Wall clock time and date at job start Tue Mar 31 2020 23:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50696 * 120.00218 * 2 1 4 4 H 1.09008 * 109.48918 * 359.96697 * 3 2 1 5 5 O 1.42900 * 109.48091 * 239.94217 * 3 2 1 6 6 C 1.42898 * 114.09892 * 178.85836 * 5 3 2 7 7 C 1.53088 * 109.41628 * 61.15710 * 6 5 3 8 8 C 1.53183 * 109.16359 * 302.39285 * 7 6 5 9 9 C 1.53087 * 109.48304 * 119.99507 * 3 2 1 10 10 H 1.09006 * 109.57110 * 57.65815 * 9 3 2 11 11 C 1.50695 * 109.52507 * 297.50156 * 9 3 2 12 12 O 1.21285 * 120.00087 * 0.30534 * 11 9 3 13 13 N 1.34777 * 120.00450 * 180.31231 * 11 9 3 14 14 C 1.46499 * 120.00580 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.47185 * 180.02562 * 14 13 11 16 16 C 1.53002 * 109.46891 * 180.02562 * 15 14 13 17 17 N 1.46906 * 109.47053 * 179.97438 * 16 15 14 18 18 C 1.46895 * 110.99789 * 179.97438 * 17 16 15 19 19 C 1.50704 * 109.47030 * 179.97438 * 18 17 16 20 20 O 1.21294 * 119.99926 * 0.02562 * 19 18 17 21 21 N 1.34767 * 120.00169 * 179.97438 * 19 18 17 22 22 C 1.37102 * 120.00058 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00073 * 0.02562 * 22 21 19 24 24 C 1.38957 * 120.00049 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00070 * 179.97438 * 24 22 21 26 26 Si 1.86794 * 119.99979 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.47423 * 89.99828 * 26 24 22 28 28 H 1.48498 * 109.47259 * 209.99980 * 26 24 22 29 29 H 1.48501 * 109.47134 * 329.99860 * 26 24 22 30 30 H 1.07999 * 120.00263 * 180.02562 * 1 2 3 31 31 H 1.08004 * 120.00258 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.99365 * 179.97438 * 2 1 3 33 33 H 1.09004 * 109.48371 * 301.17099 * 6 5 3 34 34 H 1.09005 * 109.49162 * 181.15009 * 6 5 3 35 35 H 1.09002 * 109.52586 * 182.48508 * 7 6 5 36 36 H 1.08996 * 109.52405 * 62.29532 * 7 6 5 37 37 H 1.09007 * 109.54020 * 297.11145 * 8 7 6 38 38 H 1.08994 * 109.54312 * 176.84861 * 8 7 6 39 39 H 0.97002 * 119.99403 * 0.02562 * 13 11 9 40 40 H 1.09001 * 109.46813 * 59.99993 * 14 13 11 41 41 H 1.08996 * 109.46733 * 300.00119 * 14 13 11 42 42 H 1.09001 * 109.47372 * 60.00187 * 15 14 13 43 43 H 1.09004 * 109.47108 * 299.99931 * 15 14 13 44 44 H 1.08992 * 109.47056 * 59.99654 * 16 15 14 45 45 H 1.09004 * 109.47006 * 299.99770 * 16 15 14 46 46 H 1.00899 * 110.99484 * 303.95475 * 17 16 15 47 47 H 1.08996 * 109.47424 * 299.99656 * 18 17 16 48 48 H 1.09002 * 109.47411 * 60.00282 * 18 17 16 49 49 H 0.97000 * 120.00220 * 0.02562 * 21 19 18 50 50 H 0.97000 * 119.99976 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3555 2.1338 -0.0006 5 8 2.8862 1.3803 -1.1660 6 6 3.6288 2.5960 -1.2787 7 6 4.5719 2.7292 -0.0802 8 6 3.7511 2.6875 1.2126 9 6 2.9437 1.3864 1.2499 10 1 3.6248 0.5357 1.2730 11 6 2.0739 1.3687 2.4804 12 8 0.8685 1.2923 2.3699 13 7 2.6354 1.4378 3.7037 14 6 1.7898 1.4211 4.8999 15 6 2.6701 1.5108 6.1480 16 6 1.7870 1.4927 7.3973 17 7 2.6323 1.5783 8.5958 18 6 1.8165 1.5641 9.8173 19 6 2.7162 1.6525 11.0232 20 8 3.9186 1.7211 10.8790 21 7 2.1847 1.6564 12.2616 22 6 3.0031 1.7374 13.3586 23 1 4.0737 1.7985 13.2302 24 6 2.4551 1.7409 14.6355 25 7 3.2396 1.8180 15.6870 26 14 0.6034 1.6345 14.8575 27 1 0.1978 0.2095 14.9567 28 1 0.2120 2.3481 16.0996 29 1 -0.0716 2.2614 13.6928 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5401 0.9353 -0.0004 32 1 1.8499 -0.9354 0.0004 33 1 2.9412 3.4417 -1.2960 34 1 4.2113 2.5824 -2.1999 35 1 5.1071 3.6768 -0.1414 36 1 5.2857 1.9056 -0.0851 37 1 3.0716 3.5394 1.2406 38 1 4.4213 2.7256 2.0713 39 1 3.5994 1.4994 3.7920 40 1 1.2154 0.4951 4.9258 41 1 1.1080 2.2711 4.8747 42 1 3.2443 2.4370 6.1219 43 1 3.3523 0.6610 6.1734 44 1 1.2132 0.5664 7.4232 45 1 1.1045 2.3423 7.3722 46 1 3.3168 0.8372 8.6090 47 1 1.1349 2.4146 9.8090 48 1 1.2423 0.6386 9.8601 49 1 1.2231 1.6019 12.3769 50 1 2.8570 1.8201 16.5784 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158310136.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:34:17 Heat of formation + Delta-G solvation = -131.058580 kcal Electronic energy + Delta-G solvation = -28367.019835 eV Core-core repulsion = 24200.260017 eV Total energy + Delta-G solvation = -4166.759818 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.52699 -40.31099 -39.64111 -37.65176 -36.17662 -35.74272 -34.93173 -34.80121 -33.75677 -32.43186 -31.11525 -28.72119 -26.60704 -26.00868 -25.33957 -24.06181 -22.57259 -22.01214 -21.29202 -20.94093 -20.91227 -20.24363 -18.44682 -17.85909 -17.44777 -17.28452 -17.03947 -16.81202 -16.58964 -16.34646 -15.76591 -15.72582 -15.54174 -15.35113 -14.98210 -14.89410 -14.85419 -14.56174 -14.26650 -14.11883 -13.94992 -13.51613 -13.37579 -13.20325 -12.90262 -12.82506 -12.66976 -12.54471 -12.41811 -12.41636 -12.07316 -11.98087 -11.90112 -11.83438 -11.51548 -11.41198 -10.87323 -10.68198 -10.44781 -10.25356 -10.14413 -10.04098 -9.33601 -8.41698 -6.02750 1.29775 1.30739 1.35522 1.44799 1.62690 1.95161 2.09737 2.22928 2.74269 2.96659 3.14934 3.41438 3.54685 3.65848 3.74819 3.98167 4.00504 4.06171 4.09268 4.14697 4.18441 4.22533 4.27792 4.37846 4.44125 4.54355 4.56220 4.58397 4.66892 4.71571 4.78908 4.79600 4.85768 4.95312 5.01945 5.07027 5.17274 5.22194 5.28070 5.45512 5.52283 5.66572 5.84200 5.90024 6.04105 6.22418 6.39014 6.53333 6.59338 6.87514 7.23530 7.39332 7.95693 8.75868 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.001442 C = 0.001388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.420423 B =19413.313333 C =20167.365309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.166 4.166 3 C 0.144 3.856 4 H 0.053 0.947 5 O -0.390 6.390 6 C 0.047 3.953 7 C -0.150 4.150 8 C -0.114 4.114 9 C -0.129 4.129 10 H 0.117 0.883 11 C 0.518 3.482 12 O -0.567 6.567 13 N -0.719 5.719 14 C 0.129 3.871 15 C -0.117 4.117 16 C 0.064 3.936 17 N -0.688 5.688 18 C 0.061 3.939 19 C 0.447 3.553 20 O -0.615 6.615 21 N -0.591 5.591 22 C -0.331 4.331 23 H 0.055 0.945 24 C -0.014 4.014 25 N -0.934 5.934 26 Si 0.965 3.035 27 H -0.257 1.257 28 H -0.275 1.275 29 H -0.231 1.231 30 H 0.110 0.890 31 H 0.090 0.910 32 H 0.115 0.885 33 H 0.052 0.948 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.413 0.587 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.043 0.957 45 H 0.081 0.919 46 H 0.345 0.655 47 H 0.113 0.887 48 H 0.078 0.922 49 H 0.390 0.610 50 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.620 -0.733 -35.217 35.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.184 4.184 3 C 0.086 3.914 4 H 0.071 0.929 5 O -0.310 6.310 6 C -0.029 4.029 7 C -0.187 4.187 8 C -0.151 4.151 9 C -0.150 4.150 10 H 0.135 0.865 11 C 0.304 3.696 12 O -0.445 6.445 13 N -0.371 5.371 14 C 0.004 3.996 15 C -0.155 4.155 16 C -0.065 4.065 17 N -0.320 5.320 18 C -0.071 4.071 19 C 0.235 3.765 20 O -0.499 6.499 21 N -0.232 5.232 22 C -0.460 4.460 23 H 0.074 0.926 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.785 3.215 27 H -0.181 1.181 28 H -0.201 1.201 29 H -0.154 1.154 30 H 0.129 0.871 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.070 0.930 34 H 0.129 0.871 35 H 0.115 0.885 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.112 0.888 39 H 0.250 0.750 40 H 0.080 0.920 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.062 0.938 45 H 0.099 0.901 46 H 0.164 0.836 47 H 0.131 0.869 48 H 0.095 0.905 49 H 0.226 0.774 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -5.593 -0.187 -35.316 35.756 hybrid contribution -0.443 -0.706 1.238 1.492 sum -6.036 -0.892 -34.078 34.620 Atomic orbital electron populations 1.23856 0.95789 1.02107 0.96677 1.22560 0.95888 0.97051 1.02868 1.20757 0.90321 0.96297 0.84061 0.92855 1.87978 1.60421 1.40253 1.42324 1.22861 0.93923 0.86225 0.99849 1.22187 0.98452 1.04527 0.93564 1.21653 0.98692 0.94589 1.00194 1.21918 0.98199 1.02592 0.92314 0.86468 1.20672 0.88529 0.75232 0.85121 1.90715 1.16277 1.50354 1.87197 1.45933 1.11490 1.74570 1.05117 1.21166 0.93247 1.01892 0.83245 1.21600 0.98256 1.03871 0.91788 1.21905 0.94994 1.01469 0.88174 1.60038 1.16877 1.54477 1.00657 1.21630 0.94318 1.03803 0.87339 1.21014 0.89405 0.81172 0.84880 1.90540 1.17850 1.55082 1.86442 1.42037 1.08530 1.67477 1.05199 1.19024 0.91750 1.50200 0.85027 0.92648 1.26115 1.05324 0.96033 0.93820 1.69803 1.38342 1.50112 0.99175 0.85362 0.76478 0.79859 0.79809 1.18144 1.20052 1.15446 0.87133 0.89174 0.86657 0.92964 0.87083 0.88475 0.90191 0.91735 0.88809 0.75007 0.92022 0.91940 0.90362 0.90627 0.93838 0.90081 0.83591 0.86906 0.90460 0.77447 0.91133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.62 13.11 67.78 0.89 -1.73 16 2 C -0.17 -2.94 8.04 25.64 0.21 -2.73 16 3 C 0.14 2.38 2.17 29.88 0.06 2.44 16 4 H 0.05 1.02 7.69 -2.38 -0.02 1.00 16 5 O -0.39 -6.36 10.39 -148.98 -1.55 -7.91 16 6 C 0.05 0.47 6.84 72.01 0.49 0.96 16 7 C -0.15 -1.00 6.14 30.68 0.19 -0.81 16 8 C -0.11 -0.96 5.18 30.71 0.16 -0.80 16 9 C -0.13 -1.62 2.22 -11.45 -0.03 -1.65 16 10 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 11 C 0.52 8.75 6.90 87.66 0.60 9.36 16 12 O -0.57 -13.73 14.01 -3.05 -0.04 -13.77 16 13 N -0.72 -9.27 5.46 -463.07 -2.53 -11.80 16 14 C 0.13 1.89 5.67 86.38 0.49 2.38 16 15 C -0.12 -1.71 5.59 30.59 0.17 -1.54 16 16 C 0.06 1.16 5.69 86.30 0.49 1.65 16 17 N -0.69 -18.75 6.13 -517.93 -3.17 -21.92 16 18 C 0.06 1.80 6.17 85.56 0.53 2.33 16 19 C 0.45 19.89 7.82 87.66 0.69 20.58 16 20 O -0.61 -33.68 15.78 -3.07 -0.05 -33.73 16 21 N -0.59 -27.60 5.09 -306.98 -1.56 -29.16 16 22 C -0.33 -19.32 10.16 84.04 0.85 -18.47 16 23 H 0.06 3.86 7.39 -2.91 -0.02 3.84 16 24 C -0.01 -0.78 5.50 84.93 0.47 -0.32 16 25 N -0.93 -56.10 13.96 21.67 0.30 -55.79 16 26 Si 0.97 38.45 27.74 68.60 1.90 40.35 16 27 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 28 H -0.28 -10.93 7.11 99.48 0.71 -10.22 16 29 H -0.23 -7.73 6.52 99.48 0.65 -7.09 16 30 H 0.11 1.62 8.06 -2.91 -0.02 1.59 16 31 H 0.09 1.70 7.83 -2.91 -0.02 1.68 16 32 H 0.12 1.84 8.06 -2.91 -0.02 1.82 16 33 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 36 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 38 H 0.09 0.48 7.67 -2.39 -0.02 0.46 16 39 H 0.41 3.28 7.96 -92.71 -0.74 2.54 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.08 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 46 H 0.35 9.99 8.43 -89.69 -0.76 9.23 16 47 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 48 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.39 14.99 5.76 -92.71 -0.53 14.46 16 50 H 0.28 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.89 407.62 -1.57 -82.45 By element: Atomic # 1 Polarization: 40.76 SS G_CDS: -1.14 Total: 39.63 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.26 Total: 11.65 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -6.96 Total: -118.68 kcal Atomic # 8 Polarization: -53.77 SS G_CDS: -1.64 Total: -55.41 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -80.89 -1.57 -82.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158310136.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.604 kcal (2) G-P(sol) polarization free energy of solvation -80.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds