Wall clock time and date at job start Tue Mar 31 2020 23:09:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.50707 * 109.46697 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00303 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99701 * 179.97438 * 4 3 2 7 7 C 1.46947 * 120.68508 * 359.97438 * 6 4 3 8 8 C 1.53174 * 108.61528 * 234.07103 * 7 6 4 9 9 C 1.52771 * 109.55865 * 305.46927 * 8 7 6 10 10 H 1.08997 * 109.31182 * 180.70259 * 9 8 7 11 11 O 1.42892 * 110.02591 * 300.16266 * 9 8 7 12 12 C 1.43084 * 113.54505 * 180.16035 * 11 9 8 13 13 C 1.53066 * 109.36444 * 301.73223 * 12 11 9 14 14 N 1.47030 * 109.40286 * 56.46963 * 13 12 11 15 15 C 1.46896 * 110.96729 * 177.62759 * 14 13 12 16 16 C 1.50699 * 109.47128 * 293.26008 * 15 14 13 17 17 O 1.21297 * 119.99681 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00076 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99951 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00495 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99914 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00065 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00174 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46828 * 89.99855 * 23 21 19 25 25 H 1.48497 * 109.46927 * 210.00039 * 23 21 19 26 26 H 1.48499 * 109.47127 * 330.00249 * 23 21 19 27 27 C 1.47264 * 110.47582 * 301.18447 * 14 13 12 28 28 H 1.08999 * 109.72880 * 180.33846 * 27 14 13 29 29 C 1.46862 * 120.68490 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.47037 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47253 * 300.00821 * 1 2 3 32 32 H 1.09002 * 109.46690 * 60.00149 * 1 2 3 33 33 H 1.08997 * 109.47253 * 239.99179 * 2 1 3 34 34 H 1.09007 * 109.46718 * 119.99393 * 2 1 3 35 35 H 1.08994 * 109.47526 * 59.99954 * 3 2 1 36 36 H 1.09000 * 109.46711 * 299.98996 * 3 2 1 37 37 H 1.09001 * 109.61801 * 114.33471 * 7 6 4 38 38 H 1.09002 * 109.61796 * 353.80308 * 7 6 4 39 39 H 1.09002 * 109.45454 * 65.48970 * 8 7 6 40 40 H 1.09000 * 109.45544 * 185.44918 * 8 7 6 41 41 H 1.09010 * 109.48713 * 61.69843 * 12 11 9 42 42 H 1.09001 * 109.48821 * 181.75880 * 12 11 9 43 43 H 1.08998 * 109.47561 * 176.41445 * 13 12 11 44 44 H 1.09006 * 109.47208 * 296.43234 * 13 12 11 45 45 H 1.09000 * 109.47104 * 53.25717 * 15 14 13 46 46 H 1.08995 * 109.47280 * 173.25702 * 15 14 13 47 47 H 0.97005 * 120.00358 * 359.97438 * 18 16 15 48 48 H 0.96994 * 120.00291 * 179.97438 * 22 21 19 49 49 H 1.08995 * 109.55439 * 245.85408 * 29 6 4 50 50 H 1.09002 * 109.55405 * 6.05393 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3921 0.0015 6 7 4.2210 2.6097 0.0002 7 6 3.5015 3.8910 -0.0014 8 6 4.0058 4.7334 -1.1771 9 6 5.5256 4.8662 -1.0964 10 1 5.8787 5.4765 -1.9276 11 8 5.8971 5.4979 0.1302 12 6 7.3101 5.6639 0.2826 13 6 7.9930 4.2963 0.2051 14 7 7.6387 3.6445 -1.0643 15 6 8.3217 2.3511 -1.1997 16 6 9.8057 2.5781 -1.3319 17 8 10.2503 3.7065 -1.3154 18 7 10.6386 1.5275 -1.4685 19 6 11.9886 1.7340 -1.5882 20 1 12.3848 2.7386 -1.5727 21 6 12.8473 0.6507 -1.7295 22 7 14.1414 0.8487 -1.8448 23 14 12.1624 -1.0870 -1.7557 24 1 11.8455 -1.4731 -3.1542 25 1 13.1705 -2.0248 -1.1994 26 1 10.9265 -1.1443 -0.9343 27 6 6.1787 3.4840 -1.1710 28 1 5.9302 2.9948 -2.1128 29 6 5.6895 2.6272 0.0014 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8901 37 1 3.6905 4.4180 0.9338 38 1 2.4324 3.7102 -0.1130 39 1 3.7330 4.2485 -2.1145 40 1 3.5521 5.7236 -1.1352 41 1 7.6888 6.3052 -0.5134 42 1 7.5203 6.1213 1.2494 43 1 9.0740 4.4264 0.2571 44 1 7.6610 3.6766 1.0382 45 1 8.1246 1.7419 -0.3176 46 1 7.9525 1.8363 -2.0867 47 1 10.2830 0.6250 -1.4813 48 1 14.7408 0.0925 -1.9431 49 1 6.0485 3.0525 0.9386 50 1 6.0666 1.6102 -0.1058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176882104.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:56 Heat of formation + Delta-G solvation = -99.081524 kcal Electronic energy + Delta-G solvation = -31177.777361 eV Core-core repulsion = 27012.404172 eV Total energy + Delta-G solvation = -4165.373188 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.09324 -39.54372 -38.31946 -36.31549 -35.72765 -34.70730 -33.91075 -32.34658 -31.68970 -30.54902 -29.36564 -28.36085 -26.05959 -25.32786 -24.16618 -23.60146 -22.23158 -21.92929 -19.78236 -19.37072 -18.83973 -18.27715 -17.45631 -16.64256 -16.34484 -16.29784 -16.04867 -15.65774 -15.40679 -15.01377 -14.89418 -14.48754 -14.31160 -14.02734 -13.81830 -13.68082 -13.43083 -13.21386 -13.03695 -12.94758 -12.80865 -12.54040 -12.32484 -12.11106 -12.07253 -11.92614 -11.63839 -11.59713 -11.42874 -11.21429 -11.07198 -10.99468 -10.95451 -10.58578 -10.40338 -9.98873 -9.97695 -9.67007 -9.53390 -9.10737 -8.53025 -8.19151 -7.96147 -6.32096 -3.83534 2.43119 2.71635 3.04446 3.08604 3.16361 3.62381 3.69741 3.73686 4.10437 4.19743 4.48503 4.50657 4.58056 4.63443 4.66712 4.74350 4.84198 4.99696 5.01454 5.08673 5.12768 5.15637 5.18300 5.23692 5.25224 5.31926 5.37346 5.46166 5.51593 5.57457 5.64019 5.67732 5.70437 5.70997 5.77104 5.81663 5.84425 5.90927 5.98981 6.08180 6.18785 6.23107 6.98631 7.02790 7.16373 7.19908 7.56784 7.97850 8.12728 8.58571 8.93654 9.41256 9.81013 10.80776 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003122 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.486020 B = 8967.861826 C =10984.576921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.111 4.111 3 C -0.138 4.138 4 C 0.511 3.489 5 O -0.541 6.541 6 N -0.608 5.608 7 C 0.110 3.890 8 C -0.125 4.125 9 C 0.101 3.899 10 H 0.071 0.929 11 O -0.383 6.383 12 C 0.069 3.931 13 C 0.007 3.993 14 N -0.499 5.499 15 C 0.039 3.961 16 C 0.453 3.547 17 O -0.561 6.561 18 N -0.589 5.589 19 C -0.305 4.305 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.880 5.880 23 Si 0.878 3.122 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.041 3.959 28 H 0.095 0.905 29 C 0.081 3.919 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.088 0.912 41 H 0.063 0.937 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.037 0.963 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.371 0.629 48 H 0.274 0.726 49 H 0.076 0.924 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.328 4.290 3.950 28.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.178 4.178 4 C 0.299 3.701 5 O -0.418 6.418 6 N -0.342 5.342 7 C -0.013 4.013 8 C -0.164 4.164 9 C 0.043 3.957 10 H 0.089 0.911 11 O -0.302 6.302 12 C -0.008 4.008 13 C -0.120 4.120 14 N -0.223 5.223 15 C -0.092 4.092 16 C 0.239 3.761 17 O -0.443 6.443 18 N -0.228 5.228 19 C -0.433 4.433 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.520 5.520 23 Si 0.704 3.296 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.195 1.195 27 C -0.069 4.069 28 H 0.113 0.887 29 C -0.043 4.043 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.110 0.890 36 H 0.111 0.889 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.101 0.899 40 H 0.106 0.894 41 H 0.081 0.919 42 H 0.115 0.885 43 H 0.133 0.867 44 H 0.055 0.945 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.203 0.797 48 H 0.084 0.916 49 H 0.094 0.906 50 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.422 4.771 3.685 28.076 hybrid contribution -0.272 -2.060 0.393 2.115 sum -27.694 2.711 4.078 28.123 Atomic orbital electron populations 1.21791 0.95458 1.02003 1.01717 1.21300 0.95233 0.94696 1.03652 1.21743 0.91762 1.00161 1.04149 1.20819 0.90405 0.83103 0.75742 1.90710 1.70416 1.30940 1.49742 1.48090 1.06681 1.06034 1.73439 1.21722 0.96166 0.83758 0.99631 1.21885 0.94005 1.01298 0.99193 1.21892 0.93893 0.91891 0.88073 0.91138 1.87893 1.23518 1.79855 1.38933 1.22668 0.79737 0.96123 1.02270 1.23048 1.04281 0.95237 0.89441 1.62249 1.03753 1.21401 1.34862 1.21964 0.94822 0.90584 1.01875 1.19545 0.86738 0.85666 0.84157 1.90518 1.77265 1.22412 1.54129 1.42215 1.07721 1.06744 1.66139 1.19414 0.79266 0.97293 1.47339 0.86230 1.25036 0.95201 0.98309 0.97534 1.69619 1.01956 1.31839 1.48607 0.86694 0.79145 0.84743 0.78987 1.19547 1.20130 1.19451 1.22821 0.88724 0.96505 0.98883 0.88681 1.22339 0.79682 1.02257 1.00048 0.92387 0.92716 0.92680 0.91200 0.91258 0.88981 0.88907 0.90293 0.89608 0.89925 0.89383 0.91884 0.88507 0.86657 0.94457 0.92950 0.89017 0.79652 0.91589 0.90604 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.91 37.16 0.37 -0.49 16 2 C -0.11 -0.88 5.22 -26.73 -0.14 -1.02 16 3 C -0.14 -1.00 4.05 -27.88 -0.11 -1.11 16 4 C 0.51 5.82 7.70 -10.98 -0.08 5.73 16 5 O -0.54 -8.47 15.40 5.56 0.09 -8.39 16 6 N -0.61 -6.38 2.97 -172.79 -0.51 -6.90 16 7 C 0.11 0.81 6.14 -3.71 -0.02 0.79 16 8 C -0.13 -0.93 5.83 -26.76 -0.16 -1.08 16 9 C 0.10 1.09 2.87 -26.82 -0.08 1.02 16 10 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 11 O -0.38 -4.56 9.44 -35.23 -0.33 -4.89 16 12 C 0.07 0.87 7.01 37.19 0.26 1.13 16 13 C 0.01 0.11 4.86 -3.72 -0.02 0.10 16 14 N -0.50 -7.85 4.42 -227.47 -1.01 -8.86 16 15 C 0.04 0.67 4.85 -4.98 -0.02 0.64 16 16 C 0.45 10.24 7.49 -10.99 -0.08 10.16 16 17 O -0.56 -14.59 13.96 5.54 0.08 -14.52 16 18 N -0.59 -14.14 5.09 -10.96 -0.06 -14.20 16 19 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 21 C 0.04 1.17 5.50 -17.46 -0.10 1.07 16 22 N -0.88 -25.79 13.96 55.50 0.77 -25.02 16 23 Si 0.88 19.73 27.74 -169.99 -4.71 15.01 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.27 -5.59 6.52 56.52 0.37 -5.23 16 27 C 0.04 0.51 2.53 -67.37 -0.17 0.34 16 28 H 0.10 1.19 8.07 -51.93 -0.42 0.77 16 29 C 0.08 1.02 4.74 -3.73 -0.02 1.01 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.07 0.64 8.10 -51.92 -0.42 0.22 16 35 H 0.09 0.50 7.94 -51.93 -0.41 0.09 16 36 H 0.09 0.49 7.70 -51.93 -0.40 0.09 16 37 H 0.08 0.63 7.87 -51.93 -0.41 0.22 16 38 H 0.09 0.40 5.94 -51.93 -0.31 0.09 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.12 2.13 5.91 -51.93 -0.31 1.82 16 44 H 0.04 0.54 6.12 -51.93 -0.32 0.23 16 45 H 0.05 0.84 7.04 -51.93 -0.37 0.48 16 46 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 47 H 0.37 7.96 5.76 -40.82 -0.24 7.73 16 48 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 49 H 0.08 1.02 5.70 -51.93 -0.30 0.72 16 50 H 0.09 1.35 5.94 -51.93 -0.31 1.04 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -34.14 381.60 -8.43 -42.57 By element: Atomic # 1 Polarization: 17.88 SS G_CDS: -7.97 Total: 9.90 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: -0.52 Total: 9.53 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.80 Total: -54.97 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.17 Total: -27.79 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -4.71 Total: 15.01 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.14 -8.43 -42.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176882104.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.509 kcal (2) G-P(sol) polarization free energy of solvation -34.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds