Wall clock time and date at job start Tue Mar 31 2020 23:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47558 * 2 1 4 4 C 1.50703 * 109.46923 * 119.99684 * 2 1 3 5 5 O 1.21277 * 120.00520 * 264.94695 * 4 2 1 6 6 N 1.34785 * 119.99637 * 84.95201 * 4 2 1 7 7 C 1.46956 * 120.68300 * 174.91355 * 6 4 2 8 8 C 1.53168 * 108.60686 * 234.11848 * 7 6 4 9 9 C 1.50838 * 109.83451 * 305.92900 * 8 7 6 10 10 H 1.09001 * 108.80706 * 180.22738 * 9 8 7 11 11 O 1.42883 * 109.48223 * 299.06220 * 9 8 7 12 12 C 1.43081 * 113.55095 * 181.10019 * 11 9 8 13 13 C 1.53068 * 109.36031 * 301.72350 * 12 11 9 14 14 N 1.47072 * 110.20148 * 55.92569 * 13 12 11 15 15 C 1.46902 * 111.76983 * 178.58020 * 14 13 12 16 16 C 1.50699 * 109.47611 * 293.83398 * 15 14 13 17 17 O 1.21299 * 119.99495 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00421 * 180.02562 * 16 15 14 19 19 C 1.37101 * 120.00187 * 180.02562 * 18 16 15 20 20 H 1.08001 * 119.99457 * 359.97438 * 19 18 16 21 21 C 1.38947 * 120.00060 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00300 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99808 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47239 * 0.02562 * 23 21 19 25 25 H 1.48509 * 109.46835 * 120.00000 * 23 21 19 26 26 H 1.48500 * 109.47360 * 239.99953 * 23 21 19 27 27 C 1.47265 * 110.47991 * 302.70691 * 14 13 12 28 28 H 1.08999 * 109.73021 * 178.36850 * 27 14 13 29 29 C 1.46852 * 120.68839 * 354.93098 * 6 4 2 30 30 H 1.08992 * 109.47433 * 181.56681 * 1 2 3 31 31 H 1.09004 * 109.46639 * 301.57185 * 1 2 3 32 32 H 1.09002 * 109.46786 * 61.56228 * 1 2 3 33 33 H 1.08994 * 109.46841 * 239.99627 * 2 1 3 34 34 H 1.08991 * 109.47648 * 180.02562 * 3 2 1 35 35 H 1.09003 * 109.46776 * 300.00431 * 3 2 1 36 36 H 1.09006 * 109.47253 * 59.99581 * 3 2 1 37 37 H 1.09002 * 109.61255 * 353.85563 * 7 6 4 38 38 H 1.09001 * 109.61241 * 114.20432 * 7 6 4 39 39 H 1.08995 * 109.45445 * 65.47916 * 8 7 6 40 40 H 1.09006 * 109.45343 * 185.41093 * 8 7 6 41 41 H 1.08996 * 109.48984 * 61.69076 * 12 11 9 42 42 H 1.08996 * 109.48711 * 181.75713 * 12 11 9 43 43 H 1.08995 * 109.47358 * 176.41565 * 13 12 11 44 44 H 1.08998 * 109.47609 * 296.43867 * 13 12 11 45 45 H 1.09002 * 109.47752 * 53.84134 * 15 14 13 46 46 H 1.09001 * 109.47043 * 173.83590 * 15 14 13 47 47 H 0.97001 * 120.00254 * 0.02562 * 18 16 15 48 48 H 0.96995 * 120.00087 * 180.02562 * 22 21 19 49 49 H 1.09010 * 109.55301 * 6.12859 * 29 6 4 50 50 H 1.08993 * 109.64235 * 245.87147 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3217 -0.0748 2.2221 6 7 2.1601 -2.0521 1.2291 7 6 2.7520 -2.7503 2.3788 8 6 3.9051 -3.6255 1.8783 9 6 3.4175 -4.5343 0.7776 10 1 4.2490 -5.1514 0.4372 11 8 2.3879 -5.3860 1.2838 12 6 1.8779 -6.3054 0.3134 13 6 1.3291 -5.5263 -0.8844 14 7 2.3695 -4.6462 -1.4376 15 6 1.8888 -3.9056 -2.6117 16 6 1.6161 -4.8700 -3.7371 17 8 1.8032 -6.0577 -3.5766 18 7 1.1642 -4.4131 -4.9217 19 6 0.9156 -5.2906 -5.9453 20 1 1.0823 -6.3481 -5.8024 21 6 0.4503 -4.8194 -7.1668 22 7 0.2480 -3.5326 -7.3408 23 14 0.1123 -6.0150 -8.5617 24 1 0.4172 -7.3975 -8.1135 25 1 -1.3173 -5.9264 -8.9541 26 1 0.9674 -5.6717 -9.7262 27 6 2.8703 -3.7264 -0.4023 28 1 3.6600 -3.1002 -0.8172 29 6 1.7111 -2.8465 0.0785 30 1 -0.3634 -1.0272 0.0281 31 1 -0.3633 0.5381 0.8756 32 1 -0.3633 0.4894 -0.9037 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6768 1.9564 0.8900 37 1 3.1304 -2.0207 3.0947 38 1 1.9965 -3.3740 2.8566 39 1 4.6994 -2.9903 1.4865 40 1 4.2923 -4.2228 2.7039 41 1 2.6792 -6.9656 -0.0184 42 1 1.0789 -6.8981 0.7587 43 1 0.9983 -6.2258 -1.6521 44 1 0.4869 -4.9130 -0.5641 45 1 0.9709 -3.3759 -2.3566 46 1 2.6474 -3.1879 -2.9242 47 1 1.0149 -3.4633 -5.0502 48 1 -0.0772 -3.2038 -8.1934 49 1 1.4010 -2.1799 -0.7264 50 1 0.8724 -3.4770 0.3734 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176912507.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:10 Heat of formation + Delta-G solvation = -103.163499 kcal Electronic energy + Delta-G solvation = -31761.524574 eV Core-core repulsion = 27595.974378 eV Total energy + Delta-G solvation = -4165.550196 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.13862 -39.59108 -38.21815 -36.19178 -35.71888 -34.69455 -33.91309 -32.36870 -31.33646 -30.29120 -29.16972 -27.37959 -26.19827 -25.79279 -24.44809 -23.64771 -23.19588 -21.45879 -19.69580 -19.28204 -18.67655 -17.93699 -17.70037 -16.54097 -16.32437 -16.06005 -15.93046 -15.60277 -15.06614 -14.84553 -14.73089 -14.34396 -14.25461 -14.09343 -13.94541 -13.52858 -13.41553 -13.26002 -12.99781 -12.69336 -12.61443 -12.45550 -12.27953 -12.14009 -11.92109 -11.71541 -11.52106 -11.49779 -11.37771 -11.29041 -11.12284 -10.97787 -10.83848 -10.44156 -10.39440 -10.29310 -9.78414 -9.65841 -9.54261 -9.04674 -8.47023 -8.05338 -7.90756 -6.48939 -3.89946 2.48459 2.78552 3.11197 3.22753 3.29192 3.65293 3.73716 3.80927 4.14505 4.29933 4.41111 4.62537 4.65112 4.77360 4.79700 4.88787 4.92228 4.97728 5.05367 5.14573 5.17916 5.27809 5.31103 5.32212 5.42443 5.45298 5.51846 5.60199 5.60726 5.63650 5.65654 5.70850 5.73605 5.76451 5.78321 5.92348 5.95514 6.03031 6.08960 6.15058 6.21080 6.31712 7.04310 7.04709 7.16447 7.26964 7.48756 7.98523 8.02944 8.53071 9.10722 9.45793 9.96728 10.68642 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.003300 C = 0.002731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.196028 B = 8481.695290 C =10251.611343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.118 4.118 3 C -0.133 4.133 4 C 0.521 3.479 5 O -0.545 6.545 6 N -0.606 5.606 7 C 0.115 3.885 8 C -0.125 4.125 9 C 0.102 3.898 10 H 0.069 0.931 11 O -0.382 6.382 12 C 0.067 3.933 13 C 0.013 3.987 14 N -0.503 5.503 15 C 0.045 3.955 16 C 0.442 3.558 17 O -0.578 6.578 18 N -0.561 5.561 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.024 3.976 22 N -0.900 5.900 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.042 3.958 28 H 0.095 0.905 29 C 0.075 3.925 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.065 0.935 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.034 0.966 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.089 0.911 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.855 5.379 15.789 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.139 4.139 3 C -0.191 4.191 4 C 0.310 3.690 5 O -0.422 6.422 6 N -0.339 5.339 7 C -0.007 4.007 8 C -0.163 4.163 9 C 0.043 3.957 10 H 0.087 0.913 11 O -0.302 6.302 12 C -0.009 4.009 13 C -0.115 4.115 14 N -0.227 5.227 15 C -0.086 4.086 16 C 0.228 3.772 17 O -0.462 6.462 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.178 4.178 22 N -0.541 5.541 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.068 4.068 28 H 0.113 0.887 29 C -0.050 4.050 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.084 0.916 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.080 0.920 42 H 0.115 0.885 43 H 0.133 0.867 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.109 0.891 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.107 0.893 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 3.381 4.713 16.277 17.280 hybrid contribution -0.904 0.463 -1.135 1.523 sum 2.477 5.176 15.141 16.192 Atomic orbital electron populations 1.21771 0.92485 1.02630 1.03185 1.21345 0.98026 0.98001 0.96545 1.21638 1.01270 0.93618 1.02554 1.20734 0.77099 0.81505 0.89680 1.90658 1.50737 1.65587 1.35242 1.48062 1.61435 1.05892 1.18552 1.21525 0.95497 0.95445 0.88239 1.21536 0.98229 0.97706 0.98827 1.21553 0.90567 0.91285 0.92250 0.91342 1.87942 1.54748 1.50253 1.37215 1.22662 0.98820 0.91171 0.88278 1.22982 0.92432 0.97537 0.98516 1.61845 1.37350 1.19052 1.04481 1.21902 0.99573 0.95998 0.91115 1.19643 0.84402 0.89208 0.83974 1.90489 1.56983 1.16646 1.82108 1.41861 1.57338 1.10252 1.10337 1.19742 1.40907 0.92126 0.90124 0.87817 1.25258 0.97187 0.96541 0.98825 1.69610 1.45913 1.12587 1.26038 0.85812 0.77927 0.80329 0.80361 1.19197 1.20739 1.20704 1.22789 0.97455 0.93682 0.92909 0.88667 1.22583 0.98715 0.95102 0.88620 0.92239 0.91897 0.90961 0.88882 0.92417 0.91725 0.91561 0.89087 0.90739 0.90087 0.89398 0.92018 0.88547 0.86683 0.94782 0.93286 0.89121 0.77506 0.91855 0.89327 0.90248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.98 37.16 0.33 -0.97 16 2 C -0.12 -1.19 2.39 -91.77 -0.22 -1.41 16 3 C -0.13 -1.27 8.72 37.16 0.32 -0.95 16 4 C 0.52 6.48 6.80 -10.98 -0.07 6.40 16 5 O -0.54 -8.40 15.53 5.56 0.09 -8.31 16 6 N -0.61 -6.90 2.97 -172.77 -0.51 -7.41 16 7 C 0.12 1.23 6.21 -3.71 -0.02 1.20 16 8 C -0.12 -1.18 5.73 -27.73 -0.16 -1.33 16 9 C 0.10 1.16 2.79 -27.76 -0.08 1.08 16 10 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 11 O -0.38 -4.73 9.45 -35.23 -0.33 -5.06 16 12 C 0.07 0.85 7.02 37.19 0.26 1.11 16 13 C 0.01 0.19 4.91 -3.69 -0.02 0.17 16 14 N -0.50 -7.51 4.41 -227.37 -1.00 -8.51 16 15 C 0.05 0.72 4.85 -4.98 -0.02 0.70 16 16 C 0.44 9.67 7.52 -10.99 -0.08 9.59 16 17 O -0.58 -14.51 13.93 5.54 0.08 -14.44 16 18 N -0.56 -13.40 5.29 -10.96 -0.06 -13.45 16 19 C -0.30 -7.98 9.68 -14.93 -0.14 -8.13 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 22 N -0.90 -23.60 13.05 55.50 0.72 -22.88 16 23 Si 0.93 20.37 29.55 -169.99 -5.02 15.34 16 24 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.04 0.50 2.52 -67.32 -0.17 0.33 16 28 H 0.10 1.10 8.09 -51.93 -0.42 0.69 16 29 C 0.07 0.83 4.16 -3.71 -0.02 0.81 16 30 H 0.06 0.55 7.35 -51.93 -0.38 0.17 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.86 6.50 -51.93 -0.34 0.52 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.69 7.87 -51.93 -0.41 0.28 16 37 H 0.09 1.02 7.04 -51.93 -0.37 0.65 16 38 H 0.07 0.82 7.88 -51.93 -0.41 0.41 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.12 2.05 5.93 -51.93 -0.31 1.74 16 44 H 0.03 0.47 6.18 -51.93 -0.32 0.15 16 45 H 0.05 0.70 7.04 -51.93 -0.37 0.33 16 46 H 0.09 1.31 8.04 -51.93 -0.42 0.89 16 47 H 0.39 8.93 7.90 -40.82 -0.32 8.60 16 48 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 49 H 0.09 0.92 4.01 -51.92 -0.21 0.71 16 50 H 0.08 0.96 5.82 -51.93 -0.30 0.66 16 LS Contribution 381.68 15.07 5.75 5.75 Total: -1.00 -31.07 381.68 -8.36 -39.42 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.88 Total: 10.42 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -0.19 Total: 9.12 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: -0.85 Total: -52.25 kcal Atomic # 8 Polarization: -27.64 SS G_CDS: -0.17 Total: -27.81 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.07 -8.36 -39.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176912507.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.740 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds