Wall clock time and date at job start Tue Mar 31 2020 22:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52995 * 109.47005 * 2 1 4 4 C 1.53004 * 109.46818 * 119.99903 * 2 1 3 5 5 H 1.08996 * 109.46473 * 185.00136 * 4 2 1 6 6 O 1.42898 * 109.46939 * 304.99704 * 4 2 1 7 7 C 1.50698 * 109.47146 * 64.99801 * 4 2 1 8 8 O 1.21281 * 119.99911 * 245.00107 * 7 4 2 9 9 N 1.34777 * 119.99842 * 64.99751 * 7 4 2 10 10 C 1.46721 * 125.24199 * 0.02659 * 9 7 4 11 11 C 1.54046 * 106.53173 * 160.81731 * 10 9 7 12 12 C 1.53877 * 103.86006 * 28.03353 * 11 10 9 13 13 H 1.09010 * 111.75349 * 96.20715 * 12 11 10 14 14 C 1.53562 * 110.01474 * 220.91984 * 12 11 10 15 15 N 1.47911 * 106.90504 * 118.33741 * 14 12 11 16 16 C 1.46897 * 111.00087 * 211.76126 * 15 14 12 17 17 C 1.50697 * 109.46906 * 189.99805 * 16 15 14 18 18 O 1.21295 * 120.00512 * 0.02562 * 17 16 15 19 19 N 1.34781 * 119.99884 * 180.02562 * 17 16 15 20 20 C 1.37102 * 120.00112 * 180.02562 * 19 17 16 21 21 H 1.08008 * 119.99601 * 359.97438 * 20 19 17 22 22 C 1.38944 * 119.99954 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00272 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99879 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.47023 * 59.99899 * 24 22 20 26 26 H 1.48500 * 109.47109 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47140 * 299.99971 * 24 22 20 28 28 C 1.48333 * 105.71603 * 332.21735 * 15 14 12 29 29 C 1.46783 * 125.23871 * 180.02562 * 9 7 4 30 30 H 1.09001 * 112.61924 * 58.16522 * 29 9 7 31 31 H 1.09002 * 109.46621 * 59.99789 * 1 2 3 32 32 H 1.09000 * 109.47082 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46776 * 300.00194 * 1 2 3 34 34 H 1.08999 * 109.46776 * 239.99806 * 2 1 3 35 35 H 1.09003 * 109.47144 * 180.02562 * 3 2 1 36 36 H 1.09008 * 109.46979 * 299.99303 * 3 2 1 37 37 H 1.08995 * 109.47407 * 59.99748 * 3 2 1 38 38 H 0.96701 * 114.00117 * 60.00626 * 6 4 2 39 39 H 1.09001 * 110.04995 * 41.55129 * 10 9 7 40 40 H 1.08999 * 110.04609 * 280.08338 * 10 9 7 41 41 H 1.09000 * 110.54392 * 146.62553 * 11 10 9 42 42 H 1.08995 * 110.55016 * 269.43500 * 11 10 9 43 43 H 1.08994 * 109.97724 * 237.70248 * 14 12 11 44 44 H 1.09001 * 109.97529 * 358.94241 * 14 12 11 45 45 H 1.08996 * 109.47174 * 310.00221 * 16 15 14 46 46 H 1.09007 * 109.46838 * 70.00123 * 16 15 14 47 47 H 0.96998 * 119.99876 * 0.02562 * 19 17 16 48 48 H 0.97002 * 119.99866 * 179.97438 * 23 22 20 49 49 H 1.09007 * 110.52770 * 157.23368 * 28 15 14 50 50 H 1.09002 * 110.53017 * 279.84543 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 1 3.1263 -0.6443 1.2952 6 8 1.4702 -0.1187 2.4130 7 6 1.6413 -2.1733 1.1890 8 8 0.8659 -2.6236 2.0056 9 7 2.1463 -2.9714 0.2275 10 6 3.0894 -2.5493 -0.8142 11 6 3.7494 -3.8324 -1.3539 12 6 2.6840 -4.9190 -1.1258 13 1 2.0869 -5.0935 -2.0210 14 6 3.3485 -6.2097 -0.6253 15 7 2.7938 -6.4863 0.7177 16 6 3.7864 -7.1541 1.5700 17 6 3.1203 -7.6381 2.8322 18 8 1.9352 -7.4460 3.0046 19 7 3.8416 -8.2844 3.7695 20 6 3.2355 -8.7252 4.9176 21 1 2.1802 -8.5541 5.0711 22 6 3.9792 -9.3910 5.8842 23 7 5.2633 -9.5987 5.6977 24 14 3.1536 -9.9909 7.4488 25 1 2.0743 -10.9504 7.1024 26 1 4.1572 -10.6656 8.3107 27 1 2.5727 -8.8343 8.1767 28 6 2.4163 -5.1650 1.2763 29 6 1.8377 -4.3967 0.0614 30 1 0.7723 -4.5817 -0.0762 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8900 35 1 3.1301 1.4425 -0.0005 36 1 1.6768 1.9563 -0.8901 37 1 1.6767 1.9563 0.8899 38 1 0.5041 -0.1507 2.4396 39 1 3.8463 -1.8906 -0.3885 40 1 2.5564 -2.0379 -1.6157 41 1 3.9710 -3.7308 -2.4163 42 1 4.6556 -4.0614 -0.7932 43 1 3.1173 -7.0336 -1.3005 44 1 4.4279 -6.0724 -0.5618 45 1 4.2120 -8.0032 1.0352 46 1 4.5791 -6.4505 1.8243 47 1 4.7894 -8.4377 3.6319 48 1 5.7825 -10.0633 6.3727 49 1 1.6589 -5.2801 2.0518 50 1 3.2931 -4.6530 1.6729 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187742634.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:57 Heat of formation + Delta-G solvation = -109.437304 kcal Electronic energy + Delta-G solvation = -30998.861731 eV Core-core repulsion = 26833.039482 eV Total energy + Delta-G solvation = -4165.822249 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.12321 -39.46864 -38.03909 -37.10461 -35.84195 -34.17601 -33.78848 -32.20570 -31.20545 -30.35134 -28.44618 -27.65156 -26.90345 -26.38799 -24.23223 -23.33671 -21.33771 -20.96939 -20.54522 -19.47791 -19.05572 -17.90153 -17.76512 -16.83858 -16.66291 -16.10973 -15.84998 -15.45321 -15.20265 -14.62013 -14.54113 -14.35752 -14.06126 -13.95130 -13.59395 -13.49962 -13.27203 -13.12394 -13.04341 -12.61389 -12.57904 -12.48609 -12.19472 -12.12759 -11.89432 -11.77794 -11.52674 -11.45787 -11.35784 -11.26869 -11.07115 -10.98777 -10.82510 -10.75276 -10.69603 -10.38672 -10.15063 -9.60251 -9.42020 -8.83066 -8.44206 -7.94908 -7.87539 -6.35487 -3.75812 2.43047 2.69606 3.25493 3.29996 3.35340 3.90468 3.97179 3.99939 4.08183 4.20260 4.27892 4.31647 4.40400 4.45849 4.53628 4.71716 4.83802 4.93480 5.02126 5.08908 5.13304 5.16343 5.24969 5.29095 5.30458 5.34136 5.42397 5.44488 5.47165 5.55748 5.60126 5.61830 5.74815 5.78867 5.81965 5.85779 5.88977 5.94669 6.04563 6.21550 6.32789 6.54078 7.10875 7.20539 7.22262 7.36967 7.61435 8.00434 8.12768 8.68962 9.25053 9.61115 10.13876 10.82503 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.002719 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.054852 B =10295.985834 C =11503.402568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C -0.142 4.142 4 C 0.101 3.899 5 H 0.121 0.879 6 O -0.534 6.534 7 C 0.498 3.502 8 O -0.517 6.517 9 N -0.610 5.610 10 C 0.098 3.902 11 C -0.127 4.127 12 C -0.103 4.103 13 H 0.097 0.903 14 C 0.041 3.959 15 N -0.490 5.490 16 C 0.039 3.961 17 C 0.445 3.555 18 O -0.573 6.573 19 N -0.567 5.567 20 C -0.296 4.296 21 H 0.102 0.898 22 C 0.021 3.979 23 N -0.905 5.905 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.042 3.958 29 C 0.139 3.861 30 H 0.098 0.902 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.087 0.913 35 H 0.056 0.944 36 H 0.057 0.943 37 H 0.064 0.936 38 H 0.382 0.618 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.047 0.953 45 H 0.090 0.910 46 H 0.048 0.952 47 H 0.391 0.609 48 H 0.271 0.729 49 H 0.104 0.896 50 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.498 19.447 -19.547 27.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.147 4.147 3 C -0.200 4.200 4 C 0.038 3.962 5 H 0.138 0.862 6 O -0.340 6.340 7 C 0.285 3.715 8 O -0.391 6.391 9 N -0.346 5.346 10 C -0.025 4.025 11 C -0.165 4.165 12 C -0.123 4.123 13 H 0.116 0.884 14 C -0.088 4.088 15 N -0.214 5.214 16 C -0.093 4.093 17 C 0.230 3.770 18 O -0.456 6.456 19 N -0.204 5.204 20 C -0.426 4.426 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.546 5.546 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.087 4.087 29 C 0.035 3.965 30 H 0.116 0.884 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.232 0.768 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.096 0.904 43 H 0.100 0.900 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.066 0.934 47 H 0.224 0.776 48 H 0.081 0.919 49 H 0.122 0.878 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.453 19.055 -18.642 26.696 hybrid contribution 0.637 -0.169 0.574 0.874 sum -0.815 18.885 -18.068 26.149 Atomic orbital electron populations 1.21885 0.94386 1.02491 1.02619 1.21859 0.97232 0.97802 0.97786 1.21767 1.01045 0.94721 1.02423 1.21872 0.99730 0.87694 0.86947 0.86173 1.86589 1.26605 1.79215 1.41608 1.21314 0.81201 0.88848 0.80120 1.90797 1.34486 1.75551 1.38301 1.48384 1.45953 1.10421 1.29872 1.22149 0.92002 0.97702 0.90636 1.22581 0.98276 0.93578 1.02096 1.22574 0.96460 0.94988 0.98236 0.88425 1.22939 0.97103 0.96333 0.92384 1.64447 1.36598 1.19421 1.00932 1.22053 0.93139 0.99181 0.94937 1.19702 0.87944 0.84236 0.85138 1.90531 1.15453 1.60384 1.79236 1.41842 1.11239 1.50433 1.16892 1.19653 0.96055 1.32737 0.94139 0.88007 1.25237 0.95481 0.97565 0.99704 1.69605 1.06179 1.42648 1.36217 0.85928 0.78503 0.79010 0.80850 1.19901 1.21016 1.19911 1.23525 1.00406 0.87632 0.97130 1.22412 0.99944 0.79148 0.95003 0.88398 0.91705 0.92287 0.92006 0.89503 0.92446 0.92348 0.91695 0.76816 0.90724 0.91098 0.89510 0.90381 0.89972 0.93458 0.89226 0.93365 0.77595 0.91920 0.87799 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.12 8.58 37.16 0.32 -0.81 16 2 C -0.13 -0.88 2.65 -90.61 -0.24 -1.12 16 3 C -0.14 -0.83 9.09 37.16 0.34 -0.49 16 4 C 0.10 0.99 2.51 -27.88 -0.07 0.92 16 5 H 0.12 1.05 7.63 -51.93 -0.40 0.65 16 6 O -0.53 -6.18 12.43 -55.09 -0.68 -6.86 16 7 C 0.50 6.58 5.98 -10.99 -0.07 6.52 16 8 O -0.52 -9.33 16.30 -14.30 -0.23 -9.56 16 9 N -0.61 -6.91 2.92 -162.80 -0.48 -7.38 16 10 C 0.10 0.70 5.48 -3.38 -0.02 0.68 16 11 C -0.13 -0.88 6.48 -25.73 -0.17 -1.05 16 12 C -0.10 -1.00 3.85 -88.89 -0.34 -1.34 16 13 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 14 C 0.04 0.48 6.24 -2.98 -0.02 0.47 16 15 N -0.49 -8.41 4.92 -232.33 -1.14 -9.56 16 16 C 0.04 0.72 5.21 -4.98 -0.03 0.69 16 17 C 0.44 11.04 7.61 -10.98 -0.08 10.96 16 18 O -0.57 -16.40 14.65 5.54 0.08 -16.31 16 19 N -0.57 -14.96 5.29 -10.96 -0.06 -15.01 16 20 C -0.30 -8.58 9.68 -14.93 -0.14 -8.73 16 21 H 0.10 3.10 7.16 -52.48 -0.38 2.73 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -25.29 13.05 55.50 0.72 -24.56 16 24 Si 0.93 21.84 29.55 -169.99 -5.02 16.81 16 25 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 27 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 28 C 0.04 0.73 4.97 -2.00 -0.01 0.72 16 29 C 0.14 1.84 3.91 -65.76 -0.26 1.58 16 30 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.53 7.38 -51.93 -0.38 0.15 16 33 H 0.06 0.42 6.72 -51.93 -0.35 0.08 16 34 H 0.09 0.50 5.27 -51.93 -0.27 0.23 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.06 0.28 8.14 -51.92 -0.42 -0.14 16 37 H 0.06 0.43 7.82 -51.93 -0.41 0.03 16 38 H 0.38 3.79 6.94 45.56 0.32 4.10 16 39 H 0.07 0.43 7.42 -51.93 -0.39 0.05 16 40 H 0.07 0.37 6.71 -51.93 -0.35 0.02 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.08 0.59 7.33 -51.93 -0.38 0.21 16 43 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.51 6.88 -51.93 -0.36 0.15 16 45 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 46 H 0.05 0.83 7.81 -51.92 -0.41 0.42 16 47 H 0.39 9.80 7.90 -40.82 -0.32 9.48 16 48 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.10 2.34 7.11 -51.92 -0.37 1.98 16 50 H 0.04 0.70 7.70 -51.93 -0.40 0.30 16 LS Contribution 389.34 15.07 5.87 5.87 Total: -1.00 -36.01 389.34 -9.18 -45.18 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -7.35 Total: 11.89 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -0.88 Total: 9.49 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.95 Total: -56.52 kcal Atomic # 8 Polarization: -31.90 SS G_CDS: -0.84 Total: -32.73 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.01 -9.18 -45.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187742634.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.253 kcal (2) G-P(sol) polarization free energy of solvation -36.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds