Wall clock time and date at job start Tue Mar 31 2020 23:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46930 * 2 1 4 4 C 1.50702 * 109.46872 * 179.97438 * 3 2 1 5 5 O 1.21279 * 120.00224 * 0.02562 * 4 3 2 6 6 N 1.34779 * 119.99754 * 179.97438 * 4 3 2 7 7 C 1.46953 * 120.68884 * 359.97438 * 6 4 3 8 8 C 1.53174 * 108.61116 * 125.91989 * 7 6 4 9 9 C 1.52764 * 109.57109 * 54.55783 * 8 7 6 10 10 H 1.09004 * 109.31219 * 179.27499 * 9 8 7 11 11 O 1.42886 * 110.02641 * 59.81726 * 9 8 7 12 12 C 1.43084 * 113.55197 * 179.83852 * 11 9 8 13 13 C 1.53068 * 109.35800 * 58.26893 * 12 11 9 14 14 N 1.47026 * 109.43632 * 303.57546 * 13 12 11 15 15 C 1.46907 * 110.99851 * 182.35766 * 14 13 12 16 16 C 1.50692 * 109.46967 * 170.35095 * 15 14 13 17 17 O 1.21294 * 120.00294 * 353.83362 * 16 15 14 18 18 N 1.34778 * 119.99694 * 173.83158 * 16 15 14 19 19 C 1.37109 * 119.99996 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00242 * 179.97438 * 19 18 16 22 22 N 1.31412 * 120.00188 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 119.99941 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47250 * 270.00274 * 23 21 19 25 25 H 1.48493 * 109.47208 * 149.99788 * 23 21 19 26 26 H 1.48505 * 109.46843 * 29.99910 * 23 21 19 27 27 C 1.47267 * 110.50031 * 58.76277 * 14 13 12 28 28 H 1.09002 * 109.72714 * 179.71727 * 27 14 13 29 29 C 1.46861 * 120.68364 * 180.02562 * 6 4 3 30 30 H 1.09006 * 109.47027 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47914 * 300.00190 * 1 2 3 32 32 H 1.09005 * 109.46780 * 60.00835 * 1 2 3 33 33 H 1.09000 * 109.47443 * 239.99562 * 2 1 3 34 34 H 1.09009 * 109.46548 * 119.99882 * 2 1 3 35 35 H 1.09000 * 109.47415 * 59.99545 * 3 2 1 36 36 H 1.08995 * 109.47254 * 299.99171 * 3 2 1 37 37 H 1.08996 * 109.61309 * 245.66251 * 7 6 4 38 38 H 1.09006 * 109.61054 * 6.18216 * 7 6 4 39 39 H 1.09000 * 109.45257 * 174.58946 * 8 7 6 40 40 H 1.09002 * 109.45090 * 294.54784 * 8 7 6 41 41 H 1.09000 * 109.49117 * 178.23586 * 12 11 9 42 42 H 1.08996 * 109.48764 * 298.30730 * 12 11 9 43 43 H 1.09000 * 109.47442 * 183.58538 * 13 12 11 44 44 H 1.08994 * 109.47541 * 63.56943 * 13 12 11 45 45 H 1.09006 * 109.46797 * 50.35089 * 15 14 13 46 46 H 1.09001 * 109.46714 * 290.35455 * 15 14 13 47 47 H 0.96993 * 120.00543 * 359.97438 * 18 16 15 48 48 H 0.96993 * 119.99758 * 179.97438 * 22 21 19 49 49 H 1.08994 * 109.55624 * 114.14377 * 29 6 4 50 50 H 1.09003 * 109.55343 * 353.83170 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1534 0.3922 0.0006 6 7 4.2208 2.6097 0.0002 7 6 3.5014 3.8911 -0.0014 8 6 4.0036 4.7352 1.1739 9 6 5.5234 4.8686 1.0955 10 1 5.8749 5.4805 1.9263 11 8 5.8968 5.4983 -0.1315 12 6 7.3099 5.6648 -0.2819 13 6 7.9933 4.2975 -0.2011 14 7 7.6367 3.6466 1.0682 15 6 8.3198 2.3534 1.2067 16 6 8.1228 1.8286 2.6055 17 8 7.5740 2.5170 3.4399 18 7 8.5563 0.5943 2.9294 19 6 8.3766 0.1165 4.2019 20 1 7.8879 0.7295 4.9448 21 6 8.8230 -1.1562 4.5357 22 7 8.6512 -1.6139 5.7555 23 14 9.6688 -2.2162 3.2510 24 1 8.6541 -3.0301 2.5347 25 1 10.6453 -3.1156 3.9161 26 1 10.3794 -1.3451 2.2805 27 6 6.1766 3.4861 1.1731 28 1 5.9269 2.9984 2.1154 29 6 5.6893 2.6273 0.0003 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8901 35 1 1.6765 1.9564 0.8899 36 1 1.6767 1.9563 -0.8900 37 1 3.6919 4.4165 -0.9372 38 1 2.4320 3.7104 0.1085 39 1 3.5496 5.7252 1.1300 40 1 3.7298 4.2514 2.1115 41 1 7.5215 6.1205 -1.2492 42 1 7.6870 6.3074 0.5136 43 1 9.0743 4.4280 -0.2515 44 1 7.6629 3.6763 -1.0335 45 1 9.3849 2.4826 1.0138 46 1 7.9042 1.6445 0.4906 47 1 8.9948 0.0436 2.2621 48 1 8.9625 -2.5025 5.9884 49 1 6.0491 3.0514 -0.9371 50 1 6.0663 1.6105 0.1110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176882103.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:48 Heat of formation + Delta-G solvation = -126.298932 kcal Electronic energy + Delta-G solvation = -31840.881305 eV Core-core repulsion = 27674.327881 eV Total energy + Delta-G solvation = -4166.553424 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 3.50 seconds Orbital eigenvalues (eV) -42.09973 -40.62171 -39.94685 -37.23309 -36.95030 -35.93097 -35.36469 -33.80767 -33.19909 -31.47842 -30.65794 -29.12015 -27.53179 -26.24760 -25.58529 -24.78191 -23.03488 -22.68322 -21.34594 -20.75517 -20.18724 -19.73084 -18.34723 -17.99775 -17.43410 -17.23352 -17.05726 -17.01943 -16.68190 -16.34255 -16.19127 -15.67167 -15.29089 -15.17970 -15.04530 -14.80468 -14.72184 -14.31478 -14.23622 -14.13494 -13.96705 -13.70275 -13.52017 -13.22392 -12.97933 -12.91112 -12.79105 -12.67520 -12.47930 -12.31184 -12.25182 -12.03441 -12.01672 -11.77795 -11.66093 -11.55590 -11.34018 -10.92137 -10.71379 -10.38472 -10.27703 -9.99660 -9.14241 -8.46786 -6.06857 1.22859 1.29609 1.36828 1.56520 1.87541 1.91635 2.16807 2.46812 2.76272 3.04491 3.09611 3.45026 3.66805 3.77403 3.85012 3.95176 3.96221 4.00739 4.04066 4.08252 4.10147 4.22114 4.28791 4.31529 4.42905 4.49518 4.53696 4.60829 4.64696 4.68143 4.73069 4.74808 4.79439 4.86572 4.91268 4.97113 5.01220 5.19539 5.22121 5.25422 5.34781 5.45090 5.47528 5.74881 5.88718 5.97445 6.17378 6.36911 6.53630 6.82097 7.12474 7.33263 7.89244 8.70859 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.008447 B = 0.004450 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3314.050163 B = 6290.394759 C = 8674.507963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.128 4.128 4 C 0.498 3.502 5 O -0.596 6.596 6 N -0.609 5.609 7 C 0.110 3.890 8 C -0.125 4.125 9 C 0.108 3.892 10 H 0.054 0.946 11 O -0.377 6.377 12 C 0.065 3.935 13 C 0.008 3.992 14 N -0.521 5.521 15 C 0.049 3.951 16 C 0.452 3.548 17 O -0.603 6.603 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.057 0.943 21 C -0.011 4.011 22 N -0.931 5.931 23 Si 0.958 3.042 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.232 1.232 27 C 0.046 3.954 28 H 0.064 0.936 29 C 0.091 3.909 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.053 0.947 34 H 0.038 0.962 35 H 0.115 0.885 36 H 0.129 0.871 37 H 0.093 0.907 38 H 0.121 0.879 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.132 0.868 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.053 0.947 45 H 0.128 0.872 46 H 0.066 0.934 47 H 0.387 0.613 48 H 0.280 0.720 49 H 0.087 0.913 50 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 13.733 -21.221 27.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.167 4.167 4 C 0.288 3.712 5 O -0.477 6.477 6 N -0.342 5.342 7 C -0.011 4.011 8 C -0.163 4.163 9 C 0.050 3.950 10 H 0.072 0.928 11 O -0.296 6.296 12 C -0.011 4.011 13 C -0.119 4.119 14 N -0.245 5.245 15 C -0.082 4.082 16 C 0.239 3.761 17 O -0.487 6.487 18 N -0.234 5.234 19 C -0.455 4.455 20 H 0.075 0.925 21 C -0.210 4.210 22 N -0.572 5.572 23 Si 0.778 3.222 24 H -0.190 1.190 25 H -0.192 1.192 26 H -0.155 1.155 27 C -0.064 4.064 28 H 0.082 0.918 29 C -0.034 4.034 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.133 0.867 36 H 0.147 0.853 37 H 0.111 0.889 38 H 0.139 0.861 39 H 0.136 0.864 40 H 0.091 0.909 41 H 0.150 0.850 42 H 0.074 0.926 43 H 0.126 0.874 44 H 0.071 0.929 45 H 0.145 0.855 46 H 0.084 0.916 47 H 0.222 0.778 48 H 0.089 0.911 49 H 0.105 0.895 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.213 13.887 -20.257 26.999 hybrid contribution 1.003 -1.928 0.042 2.173 sum -10.210 11.960 -20.215 25.611 Atomic orbital electron populations 1.21737 0.92922 1.02413 1.03049 1.21285 0.97306 0.95020 1.01505 1.21803 0.88041 1.00158 1.06712 1.21755 0.92368 0.82517 0.74542 1.90696 1.71816 1.33050 1.52100 1.48219 1.05976 1.07316 1.72653 1.22014 0.97745 0.81783 0.99529 1.21933 0.91961 1.02970 0.99457 1.21841 0.95796 0.90093 0.87301 0.92834 1.87897 1.23570 1.79621 1.38528 1.22826 0.79902 0.94579 1.03804 1.23079 1.02997 0.96716 0.89120 1.62196 1.06063 1.21066 1.35221 1.21902 1.02329 0.91520 0.92469 1.20766 0.82339 0.81721 0.91241 1.90510 1.46891 1.58415 1.52842 1.42065 1.54965 1.15219 1.11182 1.18984 1.38203 1.00458 0.87892 0.92491 1.26026 0.98001 0.97810 0.99151 1.69785 1.47437 1.19358 1.20615 0.85459 0.79031 0.79035 0.78645 1.19039 1.19216 1.15485 1.22700 0.87962 0.97735 0.97961 0.91754 1.22059 0.81601 1.00146 0.99561 0.92573 0.91718 0.90780 0.92813 0.94272 0.86725 0.85330 0.88925 0.86149 0.86393 0.90906 0.84994 0.92567 0.87391 0.92905 0.85464 0.91606 0.77841 0.91084 0.89487 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 9.91 71.98 0.71 -1.30 16 2 C -0.11 -2.40 5.22 30.59 0.16 -2.24 16 3 C -0.13 -2.31 4.05 29.85 0.12 -2.19 16 4 C 0.50 14.49 7.70 87.66 0.67 15.17 16 5 O -0.60 -24.08 15.40 -3.03 -0.05 -24.13 16 6 N -0.61 -15.64 2.97 -818.78 -2.43 -18.06 16 7 C 0.11 1.77 6.14 86.35 0.53 2.30 16 8 C -0.12 -2.32 5.83 30.57 0.18 -2.14 16 9 C 0.11 2.72 2.87 30.55 0.09 2.81 16 10 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 11 O -0.38 -7.90 9.43 -148.98 -1.41 -9.31 16 12 C 0.07 1.16 7.01 72.00 0.50 1.66 16 13 C 0.01 0.16 5.22 86.30 0.45 0.61 16 14 N -0.52 -16.19 4.38 -873.30 -3.83 -20.02 16 15 C 0.05 1.65 5.26 85.55 0.45 2.10 16 16 C 0.45 21.83 7.34 87.65 0.64 22.47 16 17 O -0.60 -34.58 14.27 -3.07 -0.04 -34.62 16 18 N -0.59 -30.17 5.09 -306.98 -1.56 -31.73 16 19 C -0.33 -20.09 10.16 84.04 0.85 -19.24 16 20 H 0.06 4.12 7.39 -2.91 -0.02 4.10 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.93 -58.16 13.96 21.66 0.30 -57.86 16 23 Si 0.96 41.65 27.74 68.60 1.90 43.55 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 26 H -0.23 -8.58 6.52 99.48 0.65 -7.93 16 27 C 0.05 1.50 2.20 44.98 0.10 1.60 16 28 H 0.06 2.82 6.11 -2.39 -0.01 2.80 16 29 C 0.09 2.73 4.75 86.42 0.41 3.14 16 30 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 34 H 0.04 1.06 8.10 -2.38 -0.02 1.04 16 35 H 0.11 1.62 7.71 -2.39 -0.02 1.60 16 36 H 0.13 1.38 7.94 -2.39 -0.02 1.37 16 37 H 0.09 1.28 7.87 -2.39 -0.02 1.26 16 38 H 0.12 1.12 5.94 -2.38 -0.01 1.10 16 39 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.11 1.79 8.09 -2.39 -0.02 1.77 16 44 H 0.05 1.03 6.12 -2.39 -0.01 1.01 16 45 H 0.13 3.47 8.04 -2.38 -0.02 3.45 16 46 H 0.07 2.09 6.23 -2.39 -0.01 2.08 16 47 H 0.39 16.80 5.76 -92.71 -0.53 16.27 16 48 H 0.28 15.95 8.31 -92.71 -0.77 15.18 16 49 H 0.09 2.26 5.71 -2.39 -0.01 2.24 16 50 H 0.05 2.04 5.56 -2.39 -0.01 2.03 16 Total: -1.00 -88.48 381.23 -0.41 -88.89 By element: Atomic # 1 Polarization: 38.36 SS G_CDS: 0.36 Total: 38.72 kcal Atomic # 6 Polarization: 18.23 SS G_CDS: 6.34 Total: 24.58 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -7.52 Total: -127.67 kcal Atomic # 8 Polarization: -66.57 SS G_CDS: -1.50 Total: -68.06 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.90 Total: 43.55 kcal Total: -88.48 -0.41 -88.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176882103.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.413 kcal (2) G-P(sol) polarization free energy of solvation -88.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.50 seconds