Wall clock time and date at job start Tue Mar 31 2020 23:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52990 * 109.47271 * 2 1 4 4 C 1.50704 * 109.47112 * 179.97438 * 3 2 1 5 5 O 1.21284 * 120.00088 * 0.02562 * 4 3 2 6 6 N 1.34772 * 120.00048 * 180.02562 * 4 3 2 7 7 C 1.46506 * 119.99970 * 179.72728 * 6 4 3 8 8 C 1.50704 * 109.47047 * 180.27842 * 7 6 4 9 9 O 1.21278 * 120.00159 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99507 * 180.02562 * 8 7 6 11 11 C 1.46974 * 120.72034 * 359.97438 * 10 8 7 12 12 C 1.53160 * 108.44359 * 234.51248 * 11 10 8 13 13 C 1.52505 * 109.79268 * 305.47623 * 12 11 10 14 14 H 1.08998 * 108.93696 * 179.67510 * 13 12 11 15 15 O 1.42694 * 110.62796 * 298.71729 * 13 12 11 16 16 C 1.43067 * 113.88193 * 185.33977 * 15 13 12 17 17 C 1.53225 * 109.44964 * 298.36211 * 16 15 13 18 18 N 1.47175 * 108.69674 * 51.58042 * 17 16 15 19 19 C 1.36942 * 121.22384 * 129.02057 * 18 17 16 20 20 H 1.08007 * 119.99684 * 206.18222 * 19 18 17 21 21 C 1.38808 * 120.00278 * 26.18761 * 19 18 17 22 22 N 1.31615 * 119.99898 * 16.90522 * 21 19 18 23 23 Si 1.86803 * 119.99945 * 196.90927 * 21 19 18 24 24 H 1.48499 * 109.46697 * 89.99841 * 23 21 19 25 25 H 1.48496 * 109.46964 * 209.99447 * 23 21 19 26 26 H 1.48495 * 109.47169 * 329.99826 * 23 21 19 27 27 C 1.47588 * 117.54779 * 309.04702 * 18 17 16 28 28 H 1.09004 * 110.32044 * 172.31380 * 27 18 17 29 29 C 1.46792 * 120.71381 * 179.71523 * 10 8 7 30 30 H 1.08999 * 109.47187 * 59.99954 * 1 2 3 31 31 H 1.09000 * 109.47855 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47201 * 300.00166 * 1 2 3 33 33 H 1.08996 * 109.46759 * 239.99556 * 2 1 3 34 34 H 1.09000 * 109.46691 * 120.00225 * 2 1 3 35 35 H 1.09004 * 109.47487 * 60.00438 * 3 2 1 36 36 H 1.09000 * 109.47447 * 299.99763 * 3 2 1 37 37 H 0.97000 * 120.00250 * 0.02562 * 6 4 3 38 38 H 1.09004 * 109.46936 * 300.27100 * 7 6 4 39 39 H 1.09000 * 109.47014 * 60.27196 * 7 6 4 40 40 H 1.08996 * 109.64216 * 354.19638 * 11 10 8 41 41 H 1.09003 * 109.64167 * 114.82408 * 11 10 8 42 42 H 1.08992 * 109.41909 * 65.57818 * 12 11 10 43 43 H 1.09000 * 109.41247 * 185.38103 * 12 11 10 44 44 H 1.09000 * 109.47430 * 178.36572 * 16 15 13 45 45 H 1.09000 * 109.47558 * 58.36106 * 16 15 13 46 46 H 1.09003 * 109.60136 * 291.81694 * 17 16 15 47 47 H 1.09004 * 109.72759 * 171.41829 * 17 16 15 48 48 H 0.97001 * 120.00249 * 180.02562 * 22 21 19 49 49 H 1.08999 * 109.52050 * 245.64813 * 29 10 8 50 50 H 1.09001 * 109.51953 * 5.83292 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4423 0.0006 5 8 4.1534 0.3920 0.0006 6 7 4.2209 2.6095 0.0013 7 6 5.6859 2.6094 0.0079 8 6 6.1883 4.0303 0.0142 9 8 5.4003 4.9521 0.0127 10 7 7.5134 4.2764 0.0203 11 6 8.4824 3.1713 0.0217 12 6 9.4310 3.3600 1.2092 13 6 10.0625 4.7470 1.1503 14 1 10.7296 4.8684 2.0037 15 8 10.8274 4.9008 -0.0444 16 6 11.5498 6.1337 -0.1150 17 6 10.5627 7.3054 -0.0933 18 7 9.6556 7.1369 1.0533 19 6 9.4441 8.1531 1.9466 20 1 9.1494 7.9279 2.9609 21 6 9.6085 9.4727 1.5483 22 7 9.6367 9.7749 0.2677 23 14 9.7900 10.8194 2.8301 24 1 11.2269 10.9997 3.1585 25 1 9.2416 12.0907 2.2933 26 1 9.0458 10.4383 4.0573 27 6 8.9826 5.8322 1.2054 28 1 8.4511 5.7889 2.1560 29 6 8.0201 5.6541 0.0202 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3635 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8932 -0.5139 -0.8899 34 1 1.8932 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.7360 3.4496 0.0017 38 1 6.0452 2.0932 0.8982 39 1 6.0533 2.0980 -0.8818 40 1 7.9556 2.2223 0.1209 41 1 9.0519 3.1822 -0.9077 42 1 8.8726 3.2553 2.1393 43 1 10.2146 2.6033 1.1708 44 1 12.1289 6.1632 -1.0380 45 1 12.2231 6.2097 0.7389 46 1 9.9855 7.3144 -1.0179 47 1 11.1079 8.2440 0.0066 48 1 9.7519 10.6970 -0.0107 49 1 8.5481 5.8479 -0.9135 50 1 7.1861 6.3489 0.1190 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001176943370.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:20:00 Heat of formation + Delta-G solvation = -116.704954 kcal Electronic energy + Delta-G solvation = -30698.656849 eV Core-core repulsion = 26532.519451 eV Total energy + Delta-G solvation = -4166.137398 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.71695 -40.78854 -39.93437 -37.25869 -36.46233 -35.64181 -35.20455 -33.55306 -33.11577 -31.29914 -30.19970 -29.18812 -27.82229 -25.87075 -25.59799 -24.39358 -22.97710 -22.75017 -21.35598 -21.02736 -19.76974 -18.94781 -18.61827 -17.80000 -17.29326 -17.16817 -17.03316 -16.90749 -16.59627 -16.30038 -16.15963 -15.83798 -15.45971 -15.15090 -14.95308 -14.83941 -14.47910 -14.35018 -14.05013 -13.93615 -13.72137 -13.53999 -13.42196 -13.07927 -12.87219 -12.82334 -12.65458 -12.62010 -12.44419 -12.26594 -12.11284 -12.00736 -11.86903 -11.72081 -11.59821 -11.23951 -11.00969 -10.96312 -10.77222 -10.52952 -10.24023 -9.76494 -8.73053 -7.94144 -5.41312 1.41775 1.44159 1.44582 1.53410 1.62047 1.67080 2.31117 2.45696 2.88531 3.20319 3.30524 3.44660 3.78166 3.84807 3.97896 4.04437 4.11289 4.14290 4.17818 4.24807 4.28929 4.29857 4.42416 4.51288 4.55086 4.60887 4.62307 4.72157 4.79074 4.79844 4.84195 4.88645 4.94180 4.97129 5.03275 5.19344 5.22893 5.28324 5.30057 5.30666 5.41390 5.49520 5.54902 5.59311 6.24691 6.33274 6.35880 6.46223 6.97486 7.03274 7.16927 7.69871 8.23821 9.10576 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016498 B = 0.002526 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.804558 B =11081.515724 C =12250.205152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C -0.136 4.136 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.720 5.720 7 C 0.110 3.890 8 C 0.504 3.496 9 O -0.582 6.582 10 N -0.599 5.599 11 C 0.106 3.894 12 C -0.116 4.116 13 C 0.083 3.917 14 H 0.049 0.951 15 O -0.383 6.383 16 C 0.052 3.948 17 C 0.144 3.856 18 N -0.602 5.602 19 C -0.265 4.265 20 H 0.067 0.933 21 C -0.046 4.046 22 N -0.931 5.931 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.296 1.296 26 H -0.271 1.271 27 C 0.131 3.869 28 H 0.065 0.935 29 C 0.126 3.874 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.414 0.586 38 H 0.115 0.885 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.112 0.888 44 H 0.108 0.892 45 H 0.045 0.955 46 H 0.002 0.998 47 H 0.067 0.933 48 H 0.252 0.748 49 H 0.052 0.948 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 -19.403 -0.574 21.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C -0.176 4.176 4 C 0.302 3.698 5 O -0.458 6.458 6 N -0.375 5.375 7 C -0.017 4.017 8 C 0.293 3.707 9 O -0.463 6.463 10 N -0.331 5.331 11 C -0.016 4.016 12 C -0.154 4.154 13 C 0.024 3.976 14 H 0.067 0.933 15 O -0.302 6.302 16 C -0.025 4.025 17 C 0.018 3.982 18 N -0.325 5.325 19 C -0.395 4.395 20 H 0.085 0.915 21 C -0.242 4.242 22 N -0.576 5.576 23 Si 0.797 3.203 24 H -0.207 1.207 25 H -0.222 1.222 26 H -0.196 1.196 27 C 0.023 3.977 28 H 0.083 0.917 29 C 0.001 3.999 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.252 0.748 38 H 0.133 0.867 39 H 0.130 0.870 40 H 0.139 0.861 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.130 0.870 44 H 0.126 0.874 45 H 0.063 0.937 46 H 0.020 0.980 47 H 0.085 0.915 48 H 0.061 0.939 49 H 0.070 0.930 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.308 -19.611 -0.774 21.312 hybrid contribution 0.072 2.314 0.506 2.370 sum -8.236 -17.297 -0.268 19.160 Atomic orbital electron populations 1.21769 0.93907 1.02421 1.02597 1.21252 0.96557 0.94413 1.02358 1.21783 0.88716 1.00605 1.06448 1.21345 0.91742 0.82315 0.74398 1.90683 1.71470 1.32304 1.51383 1.45912 1.06060 1.10218 1.75292 1.21116 0.82501 0.92137 1.05971 1.21032 0.82215 0.91825 0.75673 1.90683 1.55681 1.47554 1.52386 1.48242 1.05576 1.07858 1.71417 1.22041 0.90590 0.89021 0.99906 1.21847 0.99587 0.94499 0.99473 1.22308 0.92229 0.95515 0.87563 0.93251 1.87731 1.63389 1.38002 1.41046 1.23148 0.93502 0.84026 1.01870 1.21308 0.91277 0.97238 0.88343 1.44526 1.48353 1.10296 1.29324 1.19456 1.42843 0.85887 0.91301 0.91532 1.25788 1.01403 0.99424 0.97583 1.70168 1.54225 1.18112 1.15096 0.85246 0.77919 0.78369 0.78773 1.20742 1.22243 1.19601 1.21843 0.92658 0.87009 0.96140 0.91658 1.21841 0.96645 0.81907 0.99543 0.91891 0.92136 0.91906 0.92470 0.92466 0.86905 0.86895 0.74763 0.86718 0.86966 0.86133 0.90075 0.88885 0.86966 0.87424 0.93651 0.97955 0.91512 0.93908 0.92958 0.93435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.77 16 2 C -0.11 -1.53 5.22 30.59 0.16 -1.37 16 3 C -0.14 -1.81 5.70 29.85 0.17 -1.64 16 4 C 0.51 10.52 7.83 87.66 0.69 11.21 16 5 O -0.58 -15.58 15.98 -3.04 -0.05 -15.63 16 6 N -0.72 -14.92 5.53 -466.76 -2.58 -17.50 16 7 C 0.11 2.30 4.50 85.63 0.39 2.68 16 8 C 0.50 14.74 7.77 87.66 0.68 15.43 16 9 O -0.58 -21.94 15.08 -3.02 -0.05 -21.99 16 10 N -0.60 -17.73 2.96 -818.16 -2.42 -20.15 16 11 C 0.11 2.20 6.17 86.34 0.53 2.73 16 12 C -0.12 -2.46 5.82 30.48 0.18 -2.28 16 13 C 0.08 2.65 2.73 30.49 0.08 2.73 16 14 H 0.05 1.63 8.11 -2.39 -0.02 1.61 16 15 O -0.38 -12.91 9.58 -148.98 -1.43 -14.34 16 16 C 0.05 1.90 6.97 72.06 0.50 2.40 16 17 C 0.14 6.74 4.94 86.33 0.43 7.16 16 18 N -0.60 -29.51 2.71 -671.61 -1.82 -31.33 16 19 C -0.27 -14.41 9.69 84.03 0.81 -13.59 16 20 H 0.07 3.56 7.89 -2.91 -0.02 3.54 16 21 C -0.05 -2.54 4.96 84.86 0.42 -2.12 16 22 N -0.93 -54.33 11.14 21.65 0.24 -54.08 16 23 Si 0.97 44.58 29.59 68.60 2.03 46.61 16 24 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 25 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.13 5.30 3.04 45.09 0.14 5.43 16 28 H 0.07 2.73 7.99 -2.38 -0.02 2.71 16 29 C 0.13 5.04 5.63 86.56 0.49 5.52 16 30 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.06 0.94 8.10 -2.39 -0.02 0.92 16 34 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 35 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.41 8.59 7.44 -92.71 -0.69 7.90 16 38 H 0.12 2.05 7.71 -2.38 -0.02 2.03 16 39 H 0.11 2.06 7.93 -2.39 -0.02 2.04 16 40 H 0.12 1.62 5.95 -2.39 -0.01 1.60 16 41 H 0.08 1.75 7.94 -2.39 -0.02 1.73 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 46 H 0.00 0.12 7.17 -2.39 -0.02 0.10 16 47 H 0.07 3.51 6.12 -2.39 -0.01 3.50 16 48 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.05 2.28 6.57 -2.39 -0.02 2.26 16 50 H 0.05 2.29 7.00 -2.39 -0.02 2.27 16 Total: -1.00 -72.81 390.38 0.56 -72.25 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.25 Total: 22.64 kcal Atomic # 6 Polarization: 27.14 SS G_CDS: 6.38 Total: 33.52 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.58 Total: -123.06 kcal Atomic # 8 Polarization: -50.43 SS G_CDS: -1.52 Total: -51.96 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.81 0.56 -72.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176943370.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.450 kcal (2) G-P(sol) polarization free energy of solvation -72.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds