Wall clock time and date at job start Tue Mar 31 2020 22:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53004 * 109.47188 * 2 1 4 4 C 1.53000 * 109.47061 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47111 * 180.02562 * 4 3 2 6 6 C 1.37092 * 119.99830 * 270.00154 * 5 4 3 7 7 H 1.08009 * 120.00086 * 145.30682 * 6 5 4 8 8 C 1.38947 * 120.00032 * 325.30074 * 6 5 4 9 9 N 1.31406 * 120.00373 * 337.27761 * 8 6 5 10 10 Si 1.86804 * 120.00108 * 157.27242 * 8 6 5 11 11 H 1.48510 * 109.46816 * 60.00353 * 10 8 6 12 12 H 1.48496 * 109.47371 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.47366 * 300.00566 * 10 8 6 14 14 C 1.34783 * 119.99834 * 90.00032 * 5 4 3 15 15 O 1.21285 * 120.00231 * 4.88226 * 14 5 4 16 16 C 1.50702 * 119.99437 * 184.88927 * 14 5 4 17 17 C 1.52998 * 109.46788 * 177.72394 * 16 14 5 18 18 C 1.50701 * 109.47310 * 179.97438 * 17 16 14 19 19 O 1.21283 * 119.99886 * 0.27043 * 18 17 16 20 20 N 1.34775 * 120.00180 * 180.02562 * 18 17 16 21 21 C 1.46072 * 118.73018 * 179.97438 * 20 18 17 22 22 C 1.53224 * 109.72215 * 116.15888 * 21 20 18 23 23 N 1.46926 * 108.82346 * 81.59649 * 22 21 20 24 24 C 1.33628 * 120.62043 * 288.06390 * 23 22 21 25 25 O 1.21286 * 119.76673 * 180.26448 * 24 23 22 26 26 C 1.51187 * 120.46496 * 0.28718 * 24 23 22 27 27 C 1.46160 * 118.73321 * 359.72599 * 20 18 17 28 28 H 1.09004 * 109.47078 * 299.99645 * 1 2 3 29 29 H 1.09001 * 109.47099 * 59.99633 * 1 2 3 30 30 H 1.09000 * 109.47563 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47405 * 239.99873 * 2 1 3 32 32 H 1.09006 * 109.47231 * 119.99895 * 2 1 3 33 33 H 1.09004 * 109.46821 * 60.00198 * 3 2 1 34 34 H 1.08993 * 109.47135 * 300.00291 * 3 2 1 35 35 H 1.08994 * 109.47544 * 59.99865 * 4 3 2 36 36 H 1.09006 * 109.47218 * 299.99810 * 4 3 2 37 37 H 0.96996 * 120.00824 * 185.01015 * 9 8 6 38 38 H 1.08998 * 109.47460 * 57.72159 * 16 14 5 39 39 H 1.08997 * 109.47169 * 297.71837 * 16 14 5 40 40 H 1.08998 * 109.47312 * 59.99674 * 17 16 14 41 41 H 1.09005 * 109.47300 * 299.99281 * 17 16 14 42 42 H 1.08999 * 109.43027 * 236.23015 * 21 20 18 43 43 H 1.08991 * 109.43062 * 356.13456 * 21 20 18 44 44 H 1.09002 * 109.57558 * 201.39567 * 22 21 20 45 45 H 1.08997 * 109.57990 * 321.66021 * 22 21 20 46 46 H 0.96996 * 119.68771 * 108.03974 * 23 22 21 47 47 H 1.09006 * 109.61565 * 190.97219 * 26 24 23 48 48 H 1.09002 * 109.61312 * 311.31802 * 26 24 23 49 49 H 1.09000 * 109.46096 * 3.70605 * 27 20 18 50 50 H 1.09005 * 109.46290 * 123.67093 * 27 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2863 3.4707 -1.1870 7 1 4.0963 4.5307 -1.2695 8 6 4.7618 2.7627 -2.2840 9 7 5.4055 1.6309 -2.1068 10 14 4.4858 3.4197 -4.0107 11 1 5.1247 4.7540 -4.1406 12 1 5.0848 2.4855 -4.9974 13 1 3.0282 3.5417 -4.2669 14 6 4.2834 3.4584 1.1675 15 8 4.1671 2.8593 2.2157 16 6 4.6796 4.9124 1.1705 17 6 4.8177 5.4003 2.6140 18 6 5.2144 6.8541 2.6171 19 8 5.3665 7.4435 1.5680 20 7 5.3954 7.5008 3.7856 21 6 5.7803 8.9096 3.7562 22 6 4.6733 9.7613 4.3862 23 7 4.8171 9.7201 5.8478 24 6 4.5157 8.6115 6.5303 25 8 4.6356 8.5961 7.7371 26 6 4.0269 7.3761 5.8087 27 6 5.1937 6.7669 5.0334 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8899 35 1 3.9329 0.9288 -0.8908 36 1 3.9337 0.9285 0.8892 37 1 5.8006 1.1736 -2.8655 38 1 3.9150 5.4983 0.6605 39 1 5.6323 5.0305 0.6544 40 1 5.5823 4.8143 3.1240 41 1 3.8649 5.2823 3.1302 42 1 6.7051 9.0446 4.3172 43 1 5.9338 9.2221 2.7234 44 1 4.7625 10.7908 4.0393 45 1 3.6994 9.3631 4.1016 46 1 5.1341 10.5048 6.3217 47 1 3.6521 6.6532 6.5335 48 1 3.2293 7.6479 5.1172 49 1 4.9729 5.7233 4.8093 50 1 6.0982 6.8246 5.6390 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180267861.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:33 Heat of formation + Delta-G solvation = -136.111308 kcal Electronic energy + Delta-G solvation = -30227.652493 eV Core-core repulsion = 26060.673572 eV Total energy + Delta-G solvation = -4166.978920 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.75590 -40.66651 -40.14387 -37.59122 -37.18280 -35.70221 -35.52084 -33.75461 -33.37373 -32.58581 -30.30483 -29.55073 -26.98171 -26.49893 -25.68747 -24.30817 -23.22695 -21.90720 -21.08878 -20.92267 -20.02197 -18.99705 -18.30676 -18.09258 -17.87244 -17.29988 -17.02711 -16.83061 -16.47014 -16.16183 -16.09717 -15.84028 -15.48564 -15.07798 -14.85805 -14.71081 -14.14575 -14.09917 -13.77297 -13.73202 -13.68602 -13.46306 -13.40480 -13.13632 -13.09781 -13.00587 -12.84575 -12.64231 -12.55289 -12.33302 -12.15312 -12.09465 -11.97596 -11.91706 -11.78467 -11.40106 -10.98647 -10.96787 -10.80992 -10.43512 -10.29865 -9.70961 -9.41344 -8.28488 -6.00234 1.43203 1.49078 1.50960 1.57000 1.57274 1.86881 2.05166 2.29919 2.34023 2.96198 3.09780 3.42734 3.55653 3.91036 3.97116 4.07431 4.09943 4.11787 4.15538 4.21801 4.25313 4.26602 4.33021 4.38256 4.47258 4.60112 4.71854 4.77033 4.83234 4.87169 4.90209 4.90994 4.97313 5.00655 5.03849 5.11725 5.14446 5.21105 5.39064 5.46450 5.48678 5.50479 5.63509 5.81913 6.06547 6.14589 6.22500 6.45645 7.10345 7.14505 7.17415 7.62810 8.05466 8.73544 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013088 B = 0.002694 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.913241 B =10392.530635 C =11874.610459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.113 4.113 4 C 0.110 3.890 5 N -0.450 5.450 6 C -0.358 4.358 7 H 0.096 0.904 8 C 0.007 3.993 9 N -0.890 5.890 10 Si 0.977 3.023 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.266 1.266 14 C 0.456 3.544 15 O -0.630 6.630 16 C -0.092 4.092 17 C -0.114 4.114 18 C 0.520 3.480 19 O -0.567 6.567 20 N -0.610 5.610 21 C 0.084 3.916 22 C 0.099 3.901 23 N -0.713 5.713 24 C 0.516 3.484 25 O -0.597 6.597 26 C -0.152 4.152 27 C 0.111 3.889 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.090 0.910 36 H 0.035 0.965 37 H 0.273 0.727 38 H 0.083 0.917 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.110 0.890 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.408 0.592 47 H 0.119 0.881 48 H 0.108 0.892 49 H 0.114 0.886 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.888 11.969 8.701 15.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.154 4.154 3 C -0.151 4.151 4 C -0.014 4.014 5 N -0.167 5.167 6 C -0.485 4.485 7 H 0.113 0.887 8 C -0.197 4.197 9 N -0.528 5.528 10 Si 0.801 3.199 11 H -0.191 1.191 12 H -0.208 1.208 13 H -0.191 1.191 14 C 0.247 3.753 15 O -0.519 6.519 16 C -0.132 4.132 17 C -0.154 4.154 18 C 0.309 3.691 19 O -0.446 6.446 20 N -0.343 5.343 21 C -0.039 4.039 22 C -0.026 4.026 23 N -0.365 5.365 24 C 0.304 3.696 25 O -0.478 6.478 26 C -0.193 4.193 27 C -0.012 4.012 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.108 0.892 36 H 0.054 0.946 37 H 0.082 0.918 38 H 0.102 0.898 39 H 0.094 0.906 40 H 0.119 0.881 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.120 0.880 44 H 0.150 0.850 45 H 0.100 0.900 46 H 0.245 0.755 47 H 0.137 0.863 48 H 0.126 0.874 49 H 0.132 0.868 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.818 11.635 9.024 15.211 hybrid contribution 0.450 0.346 -0.741 0.934 sum -3.368 11.982 8.283 14.950 Atomic orbital electron populations 1.21709 0.94124 1.02323 1.01814 1.21413 0.97121 0.95229 1.01684 1.21750 0.95297 0.97698 1.00392 1.21440 0.93392 0.84691 1.01861 1.43716 1.55540 1.12445 1.05047 1.19677 1.45731 0.95382 0.87716 0.88663 1.26104 0.93876 0.96163 1.03526 1.69946 1.31119 1.18611 1.33090 0.85232 0.79049 0.78340 0.77285 1.19085 1.20795 1.19097 1.21000 0.80101 0.90656 0.83580 1.90469 1.59284 1.69716 1.32443 1.20943 1.03109 0.92029 0.97118 1.21361 1.04894 0.91530 0.97651 1.20901 0.75493 0.89330 0.83353 1.90685 1.52244 1.69287 1.32410 1.47886 1.68890 1.11770 1.05773 1.22116 0.98234 0.79585 1.03950 1.22268 0.99043 1.03274 0.77981 1.45955 1.66577 1.14926 1.08994 1.20898 0.75998 0.85915 0.86832 1.90750 1.55824 1.84763 1.16468 1.22313 0.99941 0.95605 1.01432 1.21559 0.98085 0.97475 0.84045 0.92706 0.92756 0.91153 0.92323 0.92252 0.93850 0.92983 0.89185 0.94609 0.91760 0.89814 0.90591 0.88097 0.87183 0.89845 0.87986 0.85037 0.89951 0.75484 0.86300 0.87419 0.86820 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 9.91 71.98 0.71 -2.96 16 2 C -0.12 -3.78 5.93 30.59 0.18 -3.60 16 3 C -0.11 -4.54 5.54 30.60 0.17 -4.37 16 4 C 0.11 5.29 5.05 86.38 0.44 5.73 16 5 N -0.45 -22.68 2.54 -635.53 -1.61 -24.30 16 6 C -0.36 -18.12 8.72 84.04 0.73 -17.39 16 7 H 0.10 4.66 6.95 -2.91 -0.02 4.64 16 8 C 0.01 0.33 4.95 84.93 0.42 0.75 16 9 N -0.89 -47.20 11.34 21.66 0.25 -46.95 16 10 Si 0.98 39.55 29.61 68.60 2.03 41.58 16 11 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 12 H -0.28 -11.28 7.11 99.48 0.71 -10.58 16 13 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 14 C 0.46 21.66 7.63 87.66 0.67 22.33 16 15 O -0.63 -31.47 15.54 -3.05 -0.05 -31.51 16 16 C -0.09 -3.61 3.61 29.85 0.11 -3.50 16 17 C -0.11 -3.41 3.26 29.85 0.10 -3.32 16 18 C 0.52 14.12 7.63 87.66 0.67 14.78 16 19 O -0.57 -19.37 15.18 -3.04 -0.05 -19.42 16 20 N -0.61 -11.73 2.78 -823.77 -2.29 -14.02 16 21 C 0.08 1.24 6.18 86.54 0.53 1.78 16 22 C 0.10 0.95 6.48 86.37 0.56 1.51 16 23 N -0.71 -8.90 5.30 -462.73 -2.45 -11.35 16 24 C 0.52 9.69 7.11 87.99 0.63 10.31 16 25 O -0.60 -16.59 17.91 -3.05 -0.05 -16.65 16 26 C -0.15 -2.28 5.58 29.92 0.17 -2.12 16 27 C 0.11 1.79 5.96 86.37 0.52 2.31 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 29 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.09 4.66 5.36 -2.39 -0.01 4.65 16 36 H 0.04 1.80 7.36 -2.38 -0.02 1.79 16 37 H 0.27 13.64 8.32 -92.71 -0.77 12.87 16 38 H 0.08 3.27 7.64 -2.39 -0.02 3.25 16 39 H 0.08 3.23 8.05 -2.39 -0.02 3.21 16 40 H 0.10 2.96 7.60 -2.39 -0.02 2.95 16 41 H 0.11 2.97 7.77 -2.38 -0.02 2.95 16 42 H 0.08 1.11 8.10 -2.39 -0.02 1.09 16 43 H 0.10 1.80 6.78 -2.39 -0.02 1.78 16 44 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 45 H 0.08 0.89 7.04 -2.39 -0.02 0.87 16 46 H 0.41 4.13 8.91 -92.71 -0.83 3.30 16 47 H 0.12 1.69 8.13 -2.38 -0.02 1.67 16 48 H 0.11 1.41 7.09 -2.39 -0.02 1.39 16 49 H 0.11 1.83 5.57 -2.39 -0.01 1.82 16 50 H 0.08 1.28 7.95 -2.38 -0.02 1.26 16 Total: -1.00 -71.19 398.83 2.49 -68.70 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.12 Total: 31.66 kcal Atomic # 6 Polarization: 15.66 SS G_CDS: 6.60 Total: 22.26 kcal Atomic # 7 Polarization: -90.51 SS G_CDS: -6.11 Total: -96.62 kcal Atomic # 8 Polarization: -67.43 SS G_CDS: -0.15 Total: -67.58 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.58 kcal Total: -71.19 2.49 -68.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180267861.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.412 kcal (2) G-P(sol) polarization free energy of solvation -71.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds