Wall clock time and date at job start Tue Mar 31 2020 23:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46997 * 2 1 4 4 C 1.50707 * 109.46697 * 179.97438 * 3 2 1 5 5 O 1.21276 * 120.00303 * 359.97438 * 4 3 2 6 6 N 1.34782 * 119.99701 * 179.97438 * 4 3 2 7 7 C 1.46947 * 120.68508 * 359.97438 * 6 4 3 8 8 C 1.53174 * 108.61528 * 234.07103 * 7 6 4 9 9 C 1.52771 * 109.55865 * 305.46927 * 8 7 6 10 10 H 1.08997 * 109.31182 * 180.70259 * 9 8 7 11 11 O 1.42892 * 110.02591 * 300.16266 * 9 8 7 12 12 C 1.43084 * 113.54505 * 180.16035 * 11 9 8 13 13 C 1.53066 * 109.36444 * 301.73223 * 12 11 9 14 14 N 1.47030 * 109.40286 * 56.46963 * 13 12 11 15 15 C 1.46896 * 110.96729 * 177.62759 * 14 13 12 16 16 C 1.50699 * 109.47128 * 293.26008 * 15 14 13 17 17 O 1.21297 * 119.99681 * 359.97438 * 16 15 14 18 18 N 1.34771 * 120.00076 * 179.97438 * 16 15 14 19 19 C 1.37096 * 119.99951 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00495 * 0.02562 * 19 18 16 21 21 C 1.38954 * 119.99914 * 180.02562 * 19 18 16 22 22 N 1.31417 * 120.00065 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00174 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46828 * 89.99855 * 23 21 19 25 25 H 1.48497 * 109.46927 * 210.00039 * 23 21 19 26 26 H 1.48499 * 109.47127 * 330.00249 * 23 21 19 27 27 C 1.47264 * 110.47582 * 301.18447 * 14 13 12 28 28 H 1.08999 * 109.72880 * 180.33846 * 27 14 13 29 29 C 1.46862 * 120.68490 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.47037 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47253 * 300.00821 * 1 2 3 32 32 H 1.09002 * 109.46690 * 60.00149 * 1 2 3 33 33 H 1.08997 * 109.47253 * 239.99179 * 2 1 3 34 34 H 1.09007 * 109.46718 * 119.99393 * 2 1 3 35 35 H 1.08994 * 109.47526 * 59.99954 * 3 2 1 36 36 H 1.09000 * 109.46711 * 299.98996 * 3 2 1 37 37 H 1.09001 * 109.61801 * 114.33471 * 7 6 4 38 38 H 1.09002 * 109.61796 * 353.80308 * 7 6 4 39 39 H 1.09002 * 109.45454 * 65.48970 * 8 7 6 40 40 H 1.09000 * 109.45544 * 185.44918 * 8 7 6 41 41 H 1.09010 * 109.48713 * 61.69843 * 12 11 9 42 42 H 1.09001 * 109.48821 * 181.75880 * 12 11 9 43 43 H 1.08998 * 109.47561 * 176.41445 * 13 12 11 44 44 H 1.09006 * 109.47208 * 296.43234 * 13 12 11 45 45 H 1.09000 * 109.47104 * 53.25717 * 15 14 13 46 46 H 1.08995 * 109.47280 * 173.25702 * 15 14 13 47 47 H 0.97005 * 120.00358 * 359.97438 * 18 16 15 48 48 H 0.96994 * 120.00291 * 179.97438 * 22 21 19 49 49 H 1.08995 * 109.55439 * 245.85408 * 29 6 4 50 50 H 1.09002 * 109.55405 * 6.05393 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 0.0006 5 8 4.1535 0.3921 0.0015 6 7 4.2210 2.6097 0.0002 7 6 3.5015 3.8910 -0.0014 8 6 4.0058 4.7334 -1.1771 9 6 5.5256 4.8662 -1.0964 10 1 5.8787 5.4765 -1.9276 11 8 5.8971 5.4979 0.1302 12 6 7.3101 5.6639 0.2826 13 6 7.9930 4.2963 0.2051 14 7 7.6387 3.6445 -1.0643 15 6 8.3217 2.3511 -1.1997 16 6 9.8057 2.5781 -1.3319 17 8 10.2503 3.7065 -1.3154 18 7 10.6386 1.5275 -1.4685 19 6 11.9886 1.7340 -1.5882 20 1 12.3848 2.7386 -1.5727 21 6 12.8473 0.6507 -1.7295 22 7 14.1414 0.8487 -1.8448 23 14 12.1624 -1.0870 -1.7557 24 1 11.8455 -1.4731 -3.1542 25 1 13.1705 -2.0248 -1.1994 26 1 10.9265 -1.1443 -0.9343 27 6 6.1787 3.4840 -1.1710 28 1 5.9302 2.9948 -2.1128 29 6 5.6895 2.6272 0.0014 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6768 1.9562 -0.8901 37 1 3.6905 4.4180 0.9338 38 1 2.4324 3.7102 -0.1130 39 1 3.7330 4.2485 -2.1145 40 1 3.5521 5.7236 -1.1352 41 1 7.6888 6.3052 -0.5134 42 1 7.5203 6.1213 1.2494 43 1 9.0740 4.4264 0.2571 44 1 7.6610 3.6766 1.0382 45 1 8.1246 1.7419 -0.3176 46 1 7.9525 1.8363 -2.0867 47 1 10.2830 0.6250 -1.4813 48 1 14.7408 0.0925 -1.9431 49 1 6.0485 3.0525 0.9386 50 1 6.0666 1.6102 -0.1058 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176882104.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:55 Heat of formation + Delta-G solvation = -125.850990 kcal Electronic energy + Delta-G solvation = -31178.938172 eV Core-core repulsion = 27012.404172 eV Total energy + Delta-G solvation = -4166.534000 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.07021 -40.63891 -39.95556 -37.19900 -36.97085 -35.91729 -35.30893 -33.79930 -33.19768 -31.44013 -30.65902 -29.11192 -27.50363 -26.22909 -25.59556 -24.74467 -23.06958 -22.67182 -21.31256 -20.68581 -20.22416 -19.68544 -18.36803 -17.82497 -17.56880 -17.17008 -17.08117 -16.90098 -16.66777 -16.33515 -16.12382 -15.65632 -15.52981 -15.13501 -14.93354 -14.78999 -14.71993 -14.39843 -14.19082 -14.15511 -13.77813 -13.71353 -13.52640 -13.29516 -13.03036 -12.83062 -12.68531 -12.65487 -12.46193 -12.33127 -12.16201 -12.03074 -11.99538 -11.77370 -11.60878 -11.55745 -11.35919 -10.87781 -10.74991 -10.36770 -10.27378 -9.97424 -9.16896 -8.45199 -6.05426 1.26992 1.30347 1.39087 1.61305 1.86669 1.92444 2.17995 2.43418 2.74103 3.05310 3.11685 3.46899 3.66870 3.77892 3.85183 3.88428 4.00221 4.04010 4.08032 4.12038 4.13925 4.19227 4.24615 4.31567 4.42383 4.52429 4.54061 4.62495 4.69273 4.69564 4.73190 4.77223 4.82913 4.90291 4.92360 4.96649 5.04669 5.22218 5.26703 5.29790 5.37440 5.47974 5.50131 5.72895 5.88643 5.95209 6.15886 6.41146 6.54477 6.83324 7.15802 7.34260 7.89375 8.72070 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012090 B = 0.003122 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.486020 B = 8967.861826 C =10984.576921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.129 4.129 4 C 0.503 3.497 5 O -0.594 6.594 6 N -0.606 5.606 7 C 0.106 3.894 8 C -0.118 4.118 9 C 0.097 3.903 10 H 0.065 0.935 11 O -0.378 6.378 12 C 0.076 3.924 13 C 0.011 3.989 14 N -0.516 5.516 15 C 0.052 3.948 16 C 0.455 3.545 17 O -0.599 6.599 18 N -0.592 5.592 19 C -0.325 4.325 20 H 0.060 0.940 21 C -0.011 4.011 22 N -0.930 5.930 23 Si 0.959 3.041 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.240 1.240 27 C 0.046 3.954 28 H 0.099 0.901 29 C 0.088 3.912 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.047 0.953 35 H 0.118 0.882 36 H 0.123 0.877 37 H 0.077 0.923 38 H 0.124 0.876 39 H 0.097 0.903 40 H 0.112 0.888 41 H 0.053 0.947 42 H 0.116 0.884 43 H 0.076 0.924 44 H 0.043 0.957 45 H 0.068 0.932 46 H 0.114 0.886 47 H 0.387 0.613 48 H 0.280 0.720 49 H 0.066 0.934 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.075 3.745 3.963 33.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.150 4.150 3 C -0.169 4.169 4 C 0.294 3.706 5 O -0.474 6.474 6 N -0.339 5.339 7 C -0.015 4.015 8 C -0.156 4.156 9 C 0.038 3.962 10 H 0.083 0.917 11 O -0.297 6.297 12 C 0.000 4.000 13 C -0.117 4.117 14 N -0.240 5.240 15 C -0.079 4.079 16 C 0.243 3.757 17 O -0.483 6.483 18 N -0.234 5.234 19 C -0.454 4.454 20 H 0.078 0.922 21 C -0.210 4.210 22 N -0.571 5.571 23 Si 0.779 3.221 24 H -0.181 1.181 25 H -0.197 1.197 26 H -0.163 1.163 27 C -0.063 4.063 28 H 0.117 0.883 29 C -0.037 4.037 30 H 0.073 0.927 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.095 0.905 38 H 0.142 0.858 39 H 0.116 0.884 40 H 0.130 0.870 41 H 0.071 0.929 42 H 0.134 0.866 43 H 0.094 0.906 44 H 0.061 0.939 45 H 0.086 0.914 46 H 0.132 0.868 47 H 0.222 0.778 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -32.221 4.270 3.702 32.713 hybrid contribution 1.229 -1.741 0.395 2.167 sum -30.993 2.529 4.097 31.364 Atomic orbital electron populations 1.21749 0.93382 1.02302 1.02942 1.21275 0.96925 0.95060 1.01720 1.21809 0.88214 1.00100 1.06744 1.21649 0.92125 0.82362 0.74451 1.90689 1.71729 1.32854 1.52151 1.48206 1.05673 1.07286 1.72710 1.22006 0.97922 0.82016 0.99528 1.21934 0.90880 1.02874 0.99931 1.22111 0.96377 0.90254 0.87430 0.91744 1.87908 1.22459 1.79796 1.39564 1.22582 0.80171 0.94247 1.03045 1.22931 1.02164 0.96987 0.89595 1.62222 1.05936 1.20585 1.35254 1.21831 0.90524 0.92003 1.03570 1.20611 0.88956 0.84675 0.81506 1.90507 1.78693 1.24153 1.54967 1.42067 1.06245 1.08001 1.67053 1.18995 0.81664 0.95330 1.49411 0.92155 1.26020 0.95177 1.03662 0.96149 1.69784 1.03840 1.33899 1.49581 0.85447 0.79457 0.77069 0.80106 1.18078 1.19709 1.16332 1.22892 0.86427 0.98009 0.99013 0.88261 1.22051 0.81630 1.00627 0.99388 0.92696 0.91508 0.91330 0.93153 0.93394 0.86348 0.85864 0.90509 0.85766 0.88431 0.87006 0.92878 0.86561 0.90580 0.93925 0.91425 0.86769 0.77786 0.91079 0.91624 0.91281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 71.98 0.71 -0.49 16 2 C -0.11 -1.55 5.22 30.60 0.16 -1.39 16 3 C -0.13 -1.38 4.05 29.85 0.12 -1.25 16 4 C 0.50 10.37 7.70 87.66 0.67 11.04 16 5 O -0.59 -18.34 15.40 -3.02 -0.05 -18.39 16 6 N -0.61 -11.08 2.97 -818.97 -2.43 -13.51 16 7 C 0.11 1.09 6.14 86.35 0.53 1.62 16 8 C -0.12 -1.24 5.83 30.58 0.18 -1.06 16 9 C 0.10 1.86 2.87 30.54 0.09 1.94 16 10 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 11 O -0.38 -8.22 9.44 -148.98 -1.41 -9.62 16 12 C 0.08 1.90 7.01 72.00 0.50 2.40 16 13 C 0.01 0.34 4.86 86.30 0.42 0.76 16 14 N -0.52 -16.15 4.42 -873.59 -3.86 -20.02 16 15 C 0.05 1.77 4.85 85.56 0.41 2.18 16 16 C 0.46 21.18 7.49 87.66 0.66 21.84 16 17 O -0.60 -32.97 13.96 -3.08 -0.04 -33.01 16 18 N -0.59 -28.99 5.09 -306.98 -1.56 -30.56 16 19 C -0.32 -19.30 10.16 84.04 0.85 -18.45 16 20 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 21 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 22 N -0.93 -56.64 13.96 21.66 0.30 -56.34 16 23 Si 0.96 40.43 27.74 68.60 1.90 42.33 16 24 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 25 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 26 H -0.24 -8.88 6.52 99.48 0.65 -8.23 16 27 C 0.05 1.09 2.53 44.94 0.11 1.20 16 28 H 0.10 2.28 8.07 -2.39 -0.02 2.26 16 29 C 0.09 2.12 4.74 86.39 0.41 2.53 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 34 H 0.05 0.85 8.10 -2.38 -0.02 0.83 16 35 H 0.12 0.70 7.94 -2.39 -0.02 0.68 16 36 H 0.12 0.62 7.70 -2.39 -0.02 0.60 16 37 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 38 H 0.12 0.37 5.94 -2.39 -0.01 0.36 16 39 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.08 2.98 5.91 -2.39 -0.01 2.97 16 44 H 0.04 1.26 6.12 -2.38 -0.01 1.24 16 45 H 0.07 2.13 7.04 -2.39 -0.02 2.11 16 46 H 0.11 3.39 8.03 -2.39 -0.02 3.38 16 47 H 0.39 16.23 5.76 -92.70 -0.53 15.69 16 48 H 0.28 15.57 8.31 -92.71 -0.77 14.80 16 49 H 0.07 1.71 5.70 -2.39 -0.01 1.69 16 50 H 0.07 1.99 5.94 -2.39 -0.01 1.98 16 Total: -1.00 -81.91 381.60 -0.48 -82.39 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.36 Total: 34.00 kcal Atomic # 6 Polarization: 16.42 SS G_CDS: 6.31 Total: 22.72 kcal Atomic # 7 Polarization: -112.87 SS G_CDS: -7.55 Total: -120.42 kcal Atomic # 8 Polarization: -59.53 SS G_CDS: -1.50 Total: -61.02 kcal Atomic # 14 Polarization: 40.43 SS G_CDS: 1.90 Total: 42.33 kcal Total: -81.91 -0.48 -82.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176882104.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.458 kcal (2) G-P(sol) polarization free energy of solvation -81.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds