Wall clock time and date at job start Tue Mar 31 2020 22:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47061 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47111 * 180.02562 * 4 3 2 6 6 C 1.37092 * 119.99830 * 270.00154 * 5 4 3 7 7 H 1.08009 * 120.00086 * 145.30682 * 6 5 4 8 8 C 1.38947 * 120.00032 * 325.30074 * 6 5 4 9 9 N 1.31406 * 120.00373 * 337.27761 * 8 6 5 10 10 Si 1.86804 * 120.00108 * 157.27242 * 8 6 5 11 11 H 1.48510 * 109.46816 * 60.00353 * 10 8 6 12 12 H 1.48496 * 109.47371 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47366 * 300.00566 * 10 8 6 14 14 C 1.34783 * 119.99834 * 90.00032 * 5 4 3 15 15 O 1.21285 * 120.00231 * 4.88226 * 14 5 4 16 16 C 1.50702 * 119.99437 * 184.88927 * 14 5 4 17 17 C 1.52998 * 109.46788 * 177.72394 * 16 14 5 18 18 C 1.50701 * 109.47310 * 179.97438 * 17 16 14 19 19 O 1.21283 * 119.99886 * 0.27043 * 18 17 16 20 20 N 1.34775 * 120.00180 * 180.02562 * 18 17 16 21 21 C 1.46072 * 118.73018 * 179.97438 * 20 18 17 22 22 C 1.53224 * 109.72215 * 116.15888 * 21 20 18 23 23 N 1.46926 * 108.82346 * 81.59649 * 22 21 20 24 24 C 1.33628 * 120.62043 * 288.06390 * 23 22 21 25 25 O 1.21286 * 119.76673 * 180.26448 * 24 23 22 26 26 C 1.51187 * 120.46496 * 0.28718 * 24 23 22 27 27 C 1.46160 * 118.73321 * 359.72599 * 20 18 17 28 28 H 1.09004 * 109.47078 * 299.99645 * 1 2 3 29 29 H 1.09001 * 109.47099 * 59.99633 * 1 2 3 30 30 H 1.09000 * 109.47563 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47405 * 239.99873 * 2 1 3 32 32 H 1.09006 * 109.47231 * 119.99895 * 2 1 3 33 33 H 1.09004 * 109.46821 * 60.00198 * 3 2 1 34 34 H 1.08993 * 109.47135 * 300.00291 * 3 2 1 35 35 H 1.08994 * 109.47544 * 59.99865 * 4 3 2 36 36 H 1.09006 * 109.47218 * 299.99810 * 4 3 2 37 37 H 0.96996 * 120.00824 * 185.01015 * 9 8 6 38 38 H 1.08998 * 109.47460 * 57.72159 * 16 14 5 39 39 H 1.08997 * 109.47169 * 297.71837 * 16 14 5 40 40 H 1.08998 * 109.47312 * 59.99674 * 17 16 14 41 41 H 1.09005 * 109.47300 * 299.99281 * 17 16 14 42 42 H 1.08999 * 109.43027 * 236.23015 * 21 20 18 43 43 H 1.08991 * 109.43062 * 356.13456 * 21 20 18 44 44 H 1.09002 * 109.57558 * 201.39567 * 22 21 20 45 45 H 1.08997 * 109.57990 * 321.66021 * 22 21 20 46 46 H 0.96996 * 119.68771 * 108.03974 * 23 22 21 47 47 H 1.09006 * 109.61565 * 190.97219 * 26 24 23 48 48 H 1.09002 * 109.61312 * 311.31802 * 26 24 23 49 49 H 1.09000 * 109.46096 * 3.70605 * 27 20 18 50 50 H 1.09005 * 109.46290 * 123.67093 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2863 3.4707 -1.1870 7 1 4.0963 4.5307 -1.2695 8 6 4.7618 2.7627 -2.2840 9 7 5.4055 1.6309 -2.1068 10 14 4.4858 3.4197 -4.0107 11 1 5.1247 4.7540 -4.1406 12 1 5.0848 2.4855 -4.9974 13 1 3.0282 3.5417 -4.2669 14 6 4.2834 3.4584 1.1675 15 8 4.1671 2.8593 2.2157 16 6 4.6796 4.9124 1.1705 17 6 4.8177 5.4003 2.6140 18 6 5.2144 6.8541 2.6171 19 8 5.3665 7.4435 1.5680 20 7 5.3954 7.5008 3.7856 21 6 5.7803 8.9096 3.7562 22 6 4.6733 9.7613 4.3862 23 7 4.8171 9.7201 5.8478 24 6 4.5157 8.6115 6.5303 25 8 4.6356 8.5961 7.7371 26 6 4.0269 7.3761 5.8087 27 6 5.1937 6.7669 5.0334 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 5.8006 1.1736 -2.8655 38 1 3.9150 5.4983 0.6605 39 1 5.6323 5.0305 0.6544 40 1 5.5823 4.8143 3.1240 41 1 3.8649 5.2823 3.1302 42 1 6.7051 9.0446 4.3172 43 1 5.9338 9.2221 2.7234 44 1 4.7625 10.7908 4.0393 45 1 3.6994 9.3631 4.1016 46 1 5.1341 10.5048 6.3217 47 1 3.6521 6.6532 6.5335 48 1 3.2293 7.6479 5.1172 49 1 4.9729 5.7233 4.8093 50 1 6.0982 6.8246 5.6390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180267861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:34 Heat of formation + Delta-G solvation = -115.087492 kcal Electronic energy + Delta-G solvation = -30226.740832 eV Core-core repulsion = 26060.673572 eV Total energy + Delta-G solvation = -4166.067259 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.85497 -39.48401 -38.52039 -36.63780 -35.44072 -34.89603 -33.91374 -32.43638 -31.69901 -31.48438 -29.14461 -28.34959 -25.52555 -24.92235 -24.76127 -23.15962 -21.97532 -20.41510 -20.33624 -19.21213 -18.88546 -17.79281 -17.43485 -16.96327 -16.37167 -16.14778 -15.75240 -15.64640 -15.07884 -14.71665 -14.62345 -14.34650 -14.19007 -14.06234 -13.59226 -13.52002 -13.07803 -13.03992 -12.70277 -12.44278 -12.39438 -12.23939 -12.21942 -12.01853 -11.89227 -11.86128 -11.38659 -11.27698 -11.13945 -10.87938 -10.61632 -10.51435 -10.48282 -10.31904 -10.19705 -10.10981 -9.71846 -9.68605 -9.64541 -9.11438 -8.85486 -8.41906 -7.48798 -6.37686 -4.03154 2.31319 2.66638 2.78130 2.94233 3.13207 3.21308 3.23934 3.89664 4.11096 4.13635 4.40886 4.59366 4.65390 4.73399 4.77459 4.90718 4.93618 4.98370 5.05163 5.31609 5.44028 5.47922 5.48683 5.55089 5.58521 5.59401 5.65792 5.66884 6.00996 6.07540 6.24068 6.27701 6.31526 6.38860 6.43149 6.44895 6.52236 6.62161 6.72884 6.74720 6.83085 6.88007 7.14102 7.17487 7.37912 7.54092 7.89661 7.95438 8.17862 8.38375 9.07425 9.51972 9.95031 10.63866 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.002694 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.913241 B =10392.530635 C =11874.610459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.120 4.120 3 C -0.126 4.126 4 C 0.109 3.891 5 N -0.435 5.435 6 C -0.343 4.343 7 H 0.092 0.908 8 C 0.046 3.954 9 N -0.859 5.859 10 Si 0.913 3.087 11 H -0.271 1.271 12 H -0.284 1.284 13 H -0.272 1.272 14 C 0.467 3.533 15 O -0.613 6.613 16 C -0.103 4.103 17 C -0.122 4.122 18 C 0.513 3.487 19 O -0.531 6.531 20 N -0.621 5.621 21 C 0.088 3.912 22 C 0.092 3.908 23 N -0.726 5.726 24 C 0.519 3.481 25 O -0.551 6.551 26 C -0.159 4.159 27 C 0.112 3.888 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.047 0.953 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.049 0.951 34 H 0.059 0.941 35 H 0.107 0.893 36 H 0.054 0.946 37 H 0.271 0.729 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.073 0.927 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.082 0.918 46 H 0.400 0.600 47 H 0.113 0.887 48 H 0.097 0.903 49 H 0.112 0.888 50 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.855 10.730 8.820 14.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.158 4.158 3 C -0.164 4.164 4 C -0.015 4.015 5 N -0.152 5.152 6 C -0.471 4.471 7 H 0.110 0.890 8 C -0.160 4.160 9 N -0.495 5.495 10 Si 0.739 3.261 11 H -0.196 1.196 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.256 3.744 15 O -0.501 6.501 16 C -0.143 4.143 17 C -0.162 4.162 18 C 0.303 3.697 19 O -0.406 6.406 20 N -0.356 5.356 21 C -0.036 4.036 22 C -0.033 4.033 23 N -0.379 5.379 24 C 0.305 3.695 25 O -0.428 6.428 26 C -0.200 4.200 27 C -0.011 4.011 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.117 0.883 45 H 0.101 0.899 46 H 0.236 0.764 47 H 0.131 0.869 48 H 0.115 0.885 49 H 0.130 0.870 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.785 10.361 9.126 14.085 hybrid contribution 0.064 0.736 -0.836 1.115 sum -2.721 11.096 8.290 14.116 Atomic orbital electron populations 1.21757 0.96671 1.00668 1.01452 1.21431 0.94933 0.97795 1.01617 1.21887 0.97944 0.95406 1.01206 1.21475 0.91115 0.85109 1.03756 1.43438 1.55145 1.12060 1.04561 1.19426 1.45416 0.94978 0.87276 0.89027 1.25314 0.94519 0.95974 1.00187 1.69841 1.30255 1.17379 1.32067 0.86222 0.79019 0.78924 0.81934 1.19614 1.20957 1.19773 1.20341 0.80747 0.89193 0.84136 1.90499 1.58652 1.68896 1.32041 1.21080 1.04318 0.94605 0.94320 1.21473 1.03901 0.90394 1.00460 1.21253 0.75571 0.90001 0.82857 1.90693 1.50201 1.68782 1.30968 1.47897 1.70408 1.10915 1.06420 1.21933 0.96897 0.80768 1.03980 1.22212 1.00092 1.01835 0.79181 1.45988 1.68030 1.15371 1.08496 1.20623 0.76475 0.84999 0.87361 1.90765 1.53639 1.83908 1.14518 1.22358 1.00101 0.96110 1.01421 1.21463 0.97432 0.97478 0.84771 0.93117 0.93043 0.93433 0.92227 0.92423 0.93197 0.92272 0.87497 0.92769 0.91883 0.89822 0.88968 0.88349 0.88590 0.90839 0.87114 0.88330 0.89925 0.76370 0.86911 0.88501 0.87031 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 37.15 0.37 -1.69 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.14 16 3 C -0.13 -2.51 5.54 -26.73 -0.15 -2.66 16 4 C 0.11 2.55 5.05 -4.04 -0.02 2.53 16 5 N -0.44 -10.71 2.54 -114.81 -0.29 -11.00 16 6 C -0.34 -8.58 8.72 -14.94 -0.13 -8.71 16 7 H 0.09 2.22 6.95 -52.48 -0.36 1.85 16 8 C 0.05 1.15 4.95 -17.47 -0.09 1.07 16 9 N -0.86 -22.38 11.34 55.50 0.63 -21.75 16 10 Si 0.91 19.35 29.61 -169.99 -5.03 14.32 16 11 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 12 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 13 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 14 C 0.47 10.87 7.63 -10.98 -0.08 10.78 16 15 O -0.61 -15.10 15.54 5.55 0.09 -15.01 16 16 C -0.10 -2.00 3.61 -27.88 -0.10 -2.10 16 17 C -0.12 -1.86 3.26 -27.88 -0.09 -1.95 16 18 C 0.51 7.20 7.63 -10.99 -0.08 7.12 16 19 O -0.53 -9.17 15.18 5.55 0.08 -9.08 16 20 N -0.62 -6.49 2.78 -174.31 -0.48 -6.97 16 21 C 0.09 0.74 6.18 -4.16 -0.03 0.72 16 22 C 0.09 0.58 6.48 -3.69 -0.02 0.55 16 23 N -0.73 -5.38 5.30 -59.99 -0.32 -5.69 16 24 C 0.52 5.28 7.11 -11.26 -0.08 5.20 16 25 O -0.55 -7.86 17.91 5.55 0.10 -7.76 16 26 C -0.16 -1.34 5.58 -27.76 -0.15 -1.49 16 27 C 0.11 1.00 5.96 -4.35 -0.03 0.97 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.11 2.68 5.36 -51.93 -0.28 2.40 16 36 H 0.05 1.32 7.36 -51.93 -0.38 0.94 16 37 H 0.27 6.68 8.32 -40.82 -0.34 6.34 16 38 H 0.08 1.62 7.64 -51.93 -0.40 1.22 16 39 H 0.09 1.91 8.05 -51.93 -0.42 1.49 16 40 H 0.10 1.47 7.60 -51.93 -0.39 1.07 16 41 H 0.10 1.35 7.77 -51.93 -0.40 0.95 16 42 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 43 H 0.11 1.06 6.78 -51.93 -0.35 0.71 16 44 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.08 0.57 7.04 -51.93 -0.37 0.20 16 46 H 0.40 2.49 8.91 -40.82 -0.36 2.13 16 47 H 0.11 0.89 8.13 -51.93 -0.42 0.47 16 48 H 0.10 0.75 7.09 -51.93 -0.37 0.38 16 49 H 0.11 0.99 5.57 -51.93 -0.29 0.70 16 50 H 0.08 0.66 7.95 -51.93 -0.41 0.24 16 LS Contribution 398.83 15.07 6.01 6.01 Total: -1.00 -32.42 398.83 -8.21 -40.63 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.15 Total: 8.10 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.85 Total: 8.21 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.46 Total: -45.41 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: 0.27 Total: -31.85 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.42 -8.21 -40.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180267861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.458 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds