Wall clock time and date at job start Tue Mar 31 2020 23:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47163 * 2 1 4 4 C 1.50698 * 109.47021 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00068 * 359.97438 * 4 3 2 6 6 N 1.34778 * 119.99937 * 179.97438 * 4 3 2 7 7 C 1.46898 * 120.55588 * 0.02562 * 6 4 3 8 8 C 1.53251 * 108.94071 * 126.85291 * 7 6 4 9 9 C 1.52987 * 109.14224 * 54.37684 * 8 7 6 10 10 H 1.09004 * 109.47546 * 58.16711 * 9 8 7 11 11 O 1.42903 * 109.89972 * 178.44460 * 9 8 7 12 12 C 1.43084 * 113.56647 * 178.84610 * 11 9 8 13 13 C 1.53066 * 109.40573 * 301.49738 * 12 11 9 14 14 N 1.47078 * 109.39250 * 56.52467 * 13 12 11 15 15 C 1.46902 * 111.00027 * 177.90307 * 14 13 12 16 16 C 1.50706 * 109.46577 * 293.42805 * 15 14 13 17 17 O 1.21288 * 120.00224 * 359.72334 * 16 15 14 18 18 N 1.34777 * 119.99766 * 179.97438 * 16 15 14 19 19 C 1.37095 * 119.99970 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99992 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00025 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47118 * 89.99595 * 23 21 19 25 25 H 1.48499 * 109.47134 * 210.00115 * 23 21 19 26 26 H 1.48507 * 109.46904 * 329.99938 * 23 21 19 27 27 C 1.46906 * 110.59157 * 301.55836 * 14 13 12 28 28 H 1.08999 * 109.53833 * 298.96212 * 27 14 13 29 29 C 1.46944 * 120.55428 * 179.97438 * 6 4 3 30 30 H 1.09000 * 109.46672 * 60.00154 * 1 2 3 31 31 H 1.08990 * 109.46925 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.46958 * 300.00215 * 1 2 3 33 33 H 1.08994 * 109.47223 * 240.00087 * 2 1 3 34 34 H 1.08995 * 109.47241 * 119.99414 * 2 1 3 35 35 H 1.08998 * 109.47401 * 59.99696 * 3 2 1 36 36 H 1.09001 * 109.46950 * 300.00008 * 3 2 1 37 37 H 1.08995 * 109.56415 * 7.00996 * 7 6 4 38 38 H 1.09009 * 109.64705 * 246.74079 * 7 6 4 39 39 H 1.08999 * 109.52018 * 294.47972 * 8 7 6 40 40 H 1.08997 * 109.57816 * 174.31225 * 8 7 6 41 41 H 1.08999 * 109.48464 * 61.47364 * 12 11 9 42 42 H 1.08993 * 109.48111 * 181.50993 * 12 11 9 43 43 H 1.09002 * 109.48730 * 296.55128 * 13 12 11 44 44 H 1.08995 * 109.48486 * 176.50078 * 13 12 11 45 45 H 1.09000 * 109.47263 * 173.43006 * 15 14 13 46 46 H 1.09001 * 109.47582 * 53.42285 * 15 14 13 47 47 H 0.96999 * 120.00043 * 0.02562 * 18 16 15 48 48 H 0.97005 * 120.00019 * 180.02562 * 22 21 19 49 49 H 1.09001 * 109.58709 * 113.78085 * 29 6 4 50 50 H 1.08997 * 109.63208 * 353.23457 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3923 0.0015 6 7 4.2210 2.6097 0.0002 7 6 3.4989 3.8890 -0.0003 8 6 4.0114 4.7500 1.1593 9 6 5.5319 4.8809 1.0530 10 1 5.7923 5.3223 0.0910 11 8 6.0235 5.7113 2.1070 12 6 7.4459 5.8660 2.0974 13 6 8.1078 4.4906 2.2107 14 7 7.6315 3.6279 1.1189 15 6 8.2833 2.3122 1.1649 16 6 9.7525 2.4690 0.8680 17 8 10.2104 3.5679 0.6356 18 7 10.5567 1.3875 0.8557 19 6 11.8931 1.5301 0.5851 20 1 12.3015 2.5090 0.3822 21 6 12.7221 0.4150 0.5720 22 7 12.2250 -0.7763 0.8184 23 14 14.5432 0.6092 0.2040 24 1 15.2829 0.8359 1.4715 25 1 15.0499 -0.6232 -0.4514 26 1 14.7443 1.7696 -0.7008 27 6 6.1694 3.4929 1.1675 28 1 5.8769 3.0343 2.1120 29 6 5.6903 2.6239 0.0014 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 1.6767 1.9565 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 2.4318 3.7058 0.1251 38 1 3.6718 4.4071 -0.9437 39 1 3.7517 4.2771 2.1065 40 1 3.5561 5.7390 1.1089 41 1 7.7536 6.3418 1.1662 42 1 7.7498 6.4864 2.9404 43 1 7.8490 4.0403 3.1691 44 1 9.1899 4.6010 2.1411 45 1 7.8304 1.6562 0.4215 46 1 8.1575 1.8787 2.1570 47 1 10.1898 0.5082 1.0376 48 1 12.8038 -1.5547 0.8096 49 1 6.0525 3.0408 -0.9384 50 1 6.0663 1.6082 0.1235 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176882102.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:44 Heat of formation + Delta-G solvation = -133.872975 kcal Electronic energy + Delta-G solvation = -30902.927922 eV Core-core repulsion = 26736.046063 eV Total energy + Delta-G solvation = -4166.881859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.87314 -40.64901 -39.84409 -37.57764 -36.90754 -35.85672 -35.32129 -33.34299 -33.17752 -31.79321 -30.52279 -29.08490 -27.47877 -26.43825 -25.61855 -24.00101 -23.16686 -22.39654 -21.41398 -21.02631 -20.00532 -19.90779 -18.53304 -17.77720 -17.53107 -17.02938 -17.01840 -16.90826 -16.60244 -16.34732 -15.88069 -15.76916 -15.62990 -15.39393 -15.07825 -14.85250 -14.66773 -14.34519 -14.10691 -13.86959 -13.77627 -13.52132 -13.45395 -13.21721 -12.99658 -12.85247 -12.65865 -12.56173 -12.46193 -12.41967 -12.26845 -12.13717 -12.00193 -11.84001 -11.60642 -11.53012 -11.41900 -10.86312 -10.74548 -10.28076 -10.05001 -9.79112 -9.46718 -8.49474 -5.99081 1.35491 1.39287 1.52719 1.58668 1.82263 1.97402 2.24514 2.55063 2.68891 3.15581 3.24519 3.41857 3.63930 3.69548 3.82632 3.95612 4.00062 4.03431 4.07955 4.13566 4.17420 4.24129 4.26897 4.37371 4.38843 4.45495 4.52610 4.62349 4.65530 4.68832 4.73422 4.74869 4.79681 4.84306 4.90416 4.93211 5.01279 5.20102 5.27315 5.30184 5.34221 5.37857 5.50007 5.68799 5.88007 5.99356 6.13190 6.35858 6.54584 7.07949 7.13606 7.49894 8.04189 8.68114 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012009 B = 0.002909 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2330.933897 B = 9621.573137 C =11663.816798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.504 3.496 5 O -0.592 6.592 6 N -0.612 5.612 7 C 0.106 3.894 8 C -0.118 4.118 9 C 0.097 3.903 10 H 0.070 0.930 11 O -0.386 6.386 12 C 0.076 3.924 13 C 0.018 3.982 14 N -0.517 5.517 15 C 0.054 3.946 16 C 0.445 3.555 17 O -0.608 6.608 18 N -0.573 5.573 19 C -0.331 4.331 20 H 0.083 0.917 21 C -0.016 4.016 22 N -0.923 5.923 23 Si 0.996 3.004 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.048 3.952 28 H 0.039 0.961 29 C 0.121 3.879 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.132 0.868 38 H 0.092 0.908 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.058 0.942 42 H 0.120 0.880 43 H 0.033 0.967 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.058 0.942 47 H 0.394 0.606 48 H 0.278 0.722 49 H 0.078 0.922 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.268 9.377 0.122 27.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.295 3.705 5 O -0.472 6.472 6 N -0.345 5.345 7 C -0.015 4.015 8 C -0.157 4.157 9 C 0.039 3.961 10 H 0.088 0.912 11 O -0.305 6.305 12 C -0.001 4.001 13 C -0.110 4.110 14 N -0.242 5.242 15 C -0.077 4.077 16 C 0.232 3.768 17 O -0.494 6.494 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.195 1.195 27 C -0.062 4.062 28 H 0.057 0.943 29 C -0.003 4.003 30 H 0.087 0.913 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.140 0.860 36 H 0.143 0.857 37 H 0.150 0.850 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.134 0.866 41 H 0.076 0.924 42 H 0.138 0.862 43 H 0.051 0.949 44 H 0.101 0.899 45 H 0.120 0.880 46 H 0.076 0.924 47 H 0.227 0.773 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -25.567 9.689 -0.341 27.343 hybrid contribution 1.565 -1.475 0.660 2.249 sum -24.002 8.214 0.318 25.370 Atomic orbital electron populations 1.21744 0.93237 1.02313 1.03005 1.21287 0.97042 0.95104 1.01699 1.21828 0.87869 1.00159 1.06961 1.21718 0.92250 0.82303 0.74277 1.90711 1.71766 1.32939 1.51790 1.48290 1.05608 1.07551 1.73081 1.22122 0.98433 0.81759 0.99162 1.21938 0.90930 1.02868 0.99921 1.22281 0.95424 0.87240 0.91191 0.91246 1.87917 1.21642 1.69011 1.51949 1.22635 0.79663 0.94447 1.03339 1.22891 1.02020 0.95002 0.91063 1.61833 1.04165 1.11610 1.46584 1.21780 0.92084 0.92121 1.01759 1.20452 0.88633 0.84608 0.83074 1.90444 1.77202 1.26558 1.55155 1.41955 1.08205 1.08661 1.62216 1.19688 0.84302 0.95314 1.46770 0.89887 1.26122 1.04830 0.94040 0.96525 1.69696 1.38381 0.99058 1.49215 0.84883 0.76552 0.77965 0.78665 1.19495 1.19633 1.19522 1.22634 0.87270 0.98441 0.97828 0.94262 1.21382 0.80846 1.00101 0.97929 0.91259 0.92740 0.91399 0.93243 0.93447 0.85959 0.85696 0.84994 0.88957 0.90900 0.86569 0.92388 0.86232 0.94882 0.89913 0.88003 0.92428 0.77307 0.91285 0.90382 0.91052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.91 71.98 0.71 -0.63 16 2 C -0.11 -1.73 5.22 30.60 0.16 -1.57 16 3 C -0.13 -1.50 4.05 29.85 0.12 -1.38 16 4 C 0.50 11.24 7.70 87.66 0.67 11.91 16 5 O -0.59 -19.80 15.39 -3.02 -0.05 -19.85 16 6 N -0.61 -12.04 2.98 -818.97 -2.44 -14.48 16 7 C 0.11 1.05 6.33 86.39 0.55 1.60 16 8 C -0.12 -1.52 5.76 30.67 0.18 -1.35 16 9 C 0.10 2.12 2.62 30.65 0.08 2.20 16 10 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 11 O -0.39 -9.65 10.50 -148.98 -1.56 -11.21 16 12 C 0.08 2.01 7.00 72.00 0.50 2.52 16 13 C 0.02 0.61 5.29 86.29 0.46 1.06 16 14 N -0.52 -17.85 4.28 -874.33 -3.74 -21.59 16 15 C 0.05 2.08 5.23 85.56 0.45 2.53 16 16 C 0.45 22.07 7.49 87.66 0.66 22.73 16 17 O -0.61 -33.58 13.95 -3.05 -0.04 -33.63 16 18 N -0.57 -30.75 5.29 -306.98 -1.62 -32.38 16 19 C -0.33 -19.22 9.68 84.04 0.81 -18.40 16 20 H 0.08 5.06 7.16 -2.91 -0.02 5.04 16 21 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 22 N -0.92 -51.59 13.05 21.66 0.28 -51.31 16 23 Si 1.00 43.80 29.55 68.60 2.03 45.83 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 27 C 0.05 1.32 1.97 45.01 0.09 1.40 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 C 0.12 3.24 5.27 86.33 0.45 3.70 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 33 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 34 H 0.05 0.92 8.10 -2.39 -0.02 0.90 16 35 H 0.12 0.77 7.68 -2.39 -0.02 0.75 16 36 H 0.13 0.72 7.95 -2.39 -0.02 0.70 16 37 H 0.13 0.34 5.92 -2.39 -0.01 0.33 16 38 H 0.09 0.70 8.14 -2.38 -0.02 0.69 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.12 0.96 8.14 -2.39 -0.02 0.95 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.12 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 3.35 5.91 -2.39 -0.01 3.33 16 45 H 0.10 3.78 5.90 -2.39 -0.01 3.76 16 46 H 0.06 2.13 8.12 -2.39 -0.02 2.11 16 47 H 0.39 20.54 7.90 -92.71 -0.73 19.80 16 48 H 0.28 14.52 8.31 -92.70 -0.77 13.75 16 49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 50 H 0.07 2.32 5.37 -2.39 -0.01 2.31 16 Total: -1.00 -76.86 389.44 -0.57 -77.43 By element: Atomic # 1 Polarization: 35.03 SS G_CDS: 0.21 Total: 35.25 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 6.36 Total: 25.94 kcal Atomic # 7 Polarization: -112.23 SS G_CDS: -7.52 Total: -119.75 kcal Atomic # 8 Polarization: -63.03 SS G_CDS: -1.65 Total: -64.68 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Total: -76.86 -0.57 -77.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176882102.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.447 kcal (2) G-P(sol) polarization free energy of solvation -76.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds