Wall clock time and date at job start Wed Apr 1 2020 00:01:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 H 1.08999 * 109.47285 * 55.00417 * 3 2 1 5 5 O 1.42896 * 109.47239 * 295.00533 * 3 2 1 6 6 C 1.42901 * 114.00208 * 150.00128 * 5 3 2 7 7 C 1.50702 * 109.47106 * 174.99902 * 3 2 1 8 8 O 1.21277 * 119.99736 * 115.00360 * 7 3 2 9 9 N 1.34770 * 120.00296 * 295.00313 * 7 3 2 10 10 C 1.48754 * 126.31931 * 0.07141 * 9 7 3 11 11 C 1.54857 * 104.87765 * 204.88613 * 10 9 7 12 12 C 1.55132 * 101.77156 * 322.52925 * 11 10 9 13 13 H 1.08992 * 113.45325 * 158.34288 * 12 11 10 14 14 C 1.54038 * 108.24161 * 286.06470 * 12 11 10 15 15 N 1.47128 * 106.79703 * 135.88940 * 14 12 11 16 16 C 1.46893 * 110.99856 * 219.11762 * 15 14 12 17 17 C 1.50708 * 109.47119 * 191.53739 * 16 15 14 18 18 O 1.21288 * 119.99784 * 359.97438 * 17 16 15 19 19 N 1.34775 * 120.00091 * 179.97438 * 17 16 15 20 20 C 1.37098 * 119.99696 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00448 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99756 * 180.02562 * 20 19 17 23 23 N 1.31405 * 119.99998 * 180.02562 * 22 20 19 24 24 Si 1.86801 * 120.00052 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47054 * 89.99786 * 24 22 20 26 26 H 1.48500 * 109.47227 * 210.00392 * 24 22 20 27 27 H 1.48501 * 109.47164 * 330.00281 * 24 22 20 28 28 C 1.47056 * 109.21062 * 341.82243 * 15 14 12 29 29 C 1.46727 * 125.59421 * 180.02562 * 9 7 3 30 30 H 1.08995 * 111.30067 * 55.56147 * 29 9 7 31 31 H 1.09005 * 109.47135 * 300.00131 * 1 2 3 32 32 H 1.08996 * 109.47306 * 59.99260 * 1 2 3 33 33 H 1.08995 * 109.46985 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.47012 * 240.00562 * 2 1 3 35 35 H 1.09000 * 109.47504 * 120.00010 * 2 1 3 36 36 H 1.09003 * 109.47065 * 179.97438 * 6 5 3 37 37 H 1.08998 * 109.46773 * 299.99672 * 6 5 3 38 38 H 1.08997 * 109.47184 * 59.99559 * 6 5 3 39 39 H 1.08993 * 110.57831 * 85.91372 * 10 9 7 40 40 H 1.09001 * 110.10250 * 323.61736 * 10 9 7 41 41 H 1.09001 * 110.97143 * 204.40627 * 11 10 9 42 42 H 1.09010 * 111.00284 * 80.66160 * 11 10 9 43 43 H 1.09001 * 109.99199 * 255.21881 * 14 12 11 44 44 H 1.08996 * 110.00083 * 16.50542 * 14 12 11 45 45 H 1.08995 * 109.47722 * 311.53565 * 16 15 14 46 46 H 1.09004 * 109.47643 * 71.54077 * 16 15 14 47 47 H 0.96998 * 119.99989 * 0.02562 * 19 17 16 48 48 H 0.97003 * 120.00223 * 179.97438 * 23 22 20 49 49 H 1.09004 * 109.76314 * 241.59367 * 28 15 14 50 50 H 1.08997 * 109.76239 * 120.87863 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 8 1.6618 2.0815 -1.2209 6 6 1.4558 3.4904 -1.1002 7 6 3.5419 1.4444 0.1239 8 8 4.2249 1.8612 -0.7875 9 7 4.1260 0.9828 1.2473 10 6 3.4285 0.4410 2.4443 11 6 4.4185 0.6608 3.6147 12 6 5.7825 0.3749 2.9334 13 1 6.6295 0.8216 3.4539 14 6 5.9058 -1.1457 2.7204 15 7 6.4282 -1.3435 1.3592 16 6 5.7814 -2.4907 0.7087 17 6 6.5268 -2.8380 -0.5543 18 8 7.5007 -2.1928 -0.8805 19 7 6.1112 -3.8653 -1.3212 20 6 6.7891 -4.1808 -2.4704 21 1 7.6562 -3.6064 -2.7609 22 6 6.3603 -5.2397 -3.2614 23 7 7.0102 -5.5425 -4.3626 24 14 4.8599 -6.2329 -2.7594 25 1 3.6420 -5.6228 -3.3506 26 1 5.0028 -7.6275 -3.2493 27 1 4.7422 -6.2379 -1.2791 28 6 6.2263 -0.1128 0.5800 29 6 5.5706 0.9284 1.4983 30 1 6.0305 1.9093 1.3784 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5137 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.1721 3.9005 -2.0694 37 1 0.6617 3.6808 -0.3782 38 1 2.3767 3.9645 -0.7608 39 1 3.2201 -0.6213 2.3181 40 1 2.5044 0.9916 2.6206 41 1 4.2303 -0.0461 4.4227 42 1 4.3717 1.6873 3.9784 43 1 6.5962 -1.5694 3.4497 44 1 4.9273 -1.6162 2.8168 45 1 5.7933 -3.3459 1.3843 46 1 4.7504 -2.2357 0.4635 47 1 5.3321 -4.3810 -1.0605 48 1 6.7112 -6.2819 -4.9146 49 1 5.5747 -0.3173 -0.2696 50 1 7.1870 0.2610 0.2259 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187143057.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:33 Heat of formation + Delta-G solvation = -120.550110 kcal Electronic energy + Delta-G solvation = -31721.772061 eV Core-core repulsion = 27555.467925 eV Total energy + Delta-G solvation = -4166.304136 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.11915 -40.60610 -39.85891 -38.30399 -36.79362 -35.92738 -34.70156 -33.79597 -33.03212 -31.54903 -29.41066 -28.39056 -27.95290 -26.97652 -25.96050 -24.19143 -22.80597 -22.65814 -21.42049 -21.17581 -20.35266 -20.08465 -18.76547 -17.83396 -17.68569 -17.42077 -16.87922 -16.72100 -16.36292 -16.19367 -16.08731 -15.52882 -15.44233 -15.17572 -14.87642 -14.78364 -14.55037 -14.43940 -14.30491 -14.07533 -13.82644 -13.47454 -13.37019 -13.13491 -12.97025 -12.93283 -12.84585 -12.53615 -12.45211 -12.35610 -12.18193 -12.00121 -11.99318 -11.85677 -11.77249 -11.63741 -11.60763 -11.53884 -10.45861 -10.38222 -10.28041 -9.89114 -9.16360 -8.44236 -6.05694 1.25455 1.32887 1.41616 1.42562 1.76498 1.92430 2.20515 2.62427 2.71958 3.09849 3.14373 3.21039 3.54021 3.59726 3.63028 3.79713 3.80780 4.05807 4.11395 4.14821 4.22803 4.29431 4.32585 4.36205 4.39217 4.42835 4.45084 4.49884 4.51849 4.70330 4.71917 4.75688 4.81062 4.85041 4.99472 5.04888 5.13591 5.14583 5.16720 5.25320 5.32196 5.40170 5.49510 5.84412 5.93291 5.98625 6.13578 6.41768 6.56827 6.84968 7.05157 7.35612 7.94379 8.74033 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010016 B = 0.003893 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2794.871201 B = 7190.531621 C = 8556.249556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.086 3.914 4 H 0.124 0.876 5 O -0.386 6.386 6 C 0.026 3.974 7 C 0.492 3.508 8 O -0.582 6.582 9 N -0.610 5.610 10 C 0.082 3.918 11 C -0.109 4.109 12 C -0.091 4.091 13 H 0.125 0.875 14 C 0.046 3.954 15 N -0.528 5.528 16 C 0.058 3.942 17 C 0.445 3.555 18 O -0.611 6.611 19 N -0.592 5.592 20 C -0.331 4.331 21 H 0.049 0.951 22 C -0.016 4.016 23 N -0.936 5.936 24 Si 0.967 3.033 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.227 1.227 28 C 0.065 3.935 29 C 0.116 3.884 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.104 0.896 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.028 0.972 39 H 0.084 0.916 40 H 0.110 0.890 41 H 0.124 0.876 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.129 0.871 46 H 0.067 0.933 47 H 0.389 0.611 48 H 0.280 0.720 49 H 0.018 0.982 50 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.837 12.591 25.508 35.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.158 4.158 3 C 0.024 3.976 4 H 0.141 0.859 5 O -0.304 6.304 6 C -0.070 4.070 7 C 0.281 3.719 8 O -0.461 6.461 9 N -0.345 5.345 10 C -0.039 4.039 11 C -0.147 4.147 12 C -0.111 4.111 13 H 0.143 0.857 14 C -0.080 4.080 15 N -0.252 5.252 16 C -0.073 4.073 17 C 0.233 3.767 18 O -0.494 6.494 19 N -0.234 5.234 20 C -0.460 4.460 21 H 0.067 0.933 22 C -0.215 4.215 23 N -0.576 5.576 24 Si 0.786 3.214 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.150 1.150 28 C -0.064 4.064 29 C 0.011 3.989 30 H 0.093 0.907 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.123 0.877 36 H 0.113 0.887 37 H 0.094 0.906 38 H 0.047 0.953 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.142 0.858 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.095 0.905 45 H 0.147 0.853 46 H 0.085 0.915 47 H 0.225 0.775 48 H 0.089 0.911 49 H 0.036 0.964 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.359 12.946 24.390 33.723 hybrid contribution -0.336 -0.214 -1.386 1.443 sum -19.695 12.732 23.004 32.851 Atomic orbital electron populations 1.21676 0.92249 1.02980 1.02886 1.21717 0.98983 0.91816 1.03302 1.22249 0.87844 0.97696 0.89773 0.85853 1.87995 1.87831 1.22477 1.32087 1.23009 0.99951 0.79927 1.04124 1.21961 0.92592 0.76728 0.80633 1.90737 1.66599 1.48676 1.40098 1.48981 1.06924 1.61836 1.16797 1.23179 0.97554 1.00200 0.82932 1.22876 0.90292 1.04903 0.96652 1.23175 1.01160 0.94719 0.92000 0.85745 1.23099 1.00602 0.95793 0.88486 1.62655 1.57220 1.02228 1.03108 1.21980 0.95112 0.96683 0.93574 1.21072 0.86797 0.81735 0.87118 1.90545 1.30735 1.53758 1.74411 1.42001 1.28788 1.30548 1.22056 1.18980 1.11662 1.15410 0.99985 0.93300 1.26172 1.02304 0.97991 0.94988 1.69812 1.42346 1.30413 1.15051 0.85348 0.77187 0.77992 0.80880 1.18411 1.19483 1.14960 1.22523 0.98275 0.90352 0.95217 1.22420 0.81699 0.98151 0.96622 0.90686 0.90034 0.93235 0.91280 0.93904 0.87735 0.88729 0.90605 0.95282 0.89744 0.87181 0.85815 0.88798 0.88363 0.90461 0.85301 0.91477 0.77527 0.91077 0.96376 0.93977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.81 71.98 0.71 -1.01 16 2 C -0.12 -2.10 5.54 30.59 0.17 -1.93 16 3 C 0.09 1.74 1.89 29.85 0.06 1.79 16 4 H 0.12 1.43 7.31 -2.39 -0.02 1.41 16 5 O -0.39 -10.02 9.42 -129.99 -1.22 -11.24 16 6 C 0.03 0.48 10.81 113.37 1.23 1.70 16 7 C 0.49 14.08 6.75 87.66 0.59 14.67 16 8 O -0.58 -24.17 16.38 15.97 0.26 -23.91 16 9 N -0.61 -13.15 3.02 -782.65 -2.37 -15.51 16 10 C 0.08 0.75 4.94 86.58 0.43 1.17 16 11 C -0.11 -0.62 6.34 31.96 0.20 -0.42 16 12 C -0.09 -1.31 4.33 -8.94 -0.04 -1.35 16 13 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 14 C 0.05 0.82 5.98 86.61 0.52 1.33 16 15 N -0.53 -16.75 4.81 -896.52 -4.31 -21.05 16 16 C 0.06 1.92 4.97 85.56 0.43 2.34 16 17 C 0.45 22.07 7.43 87.66 0.65 22.72 16 18 O -0.61 -37.32 15.12 -3.06 -0.05 -37.37 16 19 N -0.59 -30.04 5.09 -306.98 -1.56 -31.60 16 20 C -0.33 -20.69 10.16 84.04 0.85 -19.83 16 21 H 0.05 3.65 7.39 -2.91 -0.02 3.63 16 22 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 23 N -0.94 -58.92 13.96 21.66 0.30 -58.62 16 24 Si 0.97 40.34 27.74 68.60 1.90 42.24 16 25 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 27 H -0.23 -7.82 6.52 99.48 0.65 -7.17 16 28 C 0.07 2.40 5.18 86.46 0.45 2.85 16 29 C 0.12 2.91 3.55 45.91 0.16 3.08 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.05 0.77 7.82 -2.39 -0.02 0.75 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.10 1.27 5.55 -2.39 -0.01 1.25 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 0.84 8.08 -2.39 -0.02 0.82 16 38 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.65 6.24 -2.39 -0.01 0.63 16 40 H 0.11 0.37 7.39 -2.39 -0.02 0.35 16 41 H 0.12 0.02 8.08 -2.39 -0.02 0.00 16 42 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 0.95 6.09 -2.39 -0.01 0.94 16 45 H 0.13 3.28 8.06 -2.39 -0.02 3.26 16 46 H 0.07 1.97 7.95 -2.39 -0.02 1.95 16 47 H 0.39 16.22 5.76 -92.71 -0.53 15.68 16 48 H 0.28 16.01 8.31 -92.71 -0.77 15.24 16 49 H 0.02 0.80 6.47 -2.39 -0.02 0.78 16 50 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -99.36 391.39 0.18 -99.18 By element: Atomic # 1 Polarization: 30.89 SS G_CDS: 0.35 Total: 31.24 kcal Atomic # 6 Polarization: 19.78 SS G_CDS: 6.87 Total: 26.65 kcal Atomic # 7 Polarization: -118.85 SS G_CDS: -7.94 Total: -126.79 kcal Atomic # 8 Polarization: -71.51 SS G_CDS: -1.01 Total: -72.52 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.90 Total: 42.24 kcal Total: -99.36 0.18 -99.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187143057.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.369 kcal (2) G-P(sol) polarization free energy of solvation -99.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds