Wall clock time and date at job start Tue Mar 31 2020 23:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46874 * 2 1 4 4 C 1.52995 * 109.47170 * 239.99860 * 2 1 3 5 5 O 1.45207 * 109.46799 * 119.99802 * 2 1 3 6 6 C 1.34628 * 116.99958 * 60.00310 * 5 2 1 7 7 O 1.21515 * 120.00574 * 359.97438 * 6 5 2 8 8 N 1.34781 * 119.99811 * 179.97438 * 6 5 2 9 9 C 1.46500 * 119.99732 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.47381 * 324.99931 * 9 8 6 11 11 C 1.50706 * 109.47187 * 85.00177 * 9 8 6 12 12 H 1.07999 * 119.99515 * 240.00151 * 11 9 8 13 13 C 1.37870 * 120.00176 * 59.99618 * 11 9 8 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 9 16 16 H 1.48495 * 109.47216 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.47389 * 119.99848 * 15 13 11 18 18 H 1.48501 * 109.47057 * 239.99829 * 15 13 11 19 19 C 1.50699 * 109.46939 * 204.99731 * 9 8 6 20 20 O 1.21285 * 120.00039 * 0.02562 * 19 9 8 21 21 N 1.34780 * 120.00249 * 180.02562 * 19 9 8 22 22 C 1.46870 * 120.42261 * 359.71840 * 21 19 9 23 23 C 1.52590 * 107.82055 * 232.94230 * 22 21 19 24 24 N 1.46648 * 110.13663 * 299.43940 * 23 22 21 25 25 C 1.48881 * 108.26438 * 151.74432 * 24 23 22 26 26 C 1.54209 * 85.67488 * 271.77397 * 25 24 23 27 27 C 1.46242 * 114.08789 * 53.86289 * 24 23 22 28 28 H 1.09003 * 110.27990 * 193.88680 * 27 24 23 29 29 C 1.45942 * 120.42848 * 180.02562 * 21 19 9 30 30 H 1.09005 * 109.47303 * 299.99870 * 1 2 3 31 31 H 1.08996 * 109.47107 * 59.99986 * 1 2 3 32 32 H 1.09001 * 109.46867 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.46612 * 179.97438 * 3 2 1 34 34 H 1.08996 * 109.47265 * 299.99917 * 3 2 1 35 35 H 1.09005 * 109.47049 * 59.99975 * 3 2 1 36 36 H 1.09001 * 109.47203 * 299.99767 * 4 2 1 37 37 H 1.08996 * 109.46980 * 60.00077 * 4 2 1 38 38 H 1.09004 * 109.47005 * 180.02562 * 4 2 1 39 39 H 0.96998 * 119.99903 * 359.97438 * 8 6 5 40 40 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 41 41 H 1.09000 * 109.84049 * 352.51439 * 22 21 19 42 42 H 1.09004 * 109.83303 * 113.46905 * 22 21 19 43 43 H 1.08997 * 109.42721 * 179.17057 * 23 22 21 44 44 H 1.09005 * 109.14040 * 59.51639 * 23 22 21 45 45 H 1.09001 * 113.83681 * 157.58448 * 25 24 23 46 46 H 1.09004 * 113.95213 * 25.97805 * 25 24 23 47 47 H 1.09003 * 113.93354 * 220.13539 * 26 25 24 48 48 H 1.08994 * 113.93578 * 88.19816 * 26 25 24 49 49 H 1.09001 * 108.75185 * 266.33263 * 29 21 19 50 50 H 1.09006 * 108.75196 * 24.45208 * 29 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0140 -0.6845 1.1857 6 6 1.6522 -1.9722 1.3384 7 8 0.9509 -2.5095 0.5041 8 7 2.0680 -2.6656 2.4168 9 6 1.6739 -4.0667 2.5833 10 1 0.6645 -4.2087 2.1971 11 6 2.6306 -4.9511 1.8257 12 1 2.2646 -5.5911 1.0366 13 6 3.9730 -4.9431 2.1401 14 7 4.4185 -4.1639 3.1014 15 14 5.1588 -6.0387 1.2006 16 1 4.4121 -6.8131 0.1769 17 1 6.1867 -5.1991 0.5344 18 1 5.8204 -6.9755 2.1440 19 6 1.7075 -4.4276 4.0461 20 8 2.0285 -3.5960 4.8686 21 7 1.3808 -5.6743 4.4404 22 6 0.9847 -6.6868 3.4529 23 6 -0.3559 -7.2682 3.8923 24 7 -0.2263 -7.8952 5.2116 25 6 -1.5474 -7.8233 5.8943 26 6 -1.0749 -6.4490 6.4102 27 6 0.3365 -7.0173 6.2369 28 1 0.6330 -7.5982 7.1104 29 6 1.4095 -6.0336 5.8546 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6767 -1.7489 -1.2492 37 1 1.6767 -0.2074 -2.1391 38 1 3.1301 -0.7216 -1.2489 39 1 2.6282 -2.2369 3.0826 40 1 5.3631 -4.1580 3.3223 41 1 0.8821 -6.2254 2.4707 42 1 1.7332 -7.4783 3.4142 43 1 -0.6824 -8.0143 3.1678 44 1 -1.0934 -6.4671 3.9436 45 1 -1.6784 -8.5675 6.6798 46 1 -2.3958 -7.7699 5.2119 47 1 -1.3468 -6.2484 7.4465 48 1 -1.3042 -5.6218 5.7385 49 1 2.3818 -6.4687 6.0858 50 1 1.2830 -5.1286 6.4487 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180780667.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:09 Heat of formation + Delta-G solvation = -85.415611 kcal Electronic energy + Delta-G solvation = -32100.656358 eV Core-core repulsion = 27935.875768 eV Total energy + Delta-G solvation = -4164.780590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.17493 -41.49637 -40.15806 -38.01763 -36.23343 -35.87246 -34.93689 -33.74427 -32.77029 -30.50379 -28.70423 -28.27837 -28.22422 -27.39257 -25.80742 -24.68327 -23.60243 -22.84060 -21.08245 -20.82695 -19.42192 -18.89491 -18.72048 -17.63993 -17.19517 -17.14740 -17.05854 -16.79076 -16.58760 -15.98059 -15.72655 -15.53099 -15.26881 -15.18073 -14.99619 -14.62277 -14.43738 -14.26987 -13.92870 -13.74063 -13.25130 -13.13432 -12.96357 -12.91584 -12.82656 -12.77290 -12.76232 -12.72870 -12.58198 -12.39199 -12.34161 -12.13959 -12.12745 -11.84055 -11.71100 -11.60526 -11.22608 -11.05492 -10.78954 -10.39474 -9.64474 -9.43413 -9.29722 -8.24154 -6.42345 1.32797 1.40246 1.48381 1.50259 2.02065 2.11098 2.34754 2.36636 2.87103 3.06225 3.51838 3.63800 3.74834 3.87039 3.88401 3.89643 4.04070 4.05012 4.16893 4.36940 4.38608 4.46848 4.55952 4.62613 4.65790 4.67613 4.70564 4.73260 4.81087 4.83023 4.85397 4.90446 4.91223 4.94115 4.98274 5.09018 5.13909 5.32112 5.36693 5.37945 5.42303 5.58954 5.63533 5.75733 5.86614 5.92843 6.08668 6.51266 6.66544 6.92388 7.29471 7.53217 7.75695 8.77459 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011779 B = 0.004090 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.629020 B = 6845.028478 C = 8117.779469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.118 3.882 3 C -0.132 4.132 4 C -0.176 4.176 5 O -0.384 6.384 6 C 0.645 3.355 7 O -0.601 6.601 8 N -0.670 5.670 9 C 0.270 3.730 10 H 0.063 0.937 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.040 3.960 14 N -0.882 5.882 15 Si 0.951 3.049 16 H -0.259 1.259 17 H -0.288 1.288 18 H -0.280 1.280 19 C 0.543 3.457 20 O -0.585 6.585 21 N -0.604 5.604 22 C 0.116 3.884 23 C 0.028 3.972 24 N -0.503 5.503 25 C 0.017 3.983 26 C -0.180 4.180 27 C 0.036 3.964 28 H 0.127 0.873 29 C 0.124 3.876 30 H 0.058 0.942 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.058 0.942 37 H 0.097 0.903 38 H 0.049 0.951 39 H 0.398 0.602 40 H 0.264 0.736 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.109 0.891 44 H 0.041 0.959 45 H 0.121 0.879 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.064 0.936 49 H 0.045 0.955 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.891 -0.501 0.449 9.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.082 3.918 3 C -0.189 4.189 4 C -0.234 4.234 5 O -0.299 6.299 6 C 0.398 3.602 7 O -0.494 6.494 8 N -0.326 5.326 9 C 0.166 3.834 10 H 0.081 0.919 11 C -0.574 4.574 12 H 0.091 0.909 13 C -0.165 4.165 14 N -0.517 5.517 15 Si 0.777 3.223 16 H -0.183 1.183 17 H -0.214 1.214 18 H -0.206 1.206 19 C 0.333 3.667 20 O -0.465 6.465 21 N -0.338 5.338 22 C -0.007 4.007 23 C -0.101 4.101 24 N -0.227 5.227 25 C -0.111 4.111 26 C -0.219 4.219 27 C -0.073 4.073 28 H 0.145 0.855 29 C 0.001 3.999 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.127 0.873 35 H 0.086 0.914 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.068 0.932 39 H 0.233 0.767 40 H 0.073 0.927 41 H 0.118 0.882 42 H 0.081 0.919 43 H 0.127 0.873 44 H 0.060 0.940 45 H 0.139 0.861 46 H 0.105 0.895 47 H 0.107 0.893 48 H 0.083 0.917 49 H 0.064 0.936 50 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -9.572 -0.839 0.396 9.617 hybrid contribution 1.159 0.595 0.012 1.303 sum -8.414 -0.244 0.408 8.427 Atomic orbital electron populations 1.22429 0.93738 1.03576 1.03386 1.22418 0.94949 0.92732 0.81744 1.21861 1.01983 0.90727 1.04333 1.22434 1.00931 1.02346 0.97641 1.86313 1.72331 1.23827 1.47462 1.18091 0.79200 0.80336 0.82622 1.90749 1.43716 1.70987 1.43909 1.45097 1.52667 1.12449 1.22421 1.18246 0.96530 0.78941 0.89703 0.91884 1.21294 0.92302 1.24272 1.19580 0.90902 1.25686 0.99867 0.96012 0.94976 1.70064 1.15260 1.37587 1.28817 0.85594 0.78928 0.78823 0.78954 1.18313 1.21441 1.20606 1.21027 0.73452 0.81045 0.91160 1.90484 1.49600 1.50547 1.55914 1.47344 1.68482 1.10921 1.07014 1.21755 0.95415 0.90589 0.92918 1.22668 0.96445 0.98503 0.92513 1.67072 1.12633 1.42038 1.00942 1.24158 0.92090 0.95599 0.99218 1.24344 0.95528 0.98733 1.03255 1.22634 0.93785 0.93638 0.97257 0.85548 1.20556 0.98417 0.98494 0.82469 0.92301 0.88513 0.92240 0.91992 0.87280 0.91380 0.92314 0.88453 0.93173 0.76722 0.92692 0.88194 0.91881 0.87306 0.94030 0.86091 0.89494 0.89332 0.91747 0.93633 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.12 8.37 71.98 0.60 -4.52 16 2 C 0.12 3.79 1.13 -10.79 -0.01 3.78 16 3 C -0.13 -3.09 8.85 71.98 0.64 -2.45 16 4 C -0.18 -5.62 8.37 71.98 0.60 -5.02 16 5 O -0.38 -16.22 9.94 -55.37 -0.55 -16.77 16 6 C 0.64 30.86 8.01 129.79 1.04 31.90 16 7 O -0.60 -29.48 11.54 19.79 0.23 -29.25 16 8 N -0.67 -33.95 4.36 -577.34 -2.52 -36.47 16 9 C 0.27 13.37 1.78 43.50 0.08 13.45 16 10 H 0.06 3.09 7.09 -2.39 -0.02 3.08 16 11 C -0.54 -27.25 6.63 25.60 0.17 -27.08 16 12 H 0.07 3.65 7.52 -2.91 -0.02 3.63 16 13 C 0.04 2.06 5.23 84.65 0.44 2.51 16 14 N -0.88 -48.59 11.58 21.45 0.25 -48.34 16 15 Si 0.95 42.14 29.54 68.60 2.03 44.16 16 16 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 19 C 0.54 26.30 5.93 87.66 0.52 26.82 16 20 O -0.59 -31.54 15.30 -3.05 -0.05 -31.59 16 21 N -0.60 -24.49 3.04 -827.75 -2.51 -27.00 16 22 C 0.12 4.09 5.68 86.17 0.49 4.58 16 23 C 0.03 0.76 5.51 86.22 0.48 1.23 16 24 N -0.50 -12.77 6.56 -901.48 -5.91 -18.68 16 25 C 0.02 0.32 7.96 85.77 0.68 1.00 16 26 C -0.18 -4.02 7.40 31.07 0.23 -3.79 16 27 C 0.04 0.95 4.08 43.72 0.18 1.13 16 28 H 0.13 2.77 8.14 -2.39 -0.02 2.75 16 29 C 0.12 4.38 6.00 85.68 0.51 4.89 16 30 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.06 2.14 5.88 -2.39 -0.01 2.13 16 33 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 34 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 36 H 0.06 2.29 5.88 -2.39 -0.01 2.28 16 37 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 39 H 0.40 21.35 7.58 -92.71 -0.70 20.64 16 40 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.10 3.79 4.82 -2.39 -0.01 3.77 16 42 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 43 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.04 1.15 6.48 -2.38 -0.02 1.13 16 45 H 0.12 1.73 8.14 -2.39 -0.02 1.72 16 46 H 0.09 1.46 7.81 -2.38 -0.02 1.44 16 47 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 48 H 0.06 1.74 7.21 -2.39 -0.02 1.72 16 49 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.07 2.70 7.23 -2.38 -0.02 2.68 16 Total: -1.00 -66.70 385.78 -2.14 -68.84 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: 0.25 Total: 46.67 kcal Atomic # 6 Polarization: 41.78 SS G_CDS: 6.65 Total: 48.42 kcal Atomic # 7 Polarization: -119.80 SS G_CDS: -10.69 Total: -130.50 kcal Atomic # 8 Polarization: -77.23 SS G_CDS: -0.37 Total: -77.60 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.16 kcal Total: -66.70 -2.14 -68.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180780667.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.578 kcal (2) G-P(sol) polarization free energy of solvation -66.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds