Wall clock time and date at job start Tue Mar 31 2020 23:10:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47693 * 2 1 4 4 C 1.50706 * 109.47165 * 239.99558 * 2 1 3 5 5 O 1.21282 * 119.99569 * 94.97530 * 4 2 1 6 6 N 1.34769 * 120.00193 * 274.97703 * 4 2 1 7 7 C 1.46900 * 120.56216 * 184.99529 * 6 4 2 8 8 C 1.53248 * 108.93477 * 126.83031 * 7 6 4 9 9 C 1.52992 * 109.13553 * 54.39496 * 8 7 6 10 10 H 1.09002 * 109.47803 * 58.16202 * 9 8 7 11 11 O 1.42901 * 109.88186 * 178.42200 * 9 8 7 12 12 C 1.43084 * 113.56467 * 178.84107 * 11 9 8 13 13 C 1.53059 * 109.40821 * 301.50295 * 12 11 9 14 14 N 1.47068 * 109.39889 * 56.51570 * 13 12 11 15 15 C 1.46904 * 111.00279 * 177.90223 * 14 13 12 16 16 C 1.50695 * 109.46983 * 293.95584 * 15 14 13 17 17 O 1.21292 * 120.00078 * 359.97438 * 16 15 14 18 18 N 1.34783 * 120.00244 * 180.02562 * 16 15 14 19 19 C 1.37095 * 119.99936 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00424 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99310 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00488 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99737 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47288 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47178 * 119.99643 * 23 21 19 26 26 H 1.48497 * 109.47317 * 239.99749 * 23 21 19 27 27 C 1.46913 * 110.61168 * 301.57749 * 14 13 12 28 28 H 1.08999 * 109.51439 * 298.93448 * 27 14 13 29 29 C 1.46998 * 120.56144 * 4.72028 * 6 4 2 30 30 H 1.08995 * 109.47482 * 183.67598 * 1 2 3 31 31 H 1.09000 * 109.47321 * 303.68512 * 1 2 3 32 32 H 1.09004 * 109.46751 * 63.67713 * 1 2 3 33 33 H 1.09005 * 109.46605 * 119.99993 * 2 1 3 34 34 H 1.09000 * 109.46738 * 299.99980 * 3 2 1 35 35 H 1.08999 * 109.46997 * 59.99692 * 3 2 1 36 36 H 1.08992 * 109.47052 * 180.02562 * 3 2 1 37 37 H 1.08999 * 109.56629 * 246.67461 * 7 6 4 38 38 H 1.09005 * 109.55684 * 7.00155 * 7 6 4 39 39 H 1.08997 * 109.52729 * 174.29065 * 8 7 6 40 40 H 1.08999 * 109.52568 * 294.49881 * 8 7 6 41 41 H 1.09002 * 109.47527 * 61.47978 * 12 11 9 42 42 H 1.08992 * 109.48390 * 181.50305 * 12 11 9 43 43 H 1.09002 * 109.48608 * 176.49418 * 13 12 11 44 44 H 1.08999 * 109.48492 * 296.52522 * 13 12 11 45 45 H 1.09000 * 109.47060 * 53.95336 * 15 14 13 46 46 H 1.09003 * 109.47273 * 173.95686 * 15 14 13 47 47 H 0.97002 * 119.99564 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00187 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.61844 * 353.24144 * 29 6 4 50 50 H 1.08996 * 109.62234 * 113.79307 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.3203 -0.0750 -2.2225 6 7 2.1615 -2.0520 -1.2284 7 6 2.7519 -2.7473 -2.3800 8 6 3.8945 -3.6422 -1.8882 9 6 3.3688 -4.5690 -0.7903 10 1 2.5438 -5.1644 -1.1816 11 8 4.4134 -5.4367 -0.3453 12 6 4.0127 -6.3230 0.7041 13 6 3.5155 -5.5051 1.8985 14 7 2.4228 -4.6215 1.4646 15 6 1.8849 -3.8547 2.5962 16 6 1.2211 -4.7944 3.5695 17 8 1.1980 -5.9856 3.3426 18 7 0.6522 -4.3110 4.6917 19 6 0.0479 -5.1658 5.5768 20 1 0.0273 -6.2265 5.3748 21 6 -0.5390 -4.6673 6.7334 22 7 -0.5144 -3.3766 6.9790 23 14 -1.3631 -5.8320 7.9392 24 1 -1.2557 -7.2245 7.4346 25 1 -0.6938 -5.7311 9.2610 26 1 -2.7954 -5.4663 8.0805 27 6 2.8762 -3.7273 0.3907 28 1 3.6902 -3.1018 0.7571 29 6 1.7196 -2.8437 -0.0714 30 1 -0.3634 -1.0255 0.0659 31 1 -0.3634 0.5700 0.8551 32 1 -0.3633 0.4557 -0.9212 33 1 1.8932 -0.5139 0.8901 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 3.1300 1.4423 -0.0005 37 1 1.9919 -3.3594 -2.8656 38 1 3.1405 -2.0154 -3.0881 39 1 4.2731 -4.2388 -2.7181 40 1 4.6967 -3.0220 -1.4882 41 1 3.2110 -6.9697 0.3473 42 1 4.8629 -6.9328 1.0094 43 1 3.1519 -6.1788 2.6744 44 1 4.3343 -4.9038 2.2935 45 1 2.6970 -3.3274 3.0966 46 1 1.1536 -3.1333 2.2314 47 1 0.6704 -3.3582 4.8729 48 1 -0.9239 -3.0287 7.7866 49 1 1.4249 -2.1758 0.7380 50 1 0.8753 -3.4707 -0.3579 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176912505.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:02 Heat of formation + Delta-G solvation = -127.538847 kcal Electronic energy + Delta-G solvation = -31571.352690 eV Core-core repulsion = 27404.745499 eV Total energy + Delta-G solvation = -4166.607191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.95710 -40.72453 -39.80539 -37.57889 -36.85344 -35.80082 -35.53141 -33.26944 -33.11882 -31.70856 -30.36295 -28.08179 -27.68477 -26.77304 -25.87781 -24.25555 -23.91167 -22.21335 -21.38538 -20.95448 -19.90251 -19.83997 -18.74959 -17.79670 -17.42301 -17.16999 -16.86747 -16.72970 -16.44202 -16.21582 -15.85994 -15.64357 -15.52669 -15.43584 -14.98483 -14.90321 -14.54476 -14.33863 -14.06367 -13.90169 -13.53356 -13.47043 -13.42338 -13.21873 -13.10598 -12.97159 -12.86851 -12.59151 -12.46355 -12.37551 -12.26614 -12.10609 -12.09925 -11.93153 -11.87308 -11.53163 -11.40144 -10.83104 -10.61856 -10.20827 -9.96903 -9.82645 -9.38295 -8.44365 -5.92027 1.37846 1.44342 1.51547 1.57094 1.79770 2.06580 2.28566 2.56819 2.68094 3.22062 3.29336 3.43418 3.44024 3.68654 3.85721 3.93469 3.99183 4.03140 4.05940 4.08469 4.18002 4.24183 4.28939 4.34455 4.44675 4.47567 4.51132 4.55285 4.62666 4.74512 4.74761 4.76729 4.83706 4.85379 4.89860 4.92749 4.96244 5.04721 5.14417 5.26710 5.28250 5.39541 5.44600 5.75233 5.91275 6.06480 6.15493 6.24564 6.62969 7.05999 7.16109 7.59234 8.14518 8.72981 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011240 B = 0.003459 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.415322 B = 8093.605924 C =10191.695054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.132 4.132 4 C 0.521 3.479 5 O -0.576 6.576 6 N -0.609 5.609 7 C 0.113 3.887 8 C -0.113 4.113 9 C 0.098 3.902 10 H 0.069 0.931 11 O -0.390 6.390 12 C 0.073 3.927 13 C 0.019 3.981 14 N -0.516 5.516 15 C 0.051 3.949 16 C 0.444 3.556 17 O -0.611 6.611 18 N -0.572 5.572 19 C -0.328 4.328 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.987 3.013 24 H -0.274 1.274 25 H -0.273 1.273 26 H -0.272 1.272 27 C 0.044 3.956 28 H 0.050 0.950 29 C 0.115 3.885 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.105 0.895 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.116 0.884 43 H 0.085 0.915 44 H 0.036 0.964 45 H 0.067 0.933 46 H 0.118 0.882 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.105 0.895 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.244 5.716 -14.462 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.139 4.139 3 C -0.189 4.189 4 C 0.310 3.690 5 O -0.455 6.455 6 N -0.341 5.341 7 C -0.009 4.009 8 C -0.152 4.152 9 C 0.040 3.960 10 H 0.087 0.913 11 O -0.309 6.309 12 C -0.003 4.003 13 C -0.109 4.109 14 N -0.241 5.241 15 C -0.080 4.080 16 C 0.231 3.769 17 O -0.497 6.497 18 N -0.209 5.209 19 C -0.458 4.458 20 H 0.097 0.903 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.812 3.188 24 H -0.198 1.198 25 H -0.199 1.199 26 H -0.198 1.198 27 C -0.065 4.065 28 H 0.068 0.932 29 C -0.008 4.008 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.123 0.877 34 H 0.073 0.927 35 H 0.101 0.899 36 H 0.069 0.931 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.134 0.866 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.085 0.915 46 H 0.136 0.864 47 H 0.230 0.770 48 H 0.086 0.914 49 H 0.123 0.877 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 6.110 5.069 -15.254 17.196 hybrid contribution 0.020 0.273 1.507 1.532 sum 6.129 5.342 -13.747 15.971 Atomic orbital electron populations 1.21786 0.91432 1.03253 1.03486 1.21431 0.98816 0.98015 0.95671 1.21637 1.00848 0.93512 1.02942 1.21153 0.76310 0.81526 0.89967 1.90652 1.52158 1.66146 1.36566 1.48200 1.61485 1.06072 1.18379 1.21668 0.95492 0.95628 0.88134 1.21839 0.98196 0.97014 0.98151 1.22192 0.90257 0.90739 0.92851 0.91265 1.87930 1.37348 1.51493 1.54131 1.22652 1.00771 0.91214 0.85703 1.22858 0.91613 0.97021 0.99386 1.61800 1.33502 1.19998 1.08842 1.21863 0.99977 0.94866 0.91249 1.20588 0.83443 0.89481 0.83377 1.90470 1.63908 1.18175 1.77185 1.41905 1.50154 1.10145 1.18732 1.19659 1.33206 0.91929 1.01020 0.90260 1.25939 0.97923 0.97889 0.99221 1.69662 1.45485 1.12755 1.28087 0.84944 0.78053 0.78058 0.77758 1.19821 1.19877 1.19777 1.22549 0.97016 0.93985 0.92966 0.93213 1.21793 0.96064 0.94341 0.88570 0.91730 0.89581 0.92544 0.87709 0.92651 0.89867 0.93063 0.89584 0.88798 0.87709 0.91415 0.92556 0.86590 0.89723 0.94544 0.91542 0.86448 0.76998 0.91394 0.87717 0.89369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.01 71.98 0.65 -1.63 16 2 C -0.12 -2.12 2.39 -11.54 -0.03 -2.15 16 3 C -0.13 -2.31 8.73 71.98 0.63 -1.68 16 4 C 0.52 11.88 6.80 87.66 0.60 12.48 16 5 O -0.58 -16.91 15.52 -3.04 -0.05 -16.96 16 6 N -0.61 -12.20 2.98 -819.60 -2.44 -14.65 16 7 C 0.11 2.01 6.41 86.39 0.55 2.57 16 8 C -0.11 -2.00 5.76 30.67 0.18 -1.82 16 9 C 0.10 2.15 2.62 30.65 0.08 2.23 16 10 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 11 O -0.39 -9.80 10.50 -148.98 -1.56 -11.36 16 12 C 0.07 1.86 7.00 72.00 0.50 2.37 16 13 C 0.02 0.58 5.28 86.29 0.46 1.04 16 14 N -0.52 -15.09 4.29 -875.15 -3.75 -18.84 16 15 C 0.05 1.58 5.22 85.55 0.45 2.03 16 16 C 0.44 19.41 7.49 87.65 0.66 20.06 16 17 O -0.61 -31.21 13.90 -3.07 -0.04 -31.25 16 18 N -0.57 -27.38 5.29 -306.99 -1.62 -29.00 16 19 C -0.33 -17.73 9.68 84.04 0.81 -16.92 16 20 H 0.08 4.60 7.16 -2.91 -0.02 4.57 16 21 C -0.01 -0.50 5.50 84.93 0.47 -0.03 16 22 N -0.92 -47.49 13.05 21.66 0.28 -47.20 16 23 Si 0.99 41.45 29.55 68.60 2.03 43.48 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 C 0.04 1.02 1.96 44.87 0.09 1.11 16 28 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 29 C 0.12 2.27 4.69 86.19 0.40 2.67 16 30 H 0.06 1.01 7.35 -2.39 -0.02 0.99 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.06 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.10 1.64 6.46 -2.38 -0.02 1.62 16 34 H 0.05 1.09 7.87 -2.39 -0.02 1.07 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.09 1.83 7.03 -2.38 -0.02 1.81 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 43 H 0.08 3.16 5.85 -2.39 -0.01 3.14 16 44 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.07 1.87 8.12 -2.39 -0.02 1.85 16 46 H 0.12 2.98 5.93 -2.39 -0.01 2.97 16 47 H 0.40 17.93 7.90 -92.71 -0.73 17.20 16 48 H 0.28 13.42 8.31 -92.71 -0.77 12.65 16 49 H 0.10 1.84 3.43 -2.39 -0.01 1.83 16 50 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.20 386.21 -0.45 -67.65 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.22 Total: 35.82 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 6.49 Total: 22.32 kcal Atomic # 7 Polarization: -102.15 SS G_CDS: -7.54 Total: -109.69 kcal Atomic # 8 Polarization: -57.92 SS G_CDS: -1.65 Total: -59.57 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -67.20 -0.45 -67.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176912505.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.887 kcal (2) G-P(sol) polarization free energy of solvation -67.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds