 21 21 N 1.31614 * 119.99964 * 345.34056 * 20 18 17 22 22 Si 1.86805 * 119.99691 * 165.34428 * 20 18 17 23 23 H 1.48501 * 109.47033 * 90.00152 * 22 20 18 24 24 H 1.48495 * 109.46785 * 209.99906 * 22 20 18 25 25 H 1.48502 * 109.47059 * 329.99687 * 22 20 18 26 26 C 1.47736 * 116.70689 * 263.00773 * 17 16 15 27 27 C 1.47770 * 121.65489 * 179.97438 * 9 7 6 28 28 H 1.08001 * 119.99895 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99937 * 179.72492 * 1 2 3 30 30 H 1.08001 * 119.99895 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47255 * 59.99577 * 4 3 2 32 32 H 1.08993 * 109.47735 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.47170 * 299.99919 * 4 3 2 34 34 H 0.96701 * 114.00003 * 60.00165 * 5 3 2 35 35 H 1.09002 * 109.47108 * 300.00667 * 6 3 2 36 36 H 1.09007 * 109.46721 * 60.00409 * 6 3 2 37 37 H 1.09005 * 109.58243 * 207.42775 * 10 9 7 38 38 H 1.08999 * 109.58545 * 327.84279 * 10 9 7 39 39 H 1.09004 * 109.49408 * 294.98257 * 11 10 9 40 40 H 1.09000 * 109.40142 * 175.00355 * 11 10 9 41 41 H 0.97005 * 120.94842 * 359.95170 * 14 12 11 42 42 H 1.09001 * 109.52238 * 139.52899 * 15 14 12 43 43 H 1.09002 * 109.56374 * 19.38159 * 15 14 12 44 44 H 1.08998 * 109.57960 * 297.94748 * 16 15 14 45 45 H 1.08996 * 109.69296 * 177.61173 * 16 15 14 46 46 H 0.96997 * 119.99770 * 179.97438 * 21 20 18 47 47 H 1.09006 * 109.58014 * 14.87138 * 26 17 16 48 48 H 1.08998 * 109.58159 * 254.47931 * 26 17 16 49 49 H 1.08998 * 109.58507 * 69.84324 * 27 9 7 50 50 H 1.08996 * 109.58635 * 190.12225 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6914 1.2496 8 8 3.5440 3.4795 0.3403 9 7 4.5380 2.9835 2.2607 10 6 4.7456 2.0537 3.3900 11 6 5.8686 1.0751 3.0148 12 6 7.1009 1.8496 2.6239 13 8 7.6847 2.5240 3.4457 14 7 7.5517 1.7873 1.3476 15 6 8.7569 2.5560 0.9999 16 6 8.3425 3.8469 0.2912 17 7 7.4423 4.6108 1.1799 18 6 7.9288 5.4252 2.1675 19 1 8.8763 5.2006 2.6347 20 6 7.2041 6.5393 2.5682 21 7 6.2116 6.9808 1.8252 22 14 7.6379 7.4120 4.1619 23 1 8.6419 8.4715 3.8886 24 1 6.4150 8.0257 4.7388 25 1 8.2017 6.4323 5.1251 26 6 5.9915 4.4530 0.9500 27 6 5.2950 4.2521 2.2976 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0045 30 1 1.8500 -0.9353 0.0004 31 1 2.3165 1.3284 -2.1392 32 1 3.4879 2.3302 -1.2494 33 1 3.6515 0.5576 -1.2492 34 1 0.5439 2.4030 0.7659 35 1 2.3164 1.3284 2.1393 36 1 3.6515 0.5576 1.2493 37 1 5.0324 2.6162 4.2785 38 1 3.8247 1.5040 3.5846 39 1 5.5471 0.4565 2.1768 40 1 6.0952 0.4388 3.8703 41 1 7.0931 1.2509 0.6821 42 1 9.3884 1.9636 0.3378 43 1 9.3088 2.7998 1.9077 44 1 7.8218 3.6042 -0.6350 45 1 9.2270 4.4432 0.0674 46 1 5.7050 7.7591 2.1053 47 1 5.8145 3.5840 0.3162 48 1 5.5990 5.3469 0.4653 49 1 4.6111 5.0805 2.4819 50 1 6.0401 4.2099 3.0920 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131357120.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:11:20 Heat of formation + Delta-G solvation = -78.896786 kcal Electronic energy + Delta-G solvation = -33278.411485 eV Core-core repulsion = 29113.913572 eV Total energy + Delta-G solvation = -4164.497912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.41373 -40.30341 -38.85249 -37.60408 -36.62883 -35.28901 -33.89322 -33.19662 -32.28140 -31.70518 -30.84326 -29.14830 -27.95057 -26.09694 -25.00811 -24.10304 -22.97020 -21.98444 -21.12871 -20.48403 -19.75622 -18.58132 -18.20244 -17.85770 -17.53645 -17.12054 -16.73771 -16.52726 -16.25016 -15.96240 -15.72246 -15.42307 -15.19456 -15.02263 -14.58724 -14.50558 -14.21453 -14.14645 -13.65084 -13.62298 -13.21319 -13.13432 -13.10701 -13.04484 -12.89806 -12.73891 -12.57315 -12.37479 -12.30676 -12.26362 -11.98655 -11.86393 -11.83780 -11.74639 -11.57302 -11.02443 -10.68862 -10.48547 -10.32090 -10.19379 -9.83851 -9.47723 -8.50004 -7.68996 -5.24900 1.39277 1.39781 1.41951 1.52299 1.89078 1.99060 2.19794 2.53119 2.67892 3.36776 3.40821 3.62931 3.71979 3.85884 3.96897 4.07032 4.13369 4.20608 4.37999 4.44089 4.49518 4.56757 4.59848 4.64843 4.70892 4.76728 4.78768 4.82896 4.87609 4.90086 4.95580 5.01482 5.06169 5.08880 5.22755 5.26774 5.32344 5.50382 5.69435 5.73745 5.80017 5.83642 5.89406 5.92091 6.40182 6.76893 6.91367 6.94900 7.21651 7.50590 7.69999 7.90579 8.47789 9.25604 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014193 B = 0.004420 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.376350 B = 6333.601422 C = 6935.009845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.183 4.183 3 C 0.172 3.828 4 C -0.147 4.147 5 O -0.566 6.566 6 C -0.151 4.151 7 C 0.505 3.495 8 O -0.558 6.558 9 N -0.621 5.621 10 C 0.113 3.887 11 C -0.148 4.148 12 C 0.507 3.493 13 O -0.573 6.573 14 N -0.714 5.714 15 C 0.103 3.897 16 C 0.120 3.880 17 N -0.599 5.599 18 C -0.215 4.215 19 H 0.049 0.951 20 C -0.044 4.044 21 N -0.925 5.925 22 Si 0.942 3.058 23 H -0.285 1.285 24 H -0.296 1.296 25 H -0.280 1.280 26 C 0.200 3.800 27 C 0.143 3.857 28 H 0.095 0.905 29 H 0.117 0.883 30 H 0.140 0.860 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.378 0.622 35 H 0.118 0.882 36 H 0.133 0.867 37 H 0.065 0.935 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.128 0.872 41 H 0.408 0.592 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.044 0.956 46 H 0.241 0.759 47 H 0.040 0.960 48 H 0.003 0.997 49 H 0.007 0.993 50 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.329 -23.412 -0.789 24.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.201 4.201 3 C 0.132 3.868 4 C -0.204 4.204 5 O -0.373 6.373 6 C -0.190 4.190 7 C 0.295 3.705 8 O -0.435 6.435 9 N -0.355 5.355 10 C -0.010 4.010 11 C -0.189 4.189 12 C 0.295 3.705 13 O -0.451 6.451 14 N -0.366 5.366 15 C -0.024 4.024 16 C -0.007 4.007 17 N -0.323 5.323 18 C -0.346 4.346 19 H 0.067 0.933 20 C -0.239 4.239 21 N -0.572 5.572 22 Si 0.772 3.228 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.205 1.205 26 C 0.074 3.926 27 C 0.020 3.980 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.158 0.842 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.108 0.892 34 H 0.226 0.774 35 H 0.136 0.864 36 H 0.151 0.849 37 H 0.084 0.916 38 H 0.148 0.852 39 H 0.131 0.869 40 H 0.146 0.854 41 H 0.244 0.756 42 H 0.116 0.884 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.021 0.979 49 H 0.026 0.974 50 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.785 -22.230 -1.241 23.587 hybrid contribution -0.163 1.301 1.074 1.695 sum -7.948 -20.930 -0.167 22.389 Atomic orbital electron populations 1.24010 0.96162 1.02815 0.98930 1.23567 0.96715 0.98101 1.01728 1.19959 0.87930 0.84687 0.94271 1.21913 0.99217 1.03413 0.95890 1.86736 1.50823 1.50400 1.49376 1.22480 1.00564 0.94963 1.01032 1.21136 0.78897 0.89545 0.80916 1.90731 1.64691 1.51667 1.36444 1.49135 1.43464 1.19654 1.23285 1.22090 0.99366 0.91172 0.88339 1.22337 0.92347 0.98515 1.05705 1.21253 0.85985 0.80941 0.82317 1.90735 1.60097 1.42451 1.51805 1.45974 1.30144 1.49502 1.11018 1.21964 0.87362 0.93038 1.00061 1.21675 0.94114 0.92631 0.92288 1.44655 1.00915 1.50436 1.36248 1.18862 1.04653 1.00917 1.10184 0.93332 1.25535 0.99857 0.97455 1.01098 1.70210 1.24294 1.25102 1.37637 0.85646 0.76728 0.78675 0.81797 1.21214 1.22208 1.20512 1.20706 0.82722 0.95670 0.93486 1.21795 0.92758 0.82823 1.00667 0.88651 0.86481 0.84207 0.93251 0.92501 0.89205 0.77408 0.86368 0.84868 0.91624 0.85181 0.86857 0.85352 0.75648 0.88426 0.92765 0.93153 0.93788 0.94923 0.94215 0.97937 0.97407 0.90511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 13.93 67.78 0.94 -1.37 16 2 C -0.18 -2.41 8.77 25.65 0.22 -2.19 16 3 C 0.17 3.45 0.94 -11.54 -0.01 3.44 16 4 C -0.15 -3.50 8.50 71.98 0.61 -2.89 16 5 O -0.57 -14.81 10.84 -131.50 -1.43 -16.24 16 6 C -0.15 -2.61 3.61 29.85 0.11 -2.50 16 7 C 0.51 15.61 6.61 87.65 0.58 16.19 16 8 O -0.56 -23.46 11.33 14.43 0.16 -23.29 16 9 N -0.62 -20.35 2.42 -814.16 -1.97 -22.32 16 10 C 0.11 2.56 5.55 86.35 0.48 3.04 16 11 C -0.15 -2.82 6.20 30.05 0.19 -2.63 16 12 C 0.51 15.94 4.75 87.54 0.42 16.35 16 13 O -0.57 -24.69 15.08 -3.04 -0.05 -24.74 16 14 N -0.71 -19.98 4.70 -460.74 -2.16 -22.14 16 15 C 0.10 3.31 6.57 86.26 0.57 3.88 16 16 C 0.12 4.81 6.09 86.13 0.52 5.33 16 17 N -0.60 -30.23 2.27 -695.55 -1.58 -31.80 16 18 C -0.22 -12.24 8.37 84.03 0.70 -11.53 16 19 H 0.05 2.86 7.87 -2.91 -0.02 2.84 16 20 C -0.04 -2.59 4.33 84.86 0.37 -2.22 16 21 N -0.93 -57.57 10.35 21.65 0.22 -57.34 16 22 Si 0.94 48.32 29.58 68.60 2.03 50.35 16 23 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 24 H -0.30 -15.19 7.11 99.48 0.71 -14.49 16 25 H -0.28 -14.24 7.11 99.48 0.71 -13.53 16 26 C 0.20 10.06 3.62 86.15 0.31 10.37 16 27 C 0.14 6.75 3.86 86.14 0.33 7.09 16 28 H 0.10 1.38 6.41 -2.91 -0.02 1.36 16 29 H 0.12 1.05 8.06 -2.91 -0.02 1.02 16 30 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.88 5.51 -2.39 -0.01 1.87 16 33 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.38 7.13 8.05 -74.06 -0.60 6.53 16 35 H 0.12 1.44 7.51 -2.39 -0.02 1.42 16 36 H 0.13 1.33 7.06 -2.38 -0.02 1.32 16 37 H 0.07 1.83 7.81 -2.38 -0.02 1.81 16 38 H 0.13 1.63 6.77 -2.39 -0.02 1.62 16 39 H 0.11 1.27 6.85 -2.39 -0.02 1.25 16 40 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.41 8.51 8.71 -92.70 -0.81 7.70 16 42 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 43 H 0.05 2.14 7.01 -2.39 -0.02 2.12 16 44 H 0.05 1.89 7.76 -2.39 -0.02 1.87 16 45 H 0.04 1.81 8.13 -2.39 -0.02 1.79 16 46 H 0.24 14.90 8.31 -92.71 -0.77 14.12 16 47 H 0.04 1.85 5.90 -2.38 -0.01 1.83 16 48 H 0.00 0.17 6.73 -2.39 -0.02 0.15 16 49 H 0.01 0.42 7.73 -2.39 -0.02 0.40 16 50 H 0.08 4.02 4.66 -2.39 -0.01 4.01 16 Total: -1.00 -87.03 377.06 1.14 -85.88 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: -0.43 Total: 21.27 kcal Atomic # 6 Polarization: 34.02 SS G_CDS: 6.34 Total: 40.36 kcal Atomic # 7 Polarization: -128.12 SS G_CDS: -5.49 Total: -133.61 kcal Atomic # 8 Polarization: -62.96 SS G_CDS: -1.31 Total: -64.27 kcal Atomic # 14 Polarization: 48.32 SS G_CDS: 2.03 Total: 50.35 kcal Total: -87.03 1.14 -85.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131357120.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.986 kcal (2) G-P(sol) polarization free energy of solvation -87.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds