Wall clock time and date at job start Tue Mar 31 2020 23:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47693 * 2 1 4 4 C 1.50706 * 109.47165 * 239.99558 * 2 1 3 5 5 O 1.21282 * 119.99569 * 94.97530 * 4 2 1 6 6 N 1.34769 * 120.00193 * 274.97703 * 4 2 1 7 7 C 1.46900 * 120.56216 * 184.99529 * 6 4 2 8 8 C 1.53248 * 108.93477 * 126.83031 * 7 6 4 9 9 C 1.52992 * 109.13553 * 54.39496 * 8 7 6 10 10 H 1.09002 * 109.47803 * 58.16202 * 9 8 7 11 11 O 1.42901 * 109.88186 * 178.42200 * 9 8 7 12 12 C 1.43084 * 113.56467 * 178.84107 * 11 9 8 13 13 C 1.53059 * 109.40821 * 301.50295 * 12 11 9 14 14 N 1.47068 * 109.39889 * 56.51570 * 13 12 11 15 15 C 1.46904 * 111.00279 * 177.90223 * 14 13 12 16 16 C 1.50695 * 109.46983 * 293.95584 * 15 14 13 17 17 O 1.21292 * 120.00078 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00244 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99936 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00424 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99310 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00488 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99737 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47288 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47178 * 119.99643 * 23 21 19 26 26 H 1.48497 * 109.47317 * 239.99749 * 23 21 19 27 27 C 1.46913 * 110.61168 * 301.57749 * 14 13 12 28 28 H 1.08999 * 109.51439 * 298.93448 * 27 14 13 29 29 C 1.46998 * 120.56144 * 4.72028 * 6 4 2 30 30 H 1.08995 * 109.47482 * 183.67598 * 1 2 3 31 31 H 1.09000 * 109.47321 * 303.68512 * 1 2 3 32 32 H 1.09004 * 109.46751 * 63.67713 * 1 2 3 33 33 H 1.09005 * 109.46605 * 119.99993 * 2 1 3 34 34 H 1.09000 * 109.46738 * 299.99980 * 3 2 1 35 35 H 1.08999 * 109.46997 * 59.99692 * 3 2 1 36 36 H 1.08992 * 109.47052 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.56629 * 246.67461 * 7 6 4 38 38 H 1.09005 * 109.55684 * 7.00155 * 7 6 4 39 39 H 1.08997 * 109.52729 * 174.29065 * 8 7 6 40 40 H 1.08999 * 109.52568 * 294.49881 * 8 7 6 41 41 H 1.09002 * 109.47527 * 61.47978 * 12 11 9 42 42 H 1.08992 * 109.48390 * 181.50305 * 12 11 9 43 43 H 1.09002 * 109.48608 * 176.49418 * 13 12 11 44 44 H 1.08999 * 109.48492 * 296.52522 * 13 12 11 45 45 H 1.09000 * 109.47060 * 53.95336 * 15 14 13 46 46 H 1.09003 * 109.47273 * 173.95686 * 15 14 13 47 47 H 0.97002 * 119.99564 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00187 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.61844 * 353.24144 * 29 6 4 50 50 H 1.08996 * 109.62234 * 113.79307 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3203 -0.0750 -2.2225 6 7 2.1615 -2.0520 -1.2284 7 6 2.7519 -2.7473 -2.3800 8 6 3.8945 -3.6422 -1.8882 9 6 3.3688 -4.5690 -0.7903 10 1 2.5438 -5.1644 -1.1816 11 8 4.4134 -5.4367 -0.3453 12 6 4.0127 -6.3230 0.7041 13 6 3.5155 -5.5051 1.8985 14 7 2.4228 -4.6215 1.4646 15 6 1.8849 -3.8547 2.5962 16 6 1.2211 -4.7944 3.5695 17 8 1.1980 -5.9856 3.3426 18 7 0.6522 -4.3110 4.6917 19 6 0.0479 -5.1658 5.5768 20 1 0.0273 -6.2265 5.3748 21 6 -0.5390 -4.6673 6.7334 22 7 -0.5144 -3.3766 6.9790 23 14 -1.3631 -5.8320 7.9392 24 1 -1.2557 -7.2245 7.4346 25 1 -0.6938 -5.7311 9.2610 26 1 -2.7954 -5.4663 8.0805 27 6 2.8762 -3.7273 0.3907 28 1 3.6902 -3.1018 0.7571 29 6 1.7196 -2.8437 -0.0714 30 1 -0.3634 -1.0255 0.0659 31 1 -0.3634 0.5700 0.8551 32 1 -0.3633 0.4557 -0.9212 33 1 1.8932 -0.5139 0.8901 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.1300 1.4423 -0.0005 37 1 1.9919 -3.3594 -2.8656 38 1 3.1405 -2.0154 -3.0881 39 1 4.2731 -4.2388 -2.7181 40 1 4.6967 -3.0220 -1.4882 41 1 3.2110 -6.9697 0.3473 42 1 4.8629 -6.9328 1.0094 43 1 3.1519 -6.1788 2.6744 44 1 4.3343 -4.9038 2.2935 45 1 2.6970 -3.3274 3.0966 46 1 1.1536 -3.1333 2.2314 47 1 0.6704 -3.3582 4.8729 48 1 -0.9239 -3.0287 7.7866 49 1 1.4249 -2.1758 0.7380 50 1 0.8753 -3.4707 -0.3579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176912505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:03 Heat of formation + Delta-G solvation = -105.299400 kcal Electronic energy + Delta-G solvation = -31570.388315 eV Core-core repulsion = 27404.745499 eV Total energy + Delta-G solvation = -4165.642816 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.96459 -39.61037 -38.19129 -36.60364 -35.59650 -34.71586 -33.90752 -32.20643 -31.34275 -30.73016 -29.04259 -27.35898 -26.39895 -25.59471 -24.45938 -23.28089 -22.80630 -21.25686 -20.34325 -19.28357 -18.99407 -17.95337 -17.79820 -16.42299 -16.34480 -16.07345 -15.78345 -15.60389 -15.08951 -14.77661 -14.75801 -14.40273 -14.22958 -14.06089 -13.99934 -13.63206 -13.40950 -13.28261 -13.05166 -12.67614 -12.52069 -12.44817 -12.24844 -12.10028 -12.07970 -11.70397 -11.54937 -11.45254 -11.35545 -11.25011 -11.13262 -11.04283 -10.87251 -10.45330 -10.39534 -10.29404 -9.83161 -9.59303 -9.53793 -8.90791 -8.56681 -8.10418 -8.00685 -6.49115 -3.90103 2.44216 2.68983 3.11057 3.22723 3.29116 3.62027 3.71377 3.80027 4.13583 4.28880 4.36566 4.60791 4.65200 4.79193 4.80953 4.87796 4.90684 5.01336 5.07513 5.16129 5.16976 5.24922 5.32616 5.39770 5.42759 5.45525 5.52311 5.54771 5.56429 5.60881 5.63669 5.68773 5.74424 5.74853 5.77200 5.93390 5.98214 6.02921 6.08550 6.15411 6.20654 6.27937 7.01493 7.04875 7.15394 7.21975 7.48590 7.97712 7.98402 8.52854 9.10486 9.45494 9.96412 10.68427 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.003459 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.415322 B = 8093.605924 C =10191.695054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.118 4.118 3 C -0.134 4.134 4 C 0.524 3.476 5 O -0.542 6.542 6 N -0.612 5.612 7 C 0.114 3.886 8 C -0.125 4.125 9 C 0.101 3.899 10 H 0.070 0.930 11 O -0.385 6.385 12 C 0.067 3.933 13 C 0.017 3.983 14 N -0.504 5.504 15 C 0.040 3.960 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.561 5.561 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.024 3.976 22 N -0.900 5.900 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.039 3.961 28 H 0.052 0.948 29 C 0.110 3.890 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.093 0.907 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.033 0.967 45 H 0.050 0.950 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.095 0.905 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.243 5.164 -14.208 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.140 4.140 3 C -0.191 4.191 4 C 0.313 3.687 5 O -0.419 6.419 6 N -0.346 5.346 7 C -0.009 4.009 8 C -0.164 4.164 9 C 0.043 3.957 10 H 0.088 0.912 11 O -0.304 6.304 12 C -0.010 4.010 13 C -0.110 4.110 14 N -0.230 5.230 15 C -0.091 4.091 16 C 0.228 3.772 17 O -0.462 6.462 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.541 5.541 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.071 4.071 28 H 0.070 0.930 29 C -0.013 4.013 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.111 0.889 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.106 0.894 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.135 0.865 44 H 0.051 0.949 45 H 0.068 0.932 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.113 0.887 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.101 4.510 -14.992 16.802 hybrid contribution -0.022 0.476 1.495 1.569 sum 6.079 4.986 -13.497 15.620 Atomic orbital electron populations 1.21786 0.92221 1.02984 1.03194 1.21362 0.98225 0.97968 0.96400 1.21644 1.01213 0.93632 1.02633 1.20744 0.76889 0.81350 0.89750 1.90665 1.50562 1.65492 1.35213 1.48165 1.61953 1.06236 1.18216 1.21587 0.95105 0.95698 0.88476 1.21912 0.98580 0.97487 0.98393 1.22045 0.90355 0.90672 0.92637 0.91233 1.87929 1.36777 1.51316 1.54354 1.22683 1.00186 0.91551 0.86534 1.22967 0.91653 0.97209 0.99211 1.61839 1.33092 1.19299 1.08721 1.21975 0.99212 0.95961 0.91980 1.19620 0.84925 0.89102 0.83527 1.90484 1.63072 1.16124 1.76486 1.41865 1.49432 1.10264 1.18213 1.19742 1.31307 0.92433 0.99415 0.87803 1.25257 0.97847 0.96420 0.98273 1.69611 1.45172 1.11831 1.27515 0.85813 0.78652 0.80254 0.79719 1.19195 1.20743 1.20705 1.22533 0.96568 0.94224 0.93811 0.93040 1.21833 0.96779 0.94437 0.88249 0.91867 0.90877 0.91928 0.88879 0.91512 0.91653 0.92494 0.91016 0.88330 0.89396 0.90757 0.91959 0.88522 0.86455 0.94896 0.93213 0.89207 0.77512 0.91855 0.88740 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.30 9.01 37.16 0.33 -0.97 16 2 C -0.12 -1.18 2.39 -91.77 -0.22 -1.40 16 3 C -0.13 -1.27 8.73 37.16 0.32 -0.94 16 4 C 0.52 6.36 6.80 -10.99 -0.07 6.28 16 5 O -0.54 -8.16 15.52 5.56 0.09 -8.07 16 6 N -0.61 -6.72 2.98 -172.99 -0.52 -7.23 16 7 C 0.11 1.12 6.41 -3.70 -0.02 1.10 16 8 C -0.13 -1.24 5.76 -26.61 -0.15 -1.39 16 9 C 0.10 1.21 2.62 -26.65 -0.07 1.14 16 10 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 11 O -0.38 -5.18 10.50 -35.23 -0.37 -5.55 16 12 C 0.07 0.89 7.00 37.19 0.26 1.15 16 13 C 0.02 0.26 5.28 -3.70 -0.02 0.25 16 14 N -0.50 -7.70 4.29 -227.97 -0.98 -8.68 16 15 C 0.04 0.65 5.22 -4.98 -0.03 0.62 16 16 C 0.44 9.68 7.49 -10.99 -0.08 9.59 16 17 O -0.58 -14.45 13.90 5.55 0.08 -14.37 16 18 N -0.56 -13.36 5.29 -10.97 -0.06 -13.42 16 19 C -0.30 -7.96 9.68 -14.93 -0.14 -8.10 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.53 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -23.53 13.05 55.50 0.72 -22.81 16 23 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 24 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 C 0.04 0.49 1.96 -67.77 -0.13 0.35 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 C 0.11 1.21 4.69 -3.92 -0.02 1.19 16 30 H 0.06 0.57 7.35 -51.93 -0.38 0.18 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 0.86 6.46 -51.93 -0.34 0.52 16 34 H 0.07 0.68 7.87 -51.93 -0.41 0.27 16 35 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 1.03 7.03 -51.93 -0.37 0.66 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.12 2.15 5.85 -51.93 -0.30 1.84 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.26 5.93 -51.93 -0.31 0.95 16 47 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 48 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 49 H 0.09 0.97 3.43 -51.93 -0.18 0.79 16 50 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -31.10 386.21 -8.41 -39.51 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -8.03 Total: 10.11 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: -0.14 Total: 9.39 kcal Atomic # 7 Polarization: -51.31 SS G_CDS: -0.83 Total: -52.14 kcal Atomic # 8 Polarization: -27.79 SS G_CDS: -0.21 Total: -27.99 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.10 -8.41 -39.51 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176912505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.786 kcal (2) G-P(sol) polarization free energy of solvation -31.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds