Wall clock time and date at job start Tue Mar 31 2020 23:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47163 * 2 1 4 4 C 1.50698 * 109.47021 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00068 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99937 * 179.97438 * 4 3 2 7 7 C 1.46898 * 120.55588 * 0.02562 * 6 4 3 8 8 C 1.53251 * 108.94071 * 126.85291 * 7 6 4 9 9 C 1.52987 * 109.14224 * 54.37684 * 8 7 6 10 10 H 1.09004 * 109.47546 * 58.16711 * 9 8 7 11 11 O 1.42903 * 109.89972 * 178.44460 * 9 8 7 12 12 C 1.43084 * 113.56647 * 178.84610 * 11 9 8 13 13 C 1.53066 * 109.40573 * 301.49738 * 12 11 9 14 14 N 1.47078 * 109.39250 * 56.52467 * 13 12 11 15 15 C 1.46902 * 111.00027 * 177.90307 * 14 13 12 16 16 C 1.50706 * 109.46577 * 293.42805 * 15 14 13 17 17 O 1.21288 * 120.00224 * 359.72334 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00025 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99595 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00115 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99938 * 23 21 19 27 27 C 1.46906 * 110.59157 * 301.55836 * 14 13 12 28 28 H 1.08999 * 109.53833 * 298.96212 * 27 14 13 29 29 C 1.46944 * 120.55428 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46672 * 60.00154 * 1 2 3 31 31 H 1.08990 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46958 * 300.00215 * 1 2 3 33 33 H 1.08994 * 109.47223 * 240.00087 * 2 1 3 34 34 H 1.08995 * 109.47241 * 119.99414 * 2 1 3 35 35 H 1.08998 * 109.47401 * 59.99696 * 3 2 1 36 36 H 1.09001 * 109.46950 * 300.00008 * 3 2 1 37 37 H 1.08995 * 109.56415 * 7.00996 * 7 6 4 38 38 H 1.09009 * 109.64705 * 246.74079 * 7 6 4 39 39 H 1.08999 * 109.52018 * 294.47972 * 8 7 6 40 40 H 1.08997 * 109.57816 * 174.31225 * 8 7 6 41 41 H 1.08999 * 109.48464 * 61.47364 * 12 11 9 42 42 H 1.08993 * 109.48111 * 181.50993 * 12 11 9 43 43 H 1.09002 * 109.48730 * 296.55128 * 13 12 11 44 44 H 1.08995 * 109.48486 * 176.50078 * 13 12 11 45 45 H 1.09000 * 109.47263 * 173.43006 * 15 14 13 46 46 H 1.09001 * 109.47582 * 53.42285 * 15 14 13 47 47 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 48 48 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58709 * 113.78085 * 29 6 4 50 50 H 1.08997 * 109.63208 * 353.23457 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2210 2.6097 0.0002 7 6 3.4989 3.8890 -0.0003 8 6 4.0114 4.7500 1.1593 9 6 5.5319 4.8809 1.0530 10 1 5.7923 5.3223 0.0910 11 8 6.0235 5.7113 2.1070 12 6 7.4459 5.8660 2.0974 13 6 8.1078 4.4906 2.2107 14 7 7.6315 3.6279 1.1189 15 6 8.2833 2.3122 1.1649 16 6 9.7525 2.4690 0.8680 17 8 10.2104 3.5679 0.6356 18 7 10.5567 1.3875 0.8557 19 6 11.8931 1.5301 0.5851 20 1 12.3015 2.5090 0.3822 21 6 12.7221 0.4150 0.5720 22 7 12.2250 -0.7763 0.8184 23 14 14.5432 0.6092 0.2040 24 1 15.2829 0.8359 1.4715 25 1 15.0499 -0.6232 -0.4514 26 1 14.7443 1.7696 -0.7008 27 6 6.1694 3.4929 1.1675 28 1 5.8769 3.0343 2.1120 29 6 5.6903 2.6239 0.0014 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9565 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 2.4318 3.7058 0.1251 38 1 3.6718 4.4071 -0.9437 39 1 3.7517 4.2771 2.1065 40 1 3.5561 5.7390 1.1089 41 1 7.7536 6.3418 1.1662 42 1 7.7498 6.4864 2.9404 43 1 7.8490 4.0403 3.1691 44 1 9.1899 4.6010 2.1411 45 1 7.8304 1.6562 0.4215 46 1 8.1575 1.8787 2.1570 47 1 10.1898 0.5082 1.0376 48 1 12.8038 -1.5547 0.8096 49 1 6.0525 3.0408 -0.9384 50 1 6.0663 1.6082 0.1235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176882102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:45 Heat of formation + Delta-G solvation = -108.830766 kcal Electronic energy + Delta-G solvation = -30901.842010 eV Core-core repulsion = 26736.046063 eV Total energy + Delta-G solvation = -4165.795947 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -40.84346 -39.49171 -38.11286 -36.63085 -35.53685 -34.67161 -33.83394 -32.24721 -31.25752 -30.86238 -29.14689 -28.25104 -26.07758 -25.21340 -24.22158 -22.92446 -22.24481 -21.58161 -20.27780 -19.19338 -19.16230 -17.85659 -17.54363 -16.54023 -16.31770 -15.98597 -15.95843 -15.78890 -15.20182 -14.85596 -14.66698 -14.45335 -14.22460 -14.06519 -13.85011 -13.66633 -13.51027 -13.28333 -13.06590 -12.99932 -12.52046 -12.31961 -12.21868 -12.11745 -11.91982 -11.65966 -11.52515 -11.47042 -11.25106 -11.17826 -11.03947 -11.02454 -10.81777 -10.39724 -10.38028 -10.21620 -9.93210 -9.56279 -9.46991 -8.88769 -8.48321 -8.01833 -7.92642 -6.41007 -3.82165 2.45596 2.69001 3.17852 3.26708 3.32329 3.61991 3.81081 3.89624 4.20736 4.21542 4.50008 4.56306 4.59590 4.69059 4.73608 4.88860 5.00034 5.05576 5.07992 5.10652 5.17160 5.22876 5.24684 5.28031 5.29885 5.36113 5.43297 5.47314 5.58060 5.60904 5.67447 5.75102 5.79894 5.83479 5.86529 5.90081 5.94024 6.04030 6.13185 6.21537 6.26872 6.30143 7.09542 7.11785 7.16343 7.28093 7.55442 8.00220 8.05954 8.61323 9.17839 9.54259 10.05348 10.76564 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.002909 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.933897 B = 9621.573137 C =11663.816798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.139 4.139 4 C 0.512 3.488 5 O -0.535 6.535 6 N -0.615 5.615 7 C 0.110 3.890 8 C -0.127 4.127 9 C 0.101 3.899 10 H 0.070 0.930 11 O -0.386 6.386 12 C 0.068 3.932 13 C 0.017 3.983 14 N -0.504 5.504 15 C 0.040 3.960 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.900 5.900 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.269 1.269 27 C 0.041 3.959 28 H 0.050 0.950 29 C 0.116 3.884 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.032 0.968 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.082 0.918 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.634 7.797 0.266 24.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.179 4.179 4 C 0.301 3.699 5 O -0.411 6.411 6 N -0.349 5.349 7 C -0.013 4.013 8 C -0.165 4.165 9 C 0.042 3.958 10 H 0.087 0.913 11 O -0.305 6.305 12 C -0.009 4.009 13 C -0.110 4.110 14 N -0.230 5.230 15 C -0.091 4.091 16 C 0.230 3.770 17 O -0.464 6.464 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.541 5.541 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.069 4.069 28 H 0.068 0.932 29 C -0.006 4.006 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.050 0.950 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.226 0.774 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.885 8.078 -0.204 24.269 hybrid contribution 0.779 -1.004 0.614 1.411 sum -22.106 7.074 0.410 23.214 Atomic orbital electron populations 1.21790 0.95471 1.02013 1.01682 1.21305 0.95222 0.94652 1.03756 1.21756 0.91694 1.00266 1.04164 1.20811 0.90410 0.83055 0.75641 1.90732 1.70364 1.30828 1.49184 1.48170 1.06853 1.06050 1.73873 1.21752 0.96870 0.83865 0.98840 1.21909 0.94063 1.01084 0.99485 1.22038 0.93023 0.89206 0.91510 0.91252 1.87907 1.22271 1.68943 1.51344 1.22680 0.79446 0.96237 1.02496 1.22956 1.03663 0.93231 0.91194 1.61836 1.02188 1.12794 1.46133 1.21980 0.95500 0.90484 1.01152 1.19632 0.86862 0.85592 0.84919 1.90470 1.76023 1.25549 1.54356 1.41869 1.08412 1.08132 1.61409 1.19687 0.82888 0.95623 1.44689 0.87881 1.25279 1.00644 0.94655 0.97374 1.69619 1.36785 0.98497 1.49198 0.85857 0.81995 0.77796 0.78630 1.20431 1.20908 1.19401 1.22583 0.89447 0.96640 0.98207 0.93209 1.21659 0.78523 1.02005 0.98434 0.92708 0.92375 0.92723 0.91135 0.91170 0.88907 0.88888 0.88928 0.90635 0.90649 0.89321 0.91958 0.88531 0.94959 0.86601 0.88909 0.93269 0.77432 0.91823 0.90020 0.88215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.91 37.16 0.37 -0.53 16 2 C -0.11 -0.92 5.22 -26.72 -0.14 -1.06 16 3 C -0.14 -1.03 4.05 -27.88 -0.11 -1.14 16 4 C 0.51 6.00 7.70 -10.99 -0.08 5.91 16 5 O -0.53 -8.64 15.39 5.56 0.09 -8.55 16 6 N -0.61 -6.59 2.98 -172.79 -0.51 -7.10 16 7 C 0.11 0.77 6.33 -3.70 -0.02 0.75 16 8 C -0.13 -1.06 5.76 -26.61 -0.15 -1.21 16 9 C 0.10 1.20 2.62 -26.65 -0.07 1.13 16 10 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 11 O -0.39 -5.21 10.50 -35.23 -0.37 -5.58 16 12 C 0.07 0.93 7.00 37.19 0.26 1.19 16 13 C 0.02 0.28 5.29 -3.69 -0.02 0.26 16 14 N -0.50 -8.53 4.28 -227.71 -0.97 -9.50 16 15 C 0.04 0.74 5.23 -4.97 -0.03 0.72 16 16 C 0.44 10.53 7.49 -10.98 -0.08 10.45 16 17 O -0.58 -15.32 13.95 5.55 0.08 -15.24 16 18 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.86 13.05 55.50 0.72 -24.13 16 23 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 C 0.04 0.57 1.97 -67.56 -0.13 0.44 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 C 0.12 1.55 5.27 -3.74 -0.02 1.53 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.09 0.52 7.68 -51.93 -0.40 0.12 16 36 H 0.09 0.50 7.95 -51.93 -0.41 0.09 16 37 H 0.09 0.40 5.92 -51.93 -0.31 0.10 16 38 H 0.08 0.47 8.14 -51.92 -0.42 0.04 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.12 2.23 5.91 -51.93 -0.31 1.93 16 45 H 0.09 1.63 5.90 -51.93 -0.31 1.33 16 46 H 0.05 0.87 8.12 -51.93 -0.42 0.45 16 47 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 48 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.10 1.54 5.37 -51.93 -0.28 1.26 16 LS Contribution 389.44 15.07 5.87 5.87 Total: -1.00 -33.37 389.44 -8.84 -42.21 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -8.18 Total: 9.89 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: -0.48 Total: 10.44 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: -0.82 Total: -55.22 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.21 Total: -29.37 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.37 -8.84 -42.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176882102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.622 kcal (2) G-P(sol) polarization free energy of solvation -33.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds