Wall clock time and date at job start Tue Mar 31 2020 23:09:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47219 * 2 1 4 4 C 1.50699 * 109.47209 * 180.02562 * 3 2 1 5 5 O 1.21275 * 120.00089 * 0.02562 * 4 3 2 6 6 N 1.34770 * 119.99982 * 179.97438 * 4 3 2 7 7 C 1.46902 * 120.55938 * 0.02562 * 6 4 3 8 8 C 1.53239 * 108.94328 * 233.10383 * 7 6 4 9 9 C 1.52996 * 109.13968 * 305.61827 * 8 7 6 10 10 H 1.08993 * 109.48015 * 301.82284 * 9 8 7 11 11 O 1.42904 * 109.88297 * 181.55399 * 9 8 7 12 12 C 1.43070 * 113.57677 * 181.16926 * 11 9 8 13 13 C 1.53074 * 109.40711 * 58.49553 * 12 11 9 14 14 N 1.47072 * 109.38952 * 303.47303 * 13 12 11 15 15 C 1.46893 * 111.00079 * 182.11057 * 14 13 12 16 16 C 1.50708 * 109.47146 * 66.04492 * 15 14 13 17 17 O 1.21288 * 119.99815 * 359.97438 * 16 15 14 18 18 N 1.34774 * 119.99719 * 180.02562 * 16 15 14 19 19 C 1.37101 * 119.99349 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00515 * 359.97438 * 19 18 16 21 21 C 1.38955 * 119.99490 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00236 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99845 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00316 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00267 * 23 21 19 26 26 H 1.48504 * 109.46913 * 150.00066 * 23 21 19 27 27 C 1.46903 * 110.59502 * 58.44554 * 14 13 12 28 28 H 1.08994 * 109.53082 * 61.04145 * 27 14 13 29 29 C 1.46989 * 120.55987 * 179.97438 * 6 4 3 30 30 H 1.08996 * 109.47000 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46611 * 299.99562 * 1 2 3 32 32 H 1.08997 * 109.47204 * 59.99919 * 1 2 3 33 33 H 1.09006 * 109.46832 * 240.00044 * 2 1 3 34 34 H 1.09003 * 109.47421 * 120.00470 * 2 1 3 35 35 H 1.09004 * 109.46770 * 59.99930 * 3 2 1 36 36 H 1.09003 * 109.47307 * 300.00539 * 3 2 1 37 37 H 1.09004 * 109.55408 * 113.26541 * 7 6 4 38 38 H 1.09000 * 109.64393 * 352.99907 * 7 6 4 39 39 H 1.09002 * 109.52449 * 185.72232 * 8 7 6 40 40 H 1.08999 * 109.58385 * 65.55070 * 8 7 6 41 41 H 1.09004 * 109.48014 * 298.52439 * 12 11 9 42 42 H 1.08996 * 109.48800 * 178.48081 * 12 11 9 43 43 H 1.08998 * 109.48735 * 183.49220 * 13 12 11 44 44 H 1.09009 * 109.48006 * 63.44636 * 13 12 11 45 45 H 1.09002 * 109.47091 * 306.04662 * 15 14 13 46 46 H 1.09000 * 109.47343 * 186.04280 * 15 14 13 47 47 H 0.96996 * 120.00564 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99781 * 179.97438 * 22 21 19 49 49 H 1.09006 * 109.62590 * 246.25729 * 29 6 4 50 50 H 1.09005 * 109.62572 * 6.62121 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5471 1.4425 -0.0006 5 8 4.1534 0.3922 -0.0015 6 7 4.2209 2.6096 -0.0013 7 6 3.4989 3.8889 -0.0008 8 6 4.0112 4.7498 -1.1604 9 6 5.5318 4.8807 -1.0542 10 1 5.7923 5.3223 -0.0923 11 8 6.0229 5.7112 -2.1084 12 6 7.4452 5.8660 -2.0996 13 6 8.1073 4.4905 -2.2131 14 7 7.6316 3.6280 -1.1209 15 6 8.2838 2.3126 -1.1667 16 6 9.7555 2.4714 -0.8833 17 8 10.2157 3.5721 -0.6651 18 7 10.5602 1.3903 -0.8733 19 6 11.8989 1.5347 -0.6149 20 1 12.3086 2.5147 -0.4198 21 6 12.7285 0.4201 -0.6041 22 7 12.2299 -0.7725 -0.8410 23 14 14.5526 0.6169 -0.2528 24 1 15.2812 0.8383 -1.5277 25 1 14.7610 1.7812 0.6451 26 1 15.0657 -0.6125 0.4036 27 6 6.1696 3.4928 -1.1685 28 1 5.8767 3.0338 -2.1128 29 6 5.6907 2.6240 -0.0013 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3633 0.5138 -0.8899 33 1 1.8934 -0.5139 -0.8901 34 1 1.8935 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9564 -0.8899 37 1 3.6736 4.4061 0.9427 38 1 2.4313 3.7072 -0.1250 39 1 3.5559 5.7388 -1.1088 40 1 3.7515 4.2781 -2.1081 41 1 7.7533 6.3419 -1.1686 42 1 7.7487 6.4862 -2.9430 43 1 9.1894 4.6010 -2.1442 44 1 7.8479 4.0401 -3.1713 45 1 8.1495 1.8747 -2.1558 46 1 7.8378 1.6596 -0.4166 47 1 10.1922 0.5100 -1.0481 48 1 12.8092 -1.5505 -0.8338 49 1 6.0528 3.0414 0.9383 50 1 6.0668 1.6077 -0.1192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176882105.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:58 Heat of formation + Delta-G solvation = -133.844996 kcal Electronic energy + Delta-G solvation = -30901.571988 eV Core-core repulsion = 26734.691343 eV Total energy + Delta-G solvation = -4166.880646 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.86950 -40.65082 -39.84464 -37.57500 -36.90669 -35.85671 -35.32078 -33.34509 -33.17515 -31.78783 -30.52230 -29.08412 -27.47775 -26.43742 -25.61783 -24.00088 -23.16654 -22.39573 -21.41409 -21.02837 -20.00527 -19.90747 -18.53187 -17.77728 -17.52745 -17.02771 -17.01660 -16.90859 -16.60454 -16.34757 -15.88186 -15.77083 -15.62801 -15.39548 -15.08005 -14.85136 -14.66919 -14.34236 -14.10628 -13.86482 -13.77548 -13.52241 -13.45153 -13.21766 -12.99765 -12.85219 -12.65875 -12.56079 -12.46285 -12.41958 -12.26872 -12.13665 -12.00211 -11.84026 -11.60597 -11.53084 -11.41739 -10.86203 -10.74654 -10.27567 -10.04995 -9.79058 -9.46680 -8.49524 -5.99161 1.35471 1.39297 1.52731 1.58751 1.82261 1.97264 2.24486 2.55149 2.68980 3.15472 3.24470 3.41903 3.63914 3.69500 3.82777 3.95713 4.00123 4.03489 4.08077 4.13540 4.17507 4.24204 4.26985 4.37398 4.38865 4.45506 4.52661 4.62325 4.65560 4.68930 4.73458 4.74897 4.79741 4.84626 4.90514 4.93432 5.01324 5.20192 5.27289 5.30172 5.34165 5.37874 5.49990 5.68892 5.88116 5.99392 6.13369 6.35959 6.54489 7.07857 7.13670 7.49790 8.04031 8.68060 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012038 B = 0.002906 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.353511 B = 9633.735347 C =11673.532328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.113 4.113 3 C -0.129 4.129 4 C 0.504 3.496 5 O -0.592 6.592 6 N -0.612 5.612 7 C 0.106 3.894 8 C -0.118 4.118 9 C 0.097 3.903 10 H 0.070 0.930 11 O -0.387 6.387 12 C 0.076 3.924 13 C 0.017 3.983 14 N -0.516 5.516 15 C 0.054 3.946 16 C 0.445 3.555 17 O -0.608 6.608 18 N -0.573 5.573 19 C -0.331 4.331 20 H 0.083 0.917 21 C -0.016 4.016 22 N -0.923 5.923 23 Si 0.996 3.004 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.048 3.952 28 H 0.039 0.961 29 C 0.121 3.879 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.125 0.875 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.116 0.884 40 H 0.072 0.928 41 H 0.058 0.942 42 H 0.120 0.880 43 H 0.084 0.916 44 H 0.032 0.968 45 H 0.058 0.942 46 H 0.102 0.898 47 H 0.394 0.606 48 H 0.278 0.722 49 H 0.078 0.922 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.271 9.360 0.001 27.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.151 4.151 3 C -0.168 4.168 4 C 0.295 3.705 5 O -0.472 6.472 6 N -0.345 5.345 7 C -0.015 4.015 8 C -0.157 4.157 9 C 0.039 3.961 10 H 0.088 0.912 11 O -0.305 6.305 12 C -0.001 4.001 13 C -0.110 4.110 14 N -0.242 5.242 15 C -0.077 4.077 16 C 0.232 3.768 17 O -0.494 6.494 18 N -0.210 5.210 19 C -0.461 4.461 20 H 0.101 0.899 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.195 1.195 26 H -0.196 1.196 27 C -0.062 4.062 28 H 0.057 0.943 29 C -0.003 4.003 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.134 0.866 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.137 0.863 43 H 0.102 0.898 44 H 0.051 0.949 45 H 0.075 0.925 46 H 0.120 0.880 47 H 0.227 0.773 48 H 0.087 0.913 49 H 0.096 0.904 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -25.569 9.673 0.455 27.341 hybrid contribution 1.561 -1.476 -0.663 2.249 sum -24.008 8.197 -0.208 25.369 Atomic orbital electron populations 1.21744 0.93238 1.02313 1.03003 1.21288 0.97041 0.95107 1.01699 1.21827 0.87874 1.00156 1.06959 1.21715 0.92249 0.82305 0.74280 1.90711 1.71763 1.32944 1.51797 1.48301 1.05614 1.07549 1.73077 1.22121 0.98451 0.81748 0.99149 1.21938 0.90930 1.02870 0.99920 1.22284 0.95423 0.87238 0.91187 0.91235 1.87914 1.21653 1.69012 1.51953 1.22635 0.79659 0.94454 1.03331 1.22906 1.02116 0.94988 0.91031 1.61828 1.04176 1.11622 1.46562 1.21777 0.92044 0.92115 1.01795 1.20449 0.88668 0.84625 0.83029 1.90441 1.77215 1.26382 1.55318 1.41955 1.08019 1.08617 1.62427 1.19689 0.84089 0.95261 1.47036 0.89875 1.26123 1.04861 0.94041 0.96491 1.69696 1.38350 0.99013 1.49288 0.84883 0.76541 0.77970 0.78671 1.19500 1.19515 1.19635 1.22643 0.87266 0.98431 0.97815 0.94283 1.21400 0.80822 1.00112 0.97921 0.92740 0.91265 0.91395 0.93451 0.93240 0.85695 0.85964 0.88972 0.84976 0.86578 0.90897 0.92382 0.86251 0.89811 0.94940 0.92453 0.87999 0.77303 0.91283 0.90373 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 71.98 0.71 -0.63 16 2 C -0.11 -1.73 5.22 30.60 0.16 -1.57 16 3 C -0.13 -1.50 4.04 29.85 0.12 -1.38 16 4 C 0.50 11.23 7.70 87.66 0.67 11.91 16 5 O -0.59 -19.79 15.39 -3.01 -0.05 -19.84 16 6 N -0.61 -12.03 2.97 -818.73 -2.44 -14.46 16 7 C 0.11 1.05 6.33 86.38 0.55 1.60 16 8 C -0.12 -1.52 5.76 30.67 0.18 -1.35 16 9 C 0.10 2.12 2.62 30.65 0.08 2.20 16 10 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 11 O -0.39 -9.67 10.50 -148.98 -1.56 -11.23 16 12 C 0.08 2.02 7.00 72.01 0.50 2.52 16 13 C 0.02 0.59 5.28 86.30 0.46 1.04 16 14 N -0.52 -17.85 4.29 -874.19 -3.75 -21.60 16 15 C 0.05 2.09 5.23 85.56 0.45 2.54 16 16 C 0.45 22.06 7.49 87.66 0.66 22.71 16 17 O -0.61 -33.54 13.90 -3.05 -0.04 -33.58 16 18 N -0.57 -30.73 5.29 -306.98 -1.62 -32.35 16 19 C -0.33 -19.21 9.68 84.04 0.81 -18.39 16 20 H 0.08 5.06 7.16 -2.92 -0.02 5.04 16 21 C -0.02 -0.85 5.50 84.93 0.47 -0.39 16 22 N -0.92 -51.58 13.05 21.66 0.28 -51.29 16 23 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 24 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 25 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 C 0.05 1.32 1.97 45.04 0.09 1.41 16 28 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 29 C 0.12 3.24 5.27 86.35 0.46 3.69 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.05 0.92 8.10 -2.38 -0.02 0.90 16 34 H 0.05 0.94 8.10 -2.39 -0.02 0.93 16 35 H 0.13 0.72 7.95 -2.38 -0.02 0.70 16 36 H 0.12 0.77 7.68 -2.39 -0.02 0.75 16 37 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 38 H 0.13 0.34 5.93 -2.39 -0.01 0.33 16 39 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.08 3.40 5.85 -2.39 -0.01 3.39 16 44 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 45 H 0.06 2.13 8.12 -2.39 -0.02 2.11 16 46 H 0.10 3.78 5.93 -2.39 -0.01 3.76 16 47 H 0.39 20.53 7.90 -92.71 -0.73 19.80 16 48 H 0.28 14.52 8.31 -92.71 -0.77 13.75 16 49 H 0.08 2.11 8.14 -2.38 -0.02 2.10 16 50 H 0.07 2.32 5.39 -2.38 -0.01 2.31 16 Total: -1.00 -76.78 389.39 -0.58 -77.36 By element: Atomic # 1 Polarization: 35.07 SS G_CDS: 0.21 Total: 35.28 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 6.36 Total: 25.92 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -7.53 Total: -119.71 kcal Atomic # 8 Polarization: -63.00 SS G_CDS: -1.65 Total: -64.65 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -76.78 -0.58 -77.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176882105.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.489 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds