Wall clock time and date at job start Tue Mar 31 2020 23:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46874 * 2 1 4 4 C 1.52995 * 109.47170 * 239.99860 * 2 1 3 5 5 O 1.45207 * 109.46799 * 119.99802 * 2 1 3 6 6 C 1.34628 * 116.99958 * 60.00310 * 5 2 1 7 7 O 1.21515 * 120.00574 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99811 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99732 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47381 * 324.99931 * 9 8 6 11 11 C 1.50706 * 109.47187 * 85.00177 * 9 8 6 12 12 H 1.07999 * 119.99515 * 240.00151 * 11 9 8 13 13 C 1.37870 * 120.00176 * 59.99618 * 11 9 8 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.50699 * 109.46939 * 204.99731 * 9 8 6 20 20 O 1.21285 * 120.00039 * 0.02562 * 19 9 8 21 21 N 1.34780 * 120.00249 * 180.02562 * 19 9 8 22 22 C 1.46870 * 120.42261 * 359.71840 * 21 19 9 23 23 C 1.52590 * 107.82055 * 232.94230 * 22 21 19 24 24 N 1.46648 * 110.13663 * 299.43940 * 23 22 21 25 25 C 1.48881 * 108.26438 * 151.74432 * 24 23 22 26 26 C 1.54209 * 85.67488 * 271.77397 * 25 24 23 27 27 C 1.46242 * 114.08789 * 53.86289 * 24 23 22 28 28 H 1.09003 * 110.27990 * 193.88680 * 27 24 23 29 29 C 1.45942 * 120.42848 * 180.02562 * 21 19 9 30 30 H 1.09005 * 109.47303 * 299.99870 * 1 2 3 31 31 H 1.08996 * 109.47107 * 59.99986 * 1 2 3 32 32 H 1.09001 * 109.46867 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46612 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47265 * 299.99917 * 3 2 1 35 35 H 1.09005 * 109.47049 * 59.99975 * 3 2 1 36 36 H 1.09001 * 109.47203 * 299.99767 * 4 2 1 37 37 H 1.08996 * 109.46980 * 60.00077 * 4 2 1 38 38 H 1.09004 * 109.47005 * 180.02562 * 4 2 1 39 39 H 0.96998 * 119.99903 * 359.97438 * 8 6 5 40 40 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.84049 * 352.51439 * 22 21 19 42 42 H 1.09004 * 109.83303 * 113.46905 * 22 21 19 43 43 H 1.08997 * 109.42721 * 179.17057 * 23 22 21 44 44 H 1.09005 * 109.14040 * 59.51639 * 23 22 21 45 45 H 1.09001 * 113.83681 * 157.58448 * 25 24 23 46 46 H 1.09004 * 113.95213 * 25.97805 * 25 24 23 47 47 H 1.09003 * 113.93354 * 220.13539 * 26 25 24 48 48 H 1.08994 * 113.93578 * 88.19816 * 26 25 24 49 49 H 1.09001 * 108.75185 * 266.33263 * 29 21 19 50 50 H 1.09006 * 108.75196 * 24.45208 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5095 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.6739 -4.0667 2.5833 10 1 0.6645 -4.2087 2.1971 11 6 2.6306 -4.9511 1.8257 12 1 2.2646 -5.5911 1.0366 13 6 3.9730 -4.9431 2.1401 14 7 4.4185 -4.1639 3.1014 15 14 5.1588 -6.0387 1.2006 16 1 4.4121 -6.8131 0.1769 17 1 6.1867 -5.1991 0.5344 18 1 5.8204 -6.9755 2.1440 19 6 1.7075 -4.4276 4.0461 20 8 2.0285 -3.5960 4.8686 21 7 1.3808 -5.6743 4.4404 22 6 0.9847 -6.6868 3.4529 23 6 -0.3559 -7.2682 3.8923 24 7 -0.2263 -7.8952 5.2116 25 6 -1.5474 -7.8233 5.8943 26 6 -1.0749 -6.4490 6.4102 27 6 0.3365 -7.0173 6.2369 28 1 0.6330 -7.5982 7.1104 29 6 1.4095 -6.0336 5.8546 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1391 38 1 3.1301 -0.7216 -1.2489 39 1 2.6282 -2.2369 3.0826 40 1 5.3631 -4.1580 3.3223 41 1 0.8821 -6.2254 2.4707 42 1 1.7332 -7.4783 3.4142 43 1 -0.6824 -8.0143 3.1678 44 1 -1.0934 -6.4671 3.9436 45 1 -1.6784 -8.5675 6.6798 46 1 -2.3958 -7.7699 5.2119 47 1 -1.3468 -6.2484 7.4465 48 1 -1.3042 -5.6218 5.7385 49 1 2.3818 -6.4687 6.0858 50 1 1.2830 -5.1286 6.4487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180780667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:10 Heat of formation + Delta-G solvation = -63.354972 kcal Electronic energy + Delta-G solvation = -32099.699737 eV Core-core repulsion = 27935.875768 eV Total energy + Delta-G solvation = -4163.823969 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.95498 -39.84098 -38.50082 -36.38140 -34.63186 -33.99841 -33.43967 -31.86219 -31.47467 -28.89603 -27.13721 -27.10315 -26.99819 -26.19254 -24.01907 -23.38771 -22.29819 -21.34557 -19.51293 -19.23245 -17.83740 -17.41281 -16.90293 -16.12253 -15.69545 -15.66425 -15.53605 -15.22627 -14.92127 -14.52557 -14.22831 -14.09730 -13.84873 -13.75392 -13.57129 -13.14902 -12.95849 -12.91198 -12.41364 -12.21153 -12.08570 -11.85996 -11.71744 -11.51252 -11.50687 -11.38128 -11.30778 -11.13166 -11.06338 -10.95719 -10.79672 -10.76665 -10.59119 -10.58737 -10.15023 -10.01176 -9.69514 -9.22965 -8.96242 -8.48774 -8.24540 -7.85024 -7.70969 -6.27578 -4.41339 3.05728 3.19574 3.27333 3.30441 3.70245 3.88395 3.95734 4.05951 4.26072 4.50600 4.79495 4.94949 5.10217 5.10536 5.12751 5.22869 5.26575 5.30879 5.44014 5.55491 5.57239 5.61161 5.70871 5.72902 5.80713 5.81792 5.92776 5.94911 6.02633 6.10317 6.12165 6.19797 6.22582 6.25476 6.28611 6.30641 6.46097 6.55610 6.61876 6.66517 6.77911 7.19633 7.25851 7.36640 7.62049 7.65944 7.82107 8.28233 8.58162 8.82686 9.26306 9.34758 9.59509 10.75298 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.004090 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.629020 B = 6845.028478 C = 8117.779469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.137 3.863 3 C -0.139 4.139 4 C -0.181 4.181 5 O -0.374 6.374 6 C 0.646 3.354 7 O -0.591 6.591 8 N -0.662 5.662 9 C 0.270 3.730 10 H 0.067 0.933 11 C -0.537 4.537 12 H 0.074 0.926 13 C 0.079 3.921 14 N -0.856 5.856 15 Si 0.897 3.103 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.282 1.282 19 C 0.547 3.453 20 O -0.552 6.552 21 N -0.607 5.607 22 C 0.118 3.882 23 C 0.018 3.982 24 N -0.491 5.491 25 C 0.004 3.996 26 C -0.185 4.185 27 C 0.038 3.962 28 H 0.104 0.896 29 C 0.125 3.875 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.090 0.910 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.093 0.907 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.406 0.594 40 H 0.268 0.732 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.087 0.913 44 H 0.043 0.957 45 H 0.096 0.904 46 H 0.074 0.926 47 H 0.068 0.932 48 H 0.086 0.914 49 H 0.056 0.944 50 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 0.008 0.945 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.099 3.901 3 C -0.196 4.196 4 C -0.238 4.238 5 O -0.289 6.289 6 C 0.398 3.602 7 O -0.483 6.483 8 N -0.318 5.318 9 C 0.166 3.834 10 H 0.085 0.915 11 C -0.575 4.575 12 H 0.092 0.908 13 C -0.129 4.129 14 N -0.490 5.490 15 Si 0.724 3.276 16 H -0.192 1.192 17 H -0.208 1.208 18 H -0.208 1.208 19 C 0.337 3.663 20 O -0.429 6.429 21 N -0.342 5.342 22 C -0.006 4.006 23 C -0.111 4.111 24 N -0.215 5.215 25 C -0.124 4.124 26 C -0.223 4.223 27 C -0.071 4.071 28 H 0.122 0.878 29 C 0.000 4.000 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.111 0.889 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.243 0.757 40 H 0.078 0.922 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.105 0.895 44 H 0.061 0.939 45 H 0.114 0.886 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.104 0.896 49 H 0.074 0.926 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -8.234 -0.297 0.913 8.290 hybrid contribution 0.800 0.387 -0.093 0.894 sum -7.433 0.090 0.820 7.479 Atomic orbital electron populations 1.22496 0.94723 1.05078 1.01444 1.21807 0.93853 0.91192 0.83236 1.21827 1.02092 0.93368 1.02325 1.22488 1.01409 1.03911 0.96000 1.86306 1.72193 1.25177 1.45249 1.18039 0.79465 0.79526 0.83144 1.90755 1.43365 1.70364 1.43772 1.45095 1.52443 1.12162 1.22142 1.18267 0.97013 0.78988 0.89147 0.91510 1.21180 0.92037 1.24447 1.19867 0.90751 1.25086 0.98570 0.94949 0.94315 1.69938 1.15422 1.36156 1.27466 0.86437 0.80869 0.80324 0.79940 1.19243 1.20834 1.20807 1.21119 0.73441 0.80080 0.91676 1.90519 1.47779 1.49238 1.55389 1.47290 1.69843 1.11651 1.05407 1.21723 0.93542 0.91522 0.93808 1.22761 0.98928 0.98050 0.91374 1.67015 1.10621 1.42609 1.01265 1.24060 0.93270 0.96148 0.98963 1.24438 0.96862 0.98572 1.02427 1.22586 0.94106 0.93895 0.96539 0.87845 1.20440 0.97252 0.98088 0.84186 0.92700 0.92030 0.89110 0.91741 0.90863 0.91858 0.88867 0.92166 0.92511 0.75735 0.92241 0.86797 0.91274 0.89496 0.93915 0.88567 0.90709 0.91302 0.89588 0.92560 0.89633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.76 8.37 37.16 0.31 -2.45 16 2 C 0.14 2.27 1.13 -90.62 -0.10 2.16 16 3 C -0.14 -1.80 8.85 37.16 0.33 -1.47 16 4 C -0.18 -2.96 8.37 37.16 0.31 -2.65 16 5 O -0.37 -7.76 9.94 -40.29 -0.40 -8.16 16 6 C 0.65 14.96 8.01 54.06 0.43 15.39 16 7 O -0.59 -14.03 11.54 -19.28 -0.22 -14.26 16 8 N -0.66 -16.05 4.36 -61.01 -0.27 -16.32 16 9 C 0.27 6.42 1.78 -70.23 -0.12 6.29 16 10 H 0.07 1.56 7.09 -51.93 -0.37 1.19 16 11 C -0.54 -13.29 6.63 -34.44 -0.23 -13.52 16 12 H 0.07 1.83 7.52 -52.49 -0.39 1.43 16 13 C 0.08 2.01 5.23 -17.82 -0.09 1.92 16 14 N -0.86 -22.86 11.58 55.43 0.64 -22.22 16 15 Si 0.90 20.27 29.54 -169.99 -5.02 15.25 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.55 12.71 5.93 -10.98 -0.07 12.64 16 20 O -0.55 -14.20 15.30 5.55 0.08 -14.12 16 21 N -0.61 -11.97 3.04 -175.56 -0.53 -12.50 16 22 C 0.12 2.05 5.68 -4.05 -0.02 2.03 16 23 C 0.02 0.26 5.51 -4.17 -0.02 0.23 16 24 N -0.49 -6.79 6.56 -236.29 -1.55 -8.34 16 25 C 0.00 0.04 7.96 -2.95 -0.02 0.02 16 26 C -0.18 -2.24 7.40 -26.08 -0.19 -2.44 16 27 C 0.04 0.53 4.08 -70.11 -0.29 0.24 16 28 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 29 C 0.12 2.16 6.00 -5.59 -0.03 2.12 16 30 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.09 1.63 5.88 -51.93 -0.31 1.33 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.09 1.81 5.88 -51.93 -0.31 1.50 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.41 10.37 7.58 -40.82 -0.31 10.06 16 40 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 41 H 0.11 2.10 4.82 -51.93 -0.25 1.85 16 42 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 43 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.61 6.48 -51.93 -0.34 0.28 16 45 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.07 0.76 7.81 -51.93 -0.41 0.36 16 47 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.09 1.19 7.21 -51.93 -0.37 0.82 16 49 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 50 H 0.09 1.56 7.23 -51.93 -0.38 1.18 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -29.58 385.78 -9.32 -38.90 By element: Atomic # 1 Polarization: 23.48 SS G_CDS: -8.06 Total: 15.42 kcal Atomic # 6 Polarization: 20.34 SS G_CDS: 0.19 Total: 20.53 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -1.71 Total: -59.38 kcal Atomic # 8 Polarization: -36.00 SS G_CDS: -0.54 Total: -36.53 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -29.58 -9.32 -38.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180780667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.455 kcal (2) G-P(sol) polarization free energy of solvation -29.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds