Wall clock time and date at job start Tue Mar 31 2020 22:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 6 6 O 1.42902 * 109.46978 * 304.99724 * 4 2 1 7 7 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 8 8 O 1.21276 * 120.00395 * 244.99774 * 7 4 2 9 9 N 1.34778 * 119.99729 * 65.00371 * 7 4 2 10 10 C 1.47291 * 135.91678 * 359.62791 * 9 7 4 11 11 C 1.52540 * 87.57449 * 154.00256 * 10 9 7 12 12 C 1.47296 * 135.91626 * 179.97438 * 9 7 4 13 13 C 1.53140 * 116.54157 * 268.65270 * 11 10 9 14 14 C 1.54680 * 104.56502 * 228.35764 * 13 11 10 15 15 N 1.48665 * 104.66062 * 23.67745 * 14 13 11 16 16 C 1.46899 * 110.99779 * 201.53634 * 15 14 13 17 17 C 1.50706 * 109.47097 * 290.12461 * 16 15 14 18 18 O 1.21292 * 119.99844 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99970 * 180.02562 * 17 16 15 20 20 C 1.37095 * 119.99547 * 180.02562 * 19 17 16 21 21 H 1.07994 * 120.00238 * 359.97438 * 20 19 17 22 22 C 1.38952 * 119.99569 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00082 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00017 * 359.97438 * 22 20 19 25 25 H 1.48496 * 109.47032 * 90.00321 * 24 22 20 26 26 H 1.48507 * 109.47199 * 209.99920 * 24 22 20 27 27 H 1.48497 * 109.47529 * 330.00206 * 24 22 20 28 28 C 1.48843 * 104.43673 * 321.21764 * 15 14 13 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 36 36 H 0.96696 * 113.99871 * 59.99642 * 6 4 2 37 37 H 1.09003 * 113.51821 * 268.65266 * 10 9 7 38 38 H 1.08998 * 113.52284 * 39.26033 * 10 9 7 39 39 H 1.09008 * 113.51905 * 320.74811 * 12 9 7 40 40 H 1.08998 * 113.52178 * 91.27858 * 12 9 7 41 41 H 1.08998 * 110.41326 * 347.12728 * 13 11 10 42 42 H 1.08996 * 110.41756 * 109.58414 * 13 11 10 43 43 H 1.09003 * 110.40053 * 142.47531 * 14 13 11 44 44 H 1.09005 * 110.39897 * 264.76861 * 14 13 11 45 45 H 1.09001 * 109.47538 * 50.12615 * 16 15 14 46 46 H 1.09005 * 109.46684 * 170.13254 * 16 15 14 47 47 H 0.96999 * 119.99967 * 0.02562 * 19 17 16 48 48 H 0.96996 * 120.00203 * 180.02562 * 23 22 20 49 49 H 1.08999 * 110.46920 * 279.67306 * 28 15 14 50 50 H 1.08993 * 110.47316 * 157.06979 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 1 3.1264 -0.6444 1.2952 6 8 1.4702 -0.1189 2.4131 7 6 1.6413 -2.1733 1.1889 8 8 0.8660 -2.6238 2.0055 9 7 2.1464 -2.9714 0.2274 10 6 3.0725 -2.8066 -0.9060 11 6 3.3946 -4.2918 -0.7748 12 6 2.0085 -4.3878 -0.1525 13 6 4.5736 -4.6590 0.1310 14 6 5.4198 -5.6424 -0.7113 15 7 5.0675 -5.3296 -2.1213 16 6 5.3698 -6.4646 -3.0036 17 6 6.8637 -6.6255 -3.1211 18 8 7.6036 -5.8694 -2.5278 19 7 7.3774 -7.6096 -3.8854 20 6 8.7363 -7.7563 -3.9918 21 1 9.3951 -7.0831 -3.4636 22 6 9.2659 -8.7705 -4.7802 23 7 10.5685 -8.9115 -4.8819 24 14 8.1264 -9.9345 -5.6945 25 1 7.8304 -9.3818 -7.0406 26 1 8.7821 -11.2593 -5.8366 27 1 6.8607 -10.0878 -4.9332 28 6 3.6049 -5.0560 -2.0865 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.6768 1.9562 0.8900 34 1 3.1300 1.4424 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 0.5042 -0.1508 2.4395 37 1 2.5744 -2.5506 -1.8411 38 1 3.9184 -2.1556 -0.6854 39 1 1.9607 -5.0644 0.7008 40 1 1.2160 -4.5682 -0.8789 41 1 5.1554 -3.7706 0.3766 42 1 4.2181 -5.1450 1.0395 43 1 6.4827 -5.4732 -0.5387 44 1 5.1559 -6.6725 -0.4715 45 1 4.9381 -7.3743 -2.5863 46 1 4.9455 -6.2805 -3.9907 47 1 6.7856 -8.2140 -4.3602 48 1 10.9382 -9.6192 -5.4325 49 1 3.0425 -5.9896 -2.0781 50 1 3.3117 -4.4409 -2.9372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147476624.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:53 Heat of formation + Delta-G solvation = -100.563664 kcal Electronic energy + Delta-G solvation = -30064.314308 eV Core-core repulsion = 25898.876849 eV Total energy + Delta-G solvation = -4165.437459 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.20242 -40.69458 -40.03660 -38.19162 -37.55610 -35.90436 -34.89987 -33.74134 -32.70448 -30.77552 -29.19794 -28.23416 -28.06985 -27.07707 -26.31585 -25.10179 -22.54337 -21.81361 -21.22392 -20.70632 -20.26576 -19.55201 -18.59457 -17.79248 -17.73636 -17.35421 -16.90529 -16.67732 -16.44249 -16.21741 -15.94400 -15.75269 -15.18498 -15.13762 -14.87344 -14.53115 -14.50793 -14.22432 -14.13229 -13.91929 -13.62433 -13.43078 -13.33959 -13.03696 -12.97513 -12.90887 -12.73962 -12.53241 -12.39296 -12.32975 -12.24085 -12.14789 -11.97925 -11.92158 -11.86975 -11.53842 -11.45854 -11.26479 -10.53784 -10.34656 -10.21190 -9.79398 -9.31348 -8.38804 -5.99294 1.31417 1.37500 1.43684 1.46009 1.70836 2.00964 2.25030 2.67648 3.09254 3.17379 3.19862 3.32256 3.40548 3.58650 3.67495 3.75084 3.84132 3.96020 4.11816 4.20537 4.25938 4.35568 4.42343 4.49355 4.52157 4.53302 4.57011 4.61478 4.66591 4.74016 4.76834 4.80292 4.85995 4.88184 4.93838 4.96562 4.98001 5.12385 5.16562 5.23193 5.28106 5.40831 5.55466 5.89551 5.94642 6.07344 6.43882 6.62603 6.63178 6.92206 6.99113 7.43902 8.02137 8.78955 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027312 B = 0.001987 C = 0.001963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.942941 B =14088.220800 C =14262.929260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.141 4.141 4 C 0.103 3.897 5 H 0.128 0.872 6 O -0.550 6.550 7 C 0.512 3.488 8 O -0.584 6.584 9 N -0.642 5.642 10 C 0.117 3.883 11 C -0.091 4.091 12 C 0.116 3.884 13 C -0.089 4.089 14 C 0.038 3.962 15 N -0.507 5.507 16 C 0.044 3.956 17 C 0.451 3.549 18 O -0.607 6.607 19 N -0.595 5.595 20 C -0.325 4.325 21 H 0.054 0.946 22 C -0.019 4.019 23 N -0.937 5.937 24 Si 0.966 3.034 25 H -0.256 1.256 26 H -0.278 1.278 27 H -0.230 1.230 28 C 0.053 3.947 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.095 0.905 33 H 0.056 0.944 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.386 0.614 37 H 0.122 0.878 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.113 0.887 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.079 0.921 46 H 0.126 0.874 47 H 0.389 0.611 48 H 0.278 0.722 49 H 0.071 0.929 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.303 13.536 4.243 29.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C -0.198 4.198 4 C 0.040 3.960 5 H 0.146 0.854 6 O -0.357 6.357 7 C 0.303 3.697 8 O -0.465 6.465 9 N -0.377 5.377 10 C -0.004 4.004 11 C -0.093 4.093 12 C -0.007 4.007 13 C -0.127 4.127 14 C -0.090 4.090 15 N -0.231 5.231 16 C -0.088 4.088 17 C 0.239 3.761 18 O -0.491 6.491 19 N -0.237 5.237 20 C -0.454 4.454 21 H 0.072 0.928 22 C -0.217 4.217 23 N -0.578 5.578 24 Si 0.786 3.214 25 H -0.180 1.180 26 H -0.203 1.203 27 H -0.154 1.154 28 C -0.075 4.075 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.114 0.886 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.237 0.763 37 H 0.139 0.861 38 H 0.107 0.893 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.144 0.856 47 H 0.225 0.775 48 H 0.087 0.913 49 H 0.089 0.911 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -25.205 14.435 5.115 29.493 hybrid contribution -0.464 -1.859 -0.138 1.921 sum -25.669 12.576 4.978 29.014 Atomic orbital electron populations 1.21869 0.94325 1.01446 1.03457 1.21732 0.97063 0.98106 0.96496 1.21756 1.01407 0.94015 1.02653 1.21980 1.00225 0.86116 0.87639 0.85431 1.86562 1.27119 1.79350 1.42626 1.21610 0.79371 0.89312 0.79418 1.90693 1.37549 1.76665 1.41604 1.49801 1.46838 1.12485 1.28575 1.23331 0.91963 0.95770 0.89358 1.21964 0.94295 0.96835 0.96160 1.23068 0.96495 0.82211 0.98895 1.21892 0.94664 0.99171 0.96982 1.23106 1.00119 0.97490 0.88331 1.65131 1.15595 1.36082 1.06308 1.22033 0.90963 0.94672 1.01125 1.20963 0.91790 0.81726 0.81607 1.90539 1.62825 1.46314 1.49427 1.42048 1.06119 1.30213 1.45311 1.18975 0.82194 1.15299 1.28930 0.92798 1.26137 0.97919 0.99409 0.98222 1.69810 1.13084 1.34215 1.40674 0.85353 0.79086 0.77543 0.79441 1.18040 1.20344 1.15359 1.22988 0.87145 1.00326 0.96999 0.90265 0.91901 0.94015 0.88633 0.92478 0.92094 0.91035 0.76324 0.86054 0.89296 0.91342 0.86920 0.91059 0.90730 0.92639 0.93955 0.90277 0.85576 0.77534 0.91261 0.91063 0.87072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 8.58 71.98 0.62 -0.96 16 2 C -0.11 -1.20 2.71 -10.79 -0.03 -1.23 16 3 C -0.14 -1.31 9.09 71.98 0.65 -0.66 16 4 C 0.10 1.62 2.98 29.85 0.09 1.71 16 5 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 6 O -0.55 -10.41 12.43 -129.99 -1.62 -12.02 16 7 C 0.51 10.59 6.39 87.66 0.56 11.15 16 8 O -0.58 -17.08 17.10 15.97 0.27 -16.80 16 9 N -0.64 -10.22 3.64 -858.19 -3.12 -13.34 16 10 C 0.12 1.33 6.35 83.61 0.53 1.86 16 11 C -0.09 -1.32 1.29 -52.45 -0.07 -1.39 16 12 C 0.12 1.60 7.92 83.52 0.66 2.26 16 13 C -0.09 -1.82 6.53 31.21 0.20 -1.62 16 14 C 0.04 1.04 5.82 86.53 0.50 1.54 16 15 N -0.51 -13.12 5.06 -886.63 -4.49 -17.61 16 16 C 0.04 1.20 5.30 85.56 0.45 1.65 16 17 C 0.45 19.54 7.59 87.66 0.66 20.20 16 18 O -0.61 -32.68 14.43 -3.07 -0.04 -32.72 16 19 N -0.59 -27.21 5.09 -306.98 -1.56 -28.78 16 20 C -0.32 -18.76 10.16 84.04 0.85 -17.90 16 21 H 0.05 3.73 7.39 -2.91 -0.02 3.71 16 22 C -0.02 -1.03 5.50 84.93 0.47 -0.56 16 23 N -0.94 -56.25 13.96 21.66 0.30 -55.95 16 24 Si 0.97 38.03 27.74 68.60 1.90 39.93 16 25 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 26 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.52 6.52 99.48 0.65 -6.87 16 28 C 0.05 0.78 5.95 86.01 0.51 1.29 16 29 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.62 6.72 -2.39 -0.02 0.60 16 31 H 0.04 0.56 7.38 -2.38 -0.02 0.54 16 32 H 0.10 0.79 6.68 -2.39 -0.02 0.78 16 33 H 0.06 0.62 7.82 -2.39 -0.02 0.60 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.39 6.01 6.94 -74.06 -0.51 5.50 16 37 H 0.12 0.74 7.96 -2.39 -0.02 0.72 16 38 H 0.09 1.02 7.95 -2.39 -0.02 1.00 16 39 H 0.07 1.14 7.93 -2.38 -0.02 1.12 16 40 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.54 7.85 -2.39 -0.02 1.52 16 42 H 0.07 1.47 7.83 -2.39 -0.02 1.45 16 43 H 0.06 2.05 6.93 -2.39 -0.02 2.03 16 44 H 0.04 1.12 7.82 -2.38 -0.02 1.10 16 45 H 0.08 1.80 7.88 -2.39 -0.02 1.78 16 46 H 0.13 2.67 8.13 -2.38 -0.02 2.65 16 47 H 0.39 14.56 5.76 -92.71 -0.53 14.03 16 48 H 0.28 15.26 8.31 -92.71 -0.77 14.49 16 49 H 0.07 0.82 7.98 -2.39 -0.02 0.81 16 50 H 0.11 1.17 7.86 -2.39 -0.02 1.15 16 Total: -1.00 -83.98 396.15 -1.83 -85.81 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -0.15 Total: 34.13 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: 6.67 Total: 17.36 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -8.87 Total: -115.67 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -1.39 Total: -61.55 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 1.90 Total: 39.93 kcal Total: -83.98 -1.83 -85.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147476624.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.757 kcal (2) G-P(sol) polarization free energy of solvation -83.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds