Wall clock time and date at job start Tue Mar 31 2020 23:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47301 * 2 1 4 4 C 1.50699 * 109.47504 * 120.00665 * 2 1 3 5 5 O 1.21287 * 119.99477 * 338.75613 * 4 2 1 6 6 N 1.34770 * 120.00145 * 158.76437 * 4 2 1 7 7 C 1.46890 * 120.56088 * 355.49958 * 6 4 2 8 8 C 1.53255 * 108.94280 * 233.15452 * 7 6 4 9 9 C 1.52991 * 109.14002 * 305.62227 * 8 7 6 10 10 H 1.09005 * 109.47795 * 301.80574 * 9 8 7 11 11 O 1.42907 * 109.87322 * 181.54129 * 9 8 7 12 12 C 1.43074 * 113.57391 * 181.16577 * 11 9 8 13 13 C 1.53066 * 109.41019 * 58.49458 * 12 11 9 14 14 N 1.47070 * 109.39086 * 303.47814 * 13 12 11 15 15 C 1.46901 * 111.00005 * 182.10551 * 14 13 12 16 16 C 1.50702 * 109.46995 * 66.56562 * 15 14 13 17 17 O 1.21291 * 120.00316 * 359.97438 * 16 15 14 18 18 N 1.34773 * 120.00106 * 180.02562 * 16 15 14 19 19 C 1.37091 * 120.00571 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99758 * 359.97438 * 19 18 16 21 21 C 1.38949 * 120.00240 * 179.97438 * 19 18 16 22 22 N 1.31407 * 120.00220 * 0.02562 * 21 19 18 23 23 Si 1.86810 * 119.99915 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46884 * 0.02562 * 23 21 19 25 25 H 1.48496 * 109.47050 * 120.00355 * 23 21 19 26 26 H 1.48498 * 109.46794 * 240.00397 * 23 21 19 27 27 C 1.46897 * 110.59638 * 58.43712 * 14 13 12 28 28 H 1.09003 * 109.70537 * 61.15395 * 27 14 13 29 29 C 1.46998 * 120.55906 * 175.52694 * 6 4 2 30 30 H 1.08999 * 109.47380 * 299.99610 * 1 2 3 31 31 H 1.09005 * 109.47168 * 59.99778 * 1 2 3 32 32 H 1.08999 * 109.47208 * 180.02562 * 1 2 3 33 33 H 1.09011 * 109.47028 * 240.00506 * 2 1 3 34 34 H 1.08999 * 109.47276 * 301.94009 * 3 2 1 35 35 H 1.09008 * 109.46928 * 61.93580 * 3 2 1 36 36 H 1.08998 * 109.47454 * 181.93238 * 3 2 1 37 37 H 1.08994 * 109.55972 * 113.31885 * 7 6 4 38 38 H 1.08997 * 109.64758 * 353.04704 * 7 6 4 39 39 H 1.08997 * 109.52366 * 185.72011 * 8 7 6 40 40 H 1.09003 * 109.57624 * 65.55483 * 8 7 6 41 41 H 1.08997 * 109.47621 * 178.47836 * 12 11 9 42 42 H 1.08998 * 109.47911 * 298.51210 * 12 11 9 43 43 H 1.09005 * 109.47834 * 63.45127 * 13 12 11 44 44 H 1.09001 * 109.48042 * 183.50133 * 13 12 11 45 45 H 1.08991 * 109.46868 * 186.56458 * 15 14 13 46 46 H 1.08996 * 109.46776 * 306.56516 * 15 14 13 47 47 H 0.97005 * 119.99938 * 359.97438 * 18 16 15 48 48 H 0.96999 * 120.00462 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.62282 * 246.19959 * 29 6 4 50 50 H 1.09000 * 109.62161 * 6.75682 * 29 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2303 5 8 1.3115 -0.8301 2.1984 6 7 3.2827 -1.2129 1.2550 7 6 4.1317 -1.1624 0.0574 8 6 4.6505 -2.5725 -0.2446 9 6 5.3439 -3.1291 1.0004 10 1 6.1582 -2.4651 1.2904 11 8 5.8656 -4.4308 0.7248 12 6 6.5103 -5.0384 1.8483 13 6 5.5170 -5.1461 3.0079 14 7 4.9865 -3.8109 3.3220 15 6 4.0653 -3.8660 4.4650 16 6 4.8302 -4.2376 5.7092 17 8 6.0251 -4.4374 5.6496 18 7 4.1865 -4.3489 6.8880 19 6 4.8821 -4.6875 8.0197 20 1 5.9460 -4.8654 7.9666 21 6 4.2184 -4.8017 9.2351 22 7 2.9238 -4.5858 9.2997 23 14 5.1663 -5.2638 10.7771 24 1 6.5999 -5.4526 10.4389 25 1 5.0341 -4.1794 11.7830 26 1 4.6184 -6.5261 11.3352 27 6 4.3309 -3.2253 2.1451 28 1 3.4944 -3.8539 1.8397 29 6 3.8196 -1.8213 2.4807 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.6486 1.9663 -0.8721 35 1 1.7053 1.9462 0.9069 36 1 3.1294 1.4427 -0.0347 37 1 4.9741 -0.4940 0.2352 38 1 3.5497 -0.7986 -0.7893 39 1 5.3616 -2.5301 -1.0695 40 1 3.8155 -3.2185 -0.5161 41 1 6.8575 -6.0343 1.5732 42 1 7.3604 -4.4283 2.1533 43 1 4.6969 -5.8057 2.7239 44 1 6.0235 -5.5516 3.8838 45 1 3.5989 -2.8906 4.6030 46 1 3.2951 -4.6135 4.2751 47 1 3.2308 -4.1895 6.9356 48 1 2.4604 -4.6659 10.1480 49 1 4.6412 -1.2144 2.8611 50 1 3.0322 -1.8882 3.2315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176912508.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:10:14 Heat of formation + Delta-G solvation = -104.047078 kcal Electronic energy + Delta-G solvation = -31239.912164 eV Core-core repulsion = 27074.323653 eV Total energy + Delta-G solvation = -4165.588511 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.91571 -39.58446 -38.11449 -36.60981 -35.56210 -34.75546 -33.82503 -32.15100 -31.25773 -30.71501 -29.00239 -27.48425 -26.53499 -25.34337 -24.25958 -23.65450 -22.40216 -21.60420 -20.23707 -19.17129 -18.95904 -17.86382 -17.80783 -16.56701 -16.19445 -15.96868 -15.79726 -15.57746 -15.13621 -14.74341 -14.66200 -14.37745 -14.26826 -14.02737 -13.83613 -13.61028 -13.50187 -13.17449 -13.05190 -12.87824 -12.52473 -12.43484 -12.36446 -12.14012 -11.99305 -11.64636 -11.53317 -11.48208 -11.44215 -11.22228 -11.12627 -11.02301 -10.81657 -10.38428 -10.34082 -10.22326 -9.82563 -9.55792 -9.47688 -8.88327 -8.48154 -8.01757 -7.92492 -6.41091 -3.82250 2.45521 2.68249 3.16438 3.27078 3.33903 3.61627 3.81381 3.89588 4.16162 4.21123 4.47696 4.49566 4.58123 4.67279 4.73443 4.89408 4.92414 5.02857 5.08703 5.12361 5.24064 5.25291 5.28105 5.30610 5.36016 5.40818 5.47453 5.51731 5.56299 5.58565 5.61486 5.69342 5.80037 5.82577 5.84274 5.90062 5.94213 5.98327 6.13534 6.21752 6.26941 6.30543 7.10002 7.12123 7.16766 7.28511 7.55602 8.00599 8.06162 8.61259 9.17928 9.54295 10.05318 10.76548 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012691 B = 0.003020 C = 0.002530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.732992 B = 9268.660417 C =11063.145383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.115 4.115 3 C -0.142 4.142 4 C 0.518 3.482 5 O -0.534 6.534 6 N -0.613 5.613 7 C 0.108 3.892 8 C -0.127 4.127 9 C 0.101 3.899 10 H 0.069 0.931 11 O -0.386 6.386 12 C 0.068 3.932 13 C 0.017 3.983 14 N -0.504 5.504 15 C 0.040 3.960 16 C 0.445 3.555 17 O -0.579 6.579 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.900 5.900 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.041 3.959 28 H 0.050 0.950 29 C 0.116 3.884 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.093 0.907 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.094 0.906 39 H 0.088 0.912 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.032 0.968 44 H 0.116 0.884 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.082 0.918 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.128 8.395 -23.208 24.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 C -0.200 4.200 4 C 0.306 3.694 5 O -0.410 6.410 6 N -0.347 5.347 7 C -0.015 4.015 8 C -0.166 4.166 9 C 0.043 3.957 10 H 0.087 0.913 11 O -0.305 6.305 12 C -0.009 4.009 13 C -0.111 4.111 14 N -0.229 5.229 15 C -0.091 4.091 16 C 0.230 3.770 17 O -0.464 6.464 18 N -0.199 5.199 19 C -0.428 4.428 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.541 5.541 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.069 4.069 28 H 0.068 0.932 29 C -0.006 4.006 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.111 0.889 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.093 0.907 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.050 0.950 44 H 0.134 0.866 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.226 0.774 48 H 0.081 0.919 49 H 0.100 0.900 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.462 8.399 -22.586 24.102 hybrid contribution -0.839 -0.679 0.963 1.446 sum -1.301 7.721 -21.623 22.997 Atomic orbital electron populations 1.21653 0.92415 1.02711 1.02511 1.21344 0.98375 0.97495 0.96443 1.21756 1.01330 0.93778 1.03118 1.20741 0.80643 0.78334 0.89703 1.90725 1.55217 1.57968 1.37047 1.48151 1.14266 1.59529 1.12747 1.21814 0.95048 0.96828 0.87826 1.21918 1.01136 0.95935 0.97578 1.22036 0.94907 0.85529 0.93268 0.91258 1.87907 1.75504 1.30924 1.36132 1.22678 0.94693 0.98287 0.85195 1.22959 0.98212 0.89239 1.00649 1.61833 1.35069 1.22913 1.03094 1.21976 0.93911 1.02111 0.91117 1.19630 0.88291 0.84804 0.84242 1.90470 1.14861 1.55527 1.85536 1.41876 1.10903 1.60579 1.06494 1.19735 0.94793 1.43463 0.84845 0.87830 1.25276 0.95752 0.97494 0.99425 1.69623 1.07798 1.49409 1.27257 0.85805 0.79678 0.77991 0.80890 1.19220 1.20732 1.20771 1.22579 0.96184 0.96072 0.92034 0.93198 1.21685 0.99931 0.92303 0.86724 0.91387 0.91948 0.92305 0.88889 0.91285 0.91798 0.92043 0.90659 0.88766 0.89319 0.90641 0.88538 0.91967 0.94963 0.86579 0.88935 0.93254 0.77437 0.91877 0.90001 0.88216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.68 37.16 0.32 -0.79 16 2 C -0.12 -0.91 2.42 -91.78 -0.22 -1.13 16 3 C -0.14 -0.91 9.11 37.16 0.34 -0.57 16 4 C 0.52 6.19 6.84 -10.99 -0.08 6.12 16 5 O -0.53 -8.73 15.46 5.55 0.09 -8.64 16 6 N -0.61 -6.65 2.98 -172.74 -0.51 -7.17 16 7 C 0.11 0.78 5.83 -3.70 -0.02 0.76 16 8 C -0.13 -1.08 5.76 -26.60 -0.15 -1.24 16 9 C 0.10 1.22 2.62 -26.65 -0.07 1.15 16 10 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 11 O -0.39 -5.24 10.50 -35.23 -0.37 -5.61 16 12 C 0.07 0.94 7.00 37.19 0.26 1.20 16 13 C 0.02 0.28 5.29 -3.70 -0.02 0.26 16 14 N -0.50 -8.53 4.28 -227.71 -0.97 -9.51 16 15 C 0.04 0.74 5.23 -4.97 -0.03 0.72 16 16 C 0.44 10.54 7.49 -10.99 -0.08 10.46 16 17 O -0.58 -15.32 13.94 5.55 0.08 -15.24 16 18 N -0.56 -14.43 5.29 -10.97 -0.06 -14.49 16 19 C -0.30 -8.36 9.68 -14.94 -0.14 -8.50 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.84 13.05 55.50 0.72 -24.12 16 23 Si 0.93 21.19 29.55 -169.99 -5.02 16.16 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 C 0.04 0.58 1.97 -67.56 -0.13 0.45 16 28 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 29 C 0.12 1.55 5.28 -3.70 -0.02 1.53 16 30 H 0.07 0.66 7.89 -51.93 -0.41 0.25 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.53 6.26 -51.92 -0.32 0.21 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.50 8.14 -51.92 -0.42 0.07 16 36 H 0.06 0.35 7.69 -51.93 -0.40 -0.05 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.45 5.42 -51.93 -0.28 0.17 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.12 2.24 5.90 -51.93 -0.31 1.94 16 45 H 0.09 1.63 5.91 -51.93 -0.31 1.33 16 46 H 0.05 0.88 8.12 -51.93 -0.42 0.46 16 47 H 0.39 9.79 7.90 -40.82 -0.32 9.47 16 48 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 49 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 50 H 0.10 1.55 5.37 -51.93 -0.28 1.27 16 LS Contribution 386.80 15.07 5.83 5.83 Total: -1.00 -33.33 386.80 -8.42 -41.75 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -8.06 Total: 10.10 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: -0.14 Total: 10.92 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: -0.82 Total: -55.28 kcal Atomic # 8 Polarization: -29.28 SS G_CDS: -0.21 Total: -29.49 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.33 -8.42 -41.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176912508.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.294 kcal (2) G-P(sol) polarization free energy of solvation -33.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds