Wall clock time and date at job start Tue Mar 31 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52997 * 109.47519 * 2 1 4 4 C 1.53006 * 109.46990 * 119.99481 * 2 1 3 5 5 H 1.09002 * 109.47266 * 295.60052 * 4 2 1 6 6 C 1.50696 * 109.47190 * 175.59262 * 4 2 1 7 7 O 1.21277 * 120.00070 * 264.10575 * 6 4 2 8 8 N 1.34781 * 119.99757 * 84.11254 * 6 4 2 9 9 C 1.46502 * 120.00017 * 174.69987 * 8 6 4 10 10 H 1.09003 * 110.77462 * 31.76063 * 9 8 6 11 11 C 1.54329 * 110.85421 * 268.69304 * 9 8 6 12 12 N 1.47016 * 107.26885 * 219.67290 * 11 9 8 13 13 C 1.36934 * 125.65173 * 178.84710 * 12 11 9 14 14 H 1.07997 * 119.99835 * 347.60725 * 13 12 11 15 15 C 1.38809 * 120.00239 * 167.60345 * 13 12 11 16 16 N 1.31615 * 119.99892 * 332.14448 * 15 13 12 17 17 Si 1.86802 * 119.99962 * 152.14074 * 15 13 12 18 18 H 1.48493 * 109.47336 * 0.02562 * 17 15 13 19 19 H 1.48505 * 109.46881 * 239.99828 * 17 15 13 20 20 H 1.48497 * 109.47118 * 120.00366 * 17 15 13 21 21 C 1.47427 * 108.70217 * 358.58291 * 12 11 9 22 22 C 1.54911 * 104.83197 * 24.35675 * 21 12 11 23 23 H 1.09004 * 111.00827 * 81.10043 * 22 21 12 24 24 O 1.42893 * 111.00607 * 204.91764 * 22 21 12 25 25 N 1.46505 * 109.47070 * 55.59307 * 4 2 1 26 26 C 1.46756 * 124.35067 * 235.06071 * 25 4 2 27 27 C 1.54668 * 105.38194 * 162.85401 * 26 25 4 28 28 C 1.54627 * 101.68220 * 25.76564 * 27 26 25 29 29 C 1.34420 * 124.34546 * 55.35945 * 25 4 2 30 30 O 1.21276 * 124.94625 * 0.42501 * 29 25 4 31 31 H 1.08998 * 109.47363 * 303.58590 * 1 2 3 32 32 H 1.09008 * 109.46728 * 63.58376 * 1 2 3 33 33 H 1.08992 * 109.47365 * 183.58214 * 1 2 3 34 34 H 1.09002 * 109.47327 * 239.99377 * 2 1 3 35 35 H 1.08997 * 109.47092 * 181.92798 * 3 2 1 36 36 H 1.09007 * 109.46881 * 301.92392 * 3 2 1 37 37 H 1.08995 * 109.47482 * 61.92265 * 3 2 1 38 38 H 0.96996 * 119.99755 * 354.70016 * 8 6 4 39 39 H 1.09000 * 109.99190 * 100.19306 * 11 9 8 40 40 H 1.09003 * 109.77633 * 339.03235 * 11 9 8 41 41 H 0.97000 * 120.00228 * 354.24884 * 16 15 13 42 42 H 1.09000 * 110.36711 * 143.19510 * 21 12 11 43 43 H 1.08999 * 110.36803 * 265.40958 * 21 12 11 44 44 H 0.96700 * 114.00063 * 298.54490 * 24 22 21 45 45 H 1.08999 * 110.24751 * 281.97974 * 26 25 4 46 46 H 1.08996 * 110.24801 * 43.98649 * 26 25 4 47 47 H 1.08999 * 111.19034 * 267.59301 * 27 26 25 48 48 H 1.08996 * 110.85318 * 143.78831 * 27 26 25 49 49 H 1.08999 * 110.48800 * 216.30769 * 28 27 26 50 50 H 1.09001 * 110.48446 * 93.66777 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 1.2494 5 1 1.7424 -0.1638 2.1376 6 6 3.5429 -0.8165 1.1960 7 8 4.0721 -1.8218 0.7718 8 7 4.2990 0.2156 1.6200 9 6 5.7567 0.0807 1.6775 10 1 6.1144 -0.5870 0.8937 11 6 6.2074 -0.4234 3.0648 12 7 7.4323 0.3088 3.4184 13 6 8.1370 0.1694 4.5841 14 1 7.7047 -0.3675 5.4155 15 6 9.4070 0.7181 4.6973 16 7 10.1546 0.8735 3.6253 17 14 10.0549 1.2361 6.3710 18 1 9.0282 0.9578 7.4071 19 1 10.3618 2.6890 6.3550 20 1 11.2903 0.4727 6.6815 21 6 7.7797 1.2133 2.3073 22 6 6.4411 1.4690 1.5707 23 1 5.8551 2.2343 2.0797 24 8 6.6676 1.8248 0.2054 25 7 1.4668 -2.0684 1.3037 26 6 0.7116 -2.6016 2.4434 27 6 -0.0467 -3.8324 1.8934 28 6 0.8539 -4.2510 0.7082 29 6 1.5701 -2.9768 0.3183 30 8 2.1530 -2.8007 -0.7305 31 1 -0.3634 0.5685 0.8561 32 1 -0.3633 0.4572 -0.9204 33 1 -0.3634 -1.0256 0.0642 34 1 1.8933 -0.5139 -0.8899 35 1 3.1294 1.4426 -0.0346 36 1 1.6488 1.9662 -0.8723 37 1 1.7052 1.9463 0.9067 38 1 3.8780 1.0477 1.8870 39 1 6.4136 -1.4930 3.0237 40 1 5.4294 -0.2219 3.8011 41 1 9.8535 0.5293 2.7699 42 1 8.1855 2.1488 2.6924 43 1 8.4969 0.7359 1.6395 44 1 7.1790 2.6374 0.0903 45 1 1.3923 -2.9000 3.2407 46 1 0.0046 -1.8570 2.8090 47 1 -1.0437 -3.5590 1.5482 48 1 -0.0984 -4.6228 2.6422 49 1 0.2480 -4.6170 -0.1207 50 1 1.5700 -5.0102 1.0228 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199421874.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:48 Heat of formation + Delta-G solvation = -116.215161 kcal Electronic energy + Delta-G solvation = -31611.074489 eV Core-core repulsion = 27444.958331 eV Total energy + Delta-G solvation = -4166.116159 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.07180 -40.76490 -39.50552 -37.49351 -36.94059 -36.76366 -35.75956 -33.70299 -32.66827 -30.36622 -29.39175 -28.42888 -27.99387 -27.70536 -26.15380 -22.99138 -22.69101 -22.41597 -21.86432 -21.70811 -20.11936 -19.71263 -18.78859 -18.40936 -17.90342 -17.18200 -17.10993 -16.58435 -16.18998 -16.08128 -15.71434 -15.56623 -15.37943 -15.12254 -14.86664 -14.60423 -14.43783 -14.29411 -14.07502 -13.99200 -13.81218 -13.67782 -13.42588 -13.30291 -13.27621 -13.01321 -12.68320 -12.55692 -12.35672 -12.18585 -12.02431 -12.01403 -11.86206 -11.83564 -11.75570 -11.73307 -11.29333 -11.00279 -10.63734 -10.61501 -10.24603 -9.66328 -9.17821 -8.41157 -5.41671 1.38237 1.58067 1.59973 1.66284 1.82889 1.85462 2.22754 2.58486 2.86801 3.13848 3.36924 3.40651 3.52263 3.63457 3.72158 3.74995 3.86445 3.87103 3.91790 4.06327 4.16375 4.19348 4.25002 4.30709 4.35226 4.58137 4.65328 4.67633 4.69997 4.77282 4.78742 4.84146 4.85307 4.91131 4.95543 4.97897 5.09738 5.18849 5.23072 5.29790 5.31595 5.36100 5.54646 5.56054 6.18241 6.19936 6.41748 6.69459 6.76077 7.12538 7.28957 7.59768 8.12514 8.91326 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016208 B = 0.002989 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1727.162407 B = 9364.194728 C =10170.656735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.100 4.100 3 C -0.153 4.153 4 C 0.153 3.847 5 H 0.150 0.850 6 C 0.495 3.505 7 O -0.568 6.568 8 N -0.698 5.698 9 C 0.156 3.844 10 H 0.064 0.936 11 C 0.135 3.865 12 N -0.618 5.618 13 C -0.351 4.351 14 H 0.067 0.933 15 C -0.077 4.077 16 N -0.946 5.946 17 Si 1.126 2.874 18 H -0.269 1.269 19 H -0.282 1.282 20 H -0.294 1.294 21 C 0.124 3.876 22 C 0.105 3.895 23 H 0.102 0.898 24 O -0.566 6.566 25 N -0.609 5.609 26 C 0.093 3.907 27 C -0.113 4.113 28 C -0.155 4.155 29 C 0.504 3.496 30 O -0.568 6.568 31 H 0.085 0.915 32 H 0.060 0.940 33 H 0.049 0.951 34 H 0.045 0.955 35 H 0.043 0.957 36 H 0.071 0.929 37 H 0.092 0.908 38 H 0.417 0.583 39 H 0.001 0.999 40 H 0.051 0.949 41 H 0.254 0.746 42 H 0.045 0.955 43 H 0.004 0.996 44 H 0.399 0.601 45 H 0.068 0.932 46 H 0.114 0.886 47 H 0.104 0.896 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.268 0.814 -1.206 28.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.120 4.120 3 C -0.211 4.211 4 C 0.046 3.954 5 H 0.168 0.832 6 C 0.281 3.719 7 O -0.445 6.445 8 N -0.352 5.352 9 C 0.049 3.951 10 H 0.083 0.917 11 C 0.009 3.991 12 N -0.347 5.347 13 C -0.479 4.479 14 H 0.085 0.915 15 C -0.272 4.272 16 N -0.589 5.589 17 Si 0.949 3.051 18 H -0.194 1.194 19 H -0.208 1.208 20 H -0.221 1.221 21 C -0.003 4.003 22 C 0.044 3.956 23 H 0.120 0.880 24 O -0.374 6.374 25 N -0.343 5.343 26 C -0.028 4.028 27 C -0.150 4.150 28 C -0.195 4.195 29 C 0.293 3.707 30 O -0.447 6.447 31 H 0.104 0.896 32 H 0.079 0.921 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.090 0.910 37 H 0.111 0.889 38 H 0.256 0.744 39 H 0.019 0.981 40 H 0.069 0.931 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.022 0.978 44 H 0.249 0.751 45 H 0.086 0.914 46 H 0.132 0.868 47 H 0.122 0.878 48 H 0.131 0.869 49 H 0.127 0.873 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -26.644 0.392 -1.271 26.677 hybrid contribution 0.142 -0.537 -1.101 1.233 sum -26.501 -0.145 -2.372 26.608 Atomic orbital electron populations 1.21684 0.91585 1.02084 1.03269 1.21338 0.98616 0.96611 0.95473 1.21972 1.00743 0.93902 1.04482 1.21072 0.86655 0.84588 1.03085 0.83234 1.21842 0.91430 0.82644 0.75967 1.90750 1.75284 1.32772 1.45695 1.45787 1.05098 1.17108 1.67181 1.21430 0.80972 0.96477 0.96181 0.91748 1.21666 0.89605 0.93774 0.94077 1.44670 1.27918 1.44581 1.17482 1.20134 0.99726 1.38298 0.89747 0.91507 1.27297 0.92164 0.99967 1.07766 1.70864 1.37214 1.49397 1.01418 0.82736 0.75072 0.76606 0.70641 1.19405 1.20789 1.22111 1.22112 0.94954 0.93903 0.89335 1.23053 0.94832 0.95102 0.82603 0.88034 1.86449 1.77705 1.49276 1.23978 1.48184 1.54610 1.12578 1.18937 1.22516 0.95118 0.97822 0.87317 1.22646 0.98506 0.97288 0.96596 1.22385 1.00379 0.94721 1.02020 1.21631 0.78949 0.87181 0.82908 1.90684 1.44771 1.81806 1.27401 0.89641 0.92113 0.93205 0.93636 0.93821 0.91005 0.88897 0.74428 0.98092 0.93078 0.93491 0.93633 0.97806 0.75067 0.91354 0.86754 0.87792 0.86900 0.87289 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.76 9.05 71.98 0.65 -1.11 16 2 C -0.10 -2.05 2.20 -10.79 -0.02 -2.07 16 3 C -0.15 -2.47 8.39 71.98 0.60 -1.87 16 4 C 0.15 3.28 2.26 44.24 0.10 3.38 16 5 H 0.15 1.86 8.07 -2.39 -0.02 1.84 16 6 C 0.50 15.99 6.47 87.65 0.57 16.56 16 7 O -0.57 -25.27 14.11 15.54 0.22 -25.05 16 8 N -0.70 -20.45 4.14 -436.90 -1.81 -22.26 16 9 C 0.16 6.05 3.08 46.18 0.14 6.19 16 10 H 0.06 3.03 7.49 -2.39 -0.02 3.01 16 11 C 0.14 6.06 7.00 86.73 0.61 6.67 16 12 N -0.62 -32.22 3.34 -691.99 -2.31 -34.53 16 13 C -0.35 -20.11 10.05 84.03 0.84 -19.27 16 14 H 0.07 3.79 7.97 -2.91 -0.02 3.76 16 15 C -0.08 -4.39 5.08 84.86 0.43 -3.96 16 16 N -0.95 -58.50 12.79 21.65 0.28 -58.22 16 17 Si 1.13 50.53 30.00 68.60 2.06 52.59 16 18 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 19 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 21 C 0.12 5.83 4.94 86.86 0.43 6.26 16 22 C 0.10 3.72 4.06 31.99 0.13 3.84 16 23 H 0.10 2.97 8.01 -2.38 -0.02 2.95 16 24 O -0.57 -18.53 13.47 -148.98 -2.01 -20.54 16 25 N -0.61 -12.92 1.84 -797.85 -1.47 -14.39 16 26 C 0.09 1.04 7.31 86.90 0.64 1.67 16 27 C -0.11 -0.88 7.19 31.72 0.23 -0.65 16 28 C -0.15 -2.62 6.86 30.59 0.21 -2.41 16 29 C 0.50 14.07 6.40 87.90 0.56 14.63 16 30 O -0.57 -22.53 14.85 15.55 0.23 -22.30 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.05 0.75 7.05 -2.39 -0.02 0.73 16 34 H 0.05 1.40 6.67 -2.39 -0.02 1.38 16 35 H 0.04 0.92 6.28 -2.39 -0.01 0.90 16 36 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.42 8.76 7.51 -92.71 -0.70 8.06 16 39 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 40 H 0.05 2.09 8.03 -2.39 -0.02 2.08 16 41 H 0.25 16.19 5.83 -92.71 -0.54 15.65 16 42 H 0.05 2.26 7.67 -2.39 -0.02 2.24 16 43 H 0.00 0.22 6.86 -2.39 -0.02 0.21 16 44 H 0.40 9.42 9.11 -74.06 -0.67 8.74 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 47 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 48 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 50 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -91.84 392.31 1.12 -90.72 By element: Atomic # 1 Polarization: 26.30 SS G_CDS: -0.19 Total: 26.11 kcal Atomic # 6 Polarization: 21.75 SS G_CDS: 6.12 Total: 27.87 kcal Atomic # 7 Polarization: -124.09 SS G_CDS: -5.31 Total: -129.40 kcal Atomic # 8 Polarization: -66.33 SS G_CDS: -1.56 Total: -67.89 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.06 Total: 52.59 kcal Total: -91.84 1.12 -90.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199421874.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.496 kcal (2) G-P(sol) polarization free energy of solvation -91.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds