Wall clock time and date at job start Tue Mar 31 2020 22:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 6 6 O 1.42902 * 109.46978 * 304.99724 * 4 2 1 7 7 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 8 8 O 1.21276 * 120.00395 * 244.99774 * 7 4 2 9 9 N 1.34778 * 119.99729 * 65.00371 * 7 4 2 10 10 C 1.47291 * 135.91678 * 359.62791 * 9 7 4 11 11 C 1.52540 * 87.57449 * 154.00256 * 10 9 7 12 12 C 1.47296 * 135.91626 * 179.97438 * 9 7 4 13 13 C 1.53140 * 116.54157 * 268.65270 * 11 10 9 14 14 C 1.54680 * 104.56502 * 228.35764 * 13 11 10 15 15 N 1.48665 * 104.66062 * 23.67745 * 14 13 11 16 16 C 1.46899 * 110.99779 * 201.53634 * 15 14 13 17 17 C 1.50706 * 109.47097 * 290.12461 * 16 15 14 18 18 O 1.21292 * 119.99844 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99970 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99547 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00238 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99569 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00082 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00017 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47032 * 90.00321 * 24 22 20 26 26 H 1.48507 * 109.47199 * 209.99920 * 24 22 20 27 27 H 1.48497 * 109.47529 * 330.00206 * 24 22 20 28 28 C 1.48843 * 104.43673 * 321.21764 * 15 14 13 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 0.96696 * 113.99871 * 59.99642 * 6 4 2 37 37 H 1.09003 * 113.51821 * 268.65266 * 10 9 7 38 38 H 1.08998 * 113.52284 * 39.26033 * 10 9 7 39 39 H 1.09008 * 113.51905 * 320.74811 * 12 9 7 40 40 H 1.08998 * 113.52178 * 91.27858 * 12 9 7 41 41 H 1.08998 * 110.41326 * 347.12728 * 13 11 10 42 42 H 1.08996 * 110.41756 * 109.58414 * 13 11 10 43 43 H 1.09003 * 110.40053 * 142.47531 * 14 13 11 44 44 H 1.09005 * 110.39897 * 264.76861 * 14 13 11 45 45 H 1.09001 * 109.47538 * 50.12615 * 16 15 14 46 46 H 1.09005 * 109.46684 * 170.13254 * 16 15 14 47 47 H 0.96999 * 119.99967 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00203 * 180.02562 * 23 22 20 49 49 H 1.08999 * 110.46920 * 279.67306 * 28 15 14 50 50 H 1.08993 * 110.47316 * 157.06979 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6444 1.2952 6 8 1.4702 -0.1189 2.4131 7 6 1.6413 -2.1733 1.1889 8 8 0.8660 -2.6238 2.0055 9 7 2.1464 -2.9714 0.2274 10 6 3.0725 -2.8066 -0.9060 11 6 3.3946 -4.2918 -0.7748 12 6 2.0085 -4.3878 -0.1525 13 6 4.5736 -4.6590 0.1310 14 6 5.4198 -5.6424 -0.7113 15 7 5.0675 -5.3296 -2.1213 16 6 5.3698 -6.4646 -3.0036 17 6 6.8637 -6.6255 -3.1211 18 8 7.6036 -5.8694 -2.5278 19 7 7.3774 -7.6096 -3.8854 20 6 8.7363 -7.7563 -3.9918 21 1 9.3951 -7.0831 -3.4636 22 6 9.2659 -8.7705 -4.7802 23 7 10.5685 -8.9115 -4.8819 24 14 8.1264 -9.9345 -5.6945 25 1 7.8304 -9.3818 -7.0406 26 1 8.7821 -11.2593 -5.8366 27 1 6.8607 -10.0878 -4.9332 28 6 3.6049 -5.0560 -2.0865 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 0.5042 -0.1508 2.4395 37 1 2.5744 -2.5506 -1.8411 38 1 3.9184 -2.1556 -0.6854 39 1 1.9607 -5.0644 0.7008 40 1 1.2160 -4.5682 -0.8789 41 1 5.1554 -3.7706 0.3766 42 1 4.2181 -5.1450 1.0395 43 1 6.4827 -5.4732 -0.5387 44 1 5.1559 -6.6725 -0.4715 45 1 4.9381 -7.3743 -2.5863 46 1 4.9455 -6.2805 -3.9907 47 1 6.7856 -8.2140 -4.3602 48 1 10.9382 -9.6192 -5.4325 49 1 3.0425 -5.9896 -2.0781 50 1 3.3117 -4.4409 -2.9372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147476624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:54 Heat of formation + Delta-G solvation = -72.159025 kcal Electronic energy + Delta-G solvation = -30063.082590 eV Core-core repulsion = 25898.876849 eV Total energy + Delta-G solvation = -4164.205741 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.45200 -39.78324 -38.54055 -37.33721 -36.52212 -34.31613 -33.94794 -31.88341 -31.53466 -29.89316 -28.26763 -27.72400 -27.04817 -26.38890 -25.05459 -23.79728 -21.43881 -21.23124 -19.99392 -19.46558 -18.96660 -18.21601 -17.85636 -17.02906 -16.75247 -16.18113 -15.95586 -15.66970 -15.25022 -14.99564 -14.80963 -14.53360 -14.52657 -14.03245 -13.58951 -13.50686 -13.38887 -13.28116 -13.02432 -12.75800 -12.59246 -12.57424 -12.45037 -12.25698 -12.05318 -11.85578 -11.69401 -11.64665 -11.43958 -11.41941 -11.25270 -11.23746 -10.94458 -10.88661 -10.61745 -10.52665 -9.99577 -9.76364 -9.57494 -9.06567 -8.66805 -8.21347 -8.14687 -6.32684 -3.84143 2.20872 2.40868 3.00132 3.04718 3.13239 3.67890 3.72641 3.83799 3.97291 4.06883 4.09775 4.18571 4.26979 4.35556 4.57657 4.64679 4.72999 4.79261 4.93945 5.03152 5.05051 5.13113 5.18425 5.18886 5.21309 5.27381 5.33646 5.36093 5.39022 5.40395 5.49666 5.51968 5.55650 5.65026 5.66965 5.72667 5.73586 5.83464 5.85654 5.89474 6.05707 6.34167 6.94799 7.02391 7.06730 7.34949 7.56445 7.76573 8.12634 8.58429 8.93705 9.40753 9.81614 10.80443 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027312 B = 0.001987 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.942941 B =14088.220800 C =14262.929260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.123 4.123 3 C -0.143 4.143 4 C 0.102 3.898 5 H 0.124 0.876 6 O -0.535 6.535 7 C 0.516 3.484 8 O -0.538 6.538 9 N -0.641 5.641 10 C 0.114 3.886 11 C -0.097 4.097 12 C 0.115 3.885 13 C -0.096 4.096 14 C 0.037 3.963 15 N -0.483 5.483 16 C 0.031 3.969 17 C 0.454 3.546 18 O -0.559 6.559 19 N -0.592 5.592 20 C -0.304 4.304 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.047 3.953 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.380 0.620 37 H 0.091 0.909 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.102 0.898 44 H 0.040 0.960 45 H 0.051 0.949 46 H 0.091 0.909 47 H 0.370 0.630 48 H 0.273 0.727 49 H 0.051 0.949 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.386 13.850 6.342 27.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.142 4.142 3 C -0.200 4.200 4 C 0.039 3.961 5 H 0.142 0.858 6 O -0.340 6.340 7 C 0.306 3.694 8 O -0.415 6.415 9 N -0.378 5.378 10 C -0.008 4.008 11 C -0.098 4.098 12 C -0.008 4.008 13 C -0.134 4.134 14 C -0.091 4.091 15 N -0.206 5.206 16 C -0.101 4.101 17 C 0.239 3.761 18 O -0.440 6.440 19 N -0.232 5.232 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.082 4.082 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.230 0.770 37 H 0.109 0.891 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.096 0.904 42 H 0.090 0.910 43 H 0.121 0.879 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.109 0.891 47 H 0.202 0.798 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.267 14.734 7.229 26.863 hybrid contribution -1.791 -2.054 -0.888 2.866 sum -23.059 12.680 6.341 27.069 Atomic orbital electron populations 1.21885 0.94507 1.02220 1.02712 1.21765 0.96994 0.97985 0.97474 1.21771 1.01340 0.94504 1.02433 1.21857 1.00031 0.87296 0.86912 0.85844 1.86595 1.26449 1.79295 1.41697 1.21207 0.79971 0.88442 0.79829 1.90722 1.35277 1.75684 1.39780 1.49749 1.47270 1.12161 1.28644 1.23139 0.91999 0.96803 0.88908 1.22116 0.95104 0.95680 0.96885 1.22955 0.96200 0.82825 0.98807 1.22001 0.94220 1.00240 0.96899 1.23266 1.02267 0.96466 0.87077 1.65211 1.12011 1.36515 1.06902 1.22104 0.96636 0.92700 0.98629 1.19587 0.88810 0.83667 0.84033 1.90548 1.60521 1.44850 1.48130 1.42209 1.07841 1.28949 1.44182 1.19415 0.80330 1.15318 1.28186 0.86276 1.25043 0.95866 0.97639 0.97683 1.69618 1.10179 1.32954 1.39397 0.86673 0.80552 0.81471 0.80672 1.19611 1.20217 1.19576 1.22886 0.90277 0.98939 0.96093 0.91557 0.92049 0.92560 0.89716 0.91756 0.92196 0.92204 0.76985 0.89071 0.89552 0.90159 0.89490 0.90361 0.91019 0.87942 0.94193 0.93075 0.89088 0.79762 0.91620 0.93095 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 8.58 37.16 0.32 -0.63 16 2 C -0.12 -0.77 2.71 -90.62 -0.25 -1.02 16 3 C -0.14 -0.81 9.09 37.15 0.34 -0.47 16 4 C 0.10 0.86 2.98 -27.88 -0.08 0.78 16 5 H 0.12 0.97 8.14 -51.93 -0.42 0.54 16 6 O -0.53 -5.15 12.43 -55.09 -0.68 -5.83 16 7 C 0.52 5.60 6.39 -10.99 -0.07 5.53 16 8 O -0.54 -7.88 17.10 -14.30 -0.24 -8.12 16 9 N -0.64 -5.83 3.64 -185.19 -0.67 -6.51 16 10 C 0.11 0.84 6.35 -7.65 -0.05 0.79 16 11 C -0.10 -0.85 1.29 -154.94 -0.20 -1.05 16 12 C 0.11 0.97 7.92 -7.79 -0.06 0.91 16 13 C -0.10 -1.02 6.53 -25.77 -0.17 -1.19 16 14 C 0.04 0.51 5.82 -1.96 -0.01 0.50 16 15 N -0.48 -6.83 5.06 -231.60 -1.17 -8.00 16 16 C 0.03 0.48 5.30 -4.97 -0.03 0.46 16 17 C 0.45 9.86 7.59 -10.98 -0.08 9.78 16 18 O -0.56 -14.38 14.43 5.55 0.08 -14.30 16 19 N -0.59 -13.69 5.09 -10.96 -0.06 -13.74 16 20 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 21 H 0.12 3.79 7.39 -52.49 -0.39 3.40 16 22 C 0.04 1.10 5.50 -17.47 -0.10 1.00 16 23 N -0.88 -25.45 13.96 55.50 0.77 -24.67 16 24 Si 0.88 19.00 27.74 -169.99 -4.71 14.28 16 25 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 26 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 27 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 28 C 0.05 0.45 5.95 -2.62 -0.02 0.43 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.34 6.72 -51.93 -0.35 -0.01 16 31 H 0.06 0.42 7.38 -51.93 -0.38 0.04 16 32 H 0.08 0.49 6.68 -51.93 -0.35 0.14 16 33 H 0.06 0.40 7.82 -51.93 -0.41 -0.01 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.38 2.96 6.94 45.56 0.32 3.28 16 37 H 0.09 0.52 7.96 -51.93 -0.41 0.10 16 38 H 0.09 0.61 7.95 -51.93 -0.41 0.20 16 39 H 0.08 0.75 7.93 -51.92 -0.41 0.34 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 42 H 0.07 0.73 7.83 -51.93 -0.41 0.32 16 43 H 0.10 1.77 6.93 -51.93 -0.36 1.41 16 44 H 0.04 0.54 7.82 -51.93 -0.41 0.14 16 45 H 0.05 0.70 7.88 -51.93 -0.41 0.29 16 46 H 0.09 1.21 8.13 -51.93 -0.42 0.78 16 47 H 0.37 7.48 5.76 -40.82 -0.24 7.24 16 48 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16 49 H 0.05 0.44 7.98 -51.93 -0.41 0.03 16 50 H 0.09 0.72 7.86 -51.93 -0.41 0.31 16 LS Contribution 396.15 15.07 5.97 5.97 Total: -1.00 -34.85 396.15 -8.87 -43.73 By element: Atomic # 1 Polarization: 17.49 SS G_CDS: -7.55 Total: 9.94 kcal Atomic # 6 Polarization: 7.86 SS G_CDS: -0.60 Total: 7.25 kcal Atomic # 7 Polarization: -51.80 SS G_CDS: -1.13 Total: -52.93 kcal Atomic # 8 Polarization: -27.40 SS G_CDS: -0.85 Total: -28.25 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -4.71 Total: 14.28 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.85 -8.87 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147476624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.432 kcal (2) G-P(sol) polarization free energy of solvation -34.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds