Wall clock time and date at job start Tue Mar 31 2020 23:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99861 * 2 1 4 4 C 1.53004 * 109.47228 * 119.99971 * 3 2 1 5 5 O 1.42897 * 109.47467 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.46888 * 239.99687 * 3 2 1 7 7 C 1.50697 * 109.47082 * 55.94142 * 6 3 2 8 8 O 1.21283 * 120.00370 * 5.44760 * 7 6 3 9 9 N 1.34779 * 119.99966 * 185.44499 * 7 6 3 10 10 C 1.46926 * 120.63319 * 359.71805 * 9 7 6 11 11 C 1.53623 * 108.54434 * 126.36673 * 10 9 7 12 12 C 1.53046 * 109.24062 * 54.85905 * 11 10 9 13 13 N 1.46895 * 109.45804 * 178.49240 * 12 11 10 14 14 C 1.46905 * 110.99857 * 275.06626 * 13 12 11 15 15 C 1.50697 * 109.47072 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00180 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99884 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99964 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99887 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99979 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99723 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99850 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46939 * 119.99748 * 22 20 18 25 25 H 1.48502 * 109.46635 * 239.99484 * 22 20 18 26 26 C 1.53045 * 109.53568 * 298.51154 * 12 11 10 27 27 C 1.46926 * 120.62994 * 179.97438 * 9 7 6 28 28 H 1.08006 * 120.00048 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00306 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99972 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46761 * 304.93540 * 4 3 2 32 32 H 1.09002 * 109.46860 * 64.93616 * 4 3 2 33 33 H 1.08991 * 109.47178 * 184.93757 * 4 3 2 34 34 H 0.96704 * 113.99953 * 300.00046 * 5 3 2 35 35 H 1.09003 * 109.47230 * 175.93625 * 6 3 2 36 36 H 1.08996 * 109.47602 * 295.94113 * 6 3 2 37 37 H 1.08998 * 109.58793 * 246.20721 * 10 9 7 38 38 H 1.09005 * 109.58311 * 6.62724 * 10 9 7 39 39 H 1.09002 * 109.63639 * 294.87060 * 11 10 9 40 40 H 1.08999 * 109.42843 * 174.72660 * 11 10 9 41 41 H 1.09003 * 109.44598 * 58.52199 * 12 11 10 42 42 H 1.00904 * 111.00197 * 151.11906 * 13 12 11 43 43 H 1.09001 * 109.47111 * 300.00103 * 14 13 12 44 44 H 1.09004 * 109.46926 * 59.99949 * 14 13 12 45 45 H 0.97005 * 120.00208 * 359.97438 * 17 15 14 46 46 H 0.97005 * 120.00106 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.49641 * 301.41230 * 26 12 11 48 48 H 1.08996 * 109.51915 * 181.32964 * 26 12 11 49 49 H 1.08998 * 109.58758 * 353.37452 * 27 9 7 50 50 H 1.09007 * 109.58777 * 113.65317 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2492 7 6 2.0889 1.2063 -2.4776 8 8 0.8831 1.1297 -2.3719 9 7 2.6648 1.1307 -3.6938 10 6 4.1237 1.2281 -3.8386 11 6 4.6190 0.0066 -4.6275 12 6 3.8604 -0.0786 -5.9540 13 7 4.3557 -1.2245 -6.7283 14 6 5.5484 -0.8594 -7.5044 15 6 6.0262 -2.0570 -8.2843 16 8 5.4321 -3.1112 -8.2014 17 7 7.1145 -1.9571 -9.0731 18 6 7.5489 -3.0465 -9.7830 19 1 7.0193 -3.9849 -9.7098 20 6 8.6712 -2.9436 -10.5959 21 7 9.3157 -1.8019 -10.6845 22 14 9.2635 -4.4282 -11.5626 23 1 8.3714 -5.5838 -11.2910 24 1 9.2405 -4.1150 -13.0140 25 1 10.6497 -4.7659 -11.1509 26 6 2.3657 -0.2574 -5.6782 27 6 1.8453 0.9550 -4.9005 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.3276 1.2407 2.1370 32 1 3.7078 0.6106 1.2061 33 1 3.4205 2.3650 1.2946 34 1 0.5439 2.4030 -0.7659 35 1 3.4327 2.3593 -1.2864 36 1 3.6980 0.6007 -1.2136 37 1 4.3773 2.1415 -4.3766 38 1 4.5886 1.2413 -2.8528 39 1 4.4421 -0.8998 -4.0484 40 1 5.6860 0.1105 -4.8246 41 1 4.0177 0.8386 -6.5216 42 1 3.6337 -1.5950 -7.3279 43 1 5.3002 -0.0526 -8.1940 44 1 6.3356 -0.5288 -6.8267 45 1 7.5899 -1.1141 -9.1391 46 1 10.0990 -1.7299 -11.2522 47 1 2.2100 -1.1612 -5.0892 48 1 1.8285 -0.3417 -6.6228 49 1 0.8066 0.7879 -4.6157 50 1 1.9145 1.8475 -5.5225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200324619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:45 Heat of formation + Delta-G solvation = -101.188111 kcal Electronic energy + Delta-G solvation = -29701.208675 eV Core-core repulsion = 25535.744138 eV Total energy + Delta-G solvation = -4165.464537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86139 -39.04579 -38.22283 -37.28842 -35.16083 -33.90716 -33.24703 -32.19274 -31.31355 -31.17455 -30.93209 -28.56414 -26.77968 -24.69559 -23.82918 -23.31057 -22.47031 -20.92571 -19.88952 -19.40636 -19.08879 -17.91592 -17.67011 -16.95849 -16.56204 -16.13383 -15.95790 -15.36510 -15.23736 -14.90231 -14.67904 -14.52580 -14.19651 -14.07576 -13.87451 -13.63700 -13.52013 -13.05007 -12.88065 -12.76419 -12.52079 -12.43678 -12.29851 -12.22839 -12.05528 -11.91353 -11.64260 -11.51502 -11.41644 -11.24802 -11.11070 -10.95220 -10.59591 -10.37658 -10.36949 -10.25468 -10.12811 -9.55408 -9.38333 -8.94238 -8.49798 -8.13297 -7.99615 -6.45201 -3.85977 2.16576 2.31851 2.65667 3.13821 3.24665 3.31935 3.86606 3.96648 4.00570 4.09940 4.23976 4.36832 4.48658 4.53216 4.61308 4.81214 4.90512 4.95801 5.02387 5.05362 5.12147 5.15671 5.19923 5.21144 5.27126 5.33137 5.40741 5.45828 5.49017 5.54880 5.63956 5.72186 5.77578 5.80681 5.84198 5.91136 5.98535 6.13243 6.21992 6.27367 6.44347 6.62640 7.05621 7.18097 7.45392 7.52284 7.59986 7.86972 8.03169 8.57617 9.14686 9.50697 10.02016 10.72556 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027234 B = 0.001792 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.885238 B =15622.794602 C =15797.506054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.193 4.193 3 C 0.178 3.822 4 C -0.135 4.135 5 O -0.562 6.562 6 C -0.168 4.168 7 C 0.519 3.481 8 O -0.542 6.542 9 N -0.608 5.608 10 C 0.105 3.895 11 C -0.124 4.124 12 C 0.088 3.912 13 N -0.665 5.665 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.135 4.135 27 C 0.115 3.885 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.386 0.614 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.044 0.956 42 H 0.351 0.649 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.077 0.923 48 H 0.076 0.924 49 H 0.094 0.906 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.638 11.575 18.935 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.211 4.211 3 C 0.137 3.863 4 C -0.192 4.192 5 O -0.372 6.372 6 C -0.208 4.208 7 C 0.308 3.692 8 O -0.420 6.420 9 N -0.342 5.342 10 C -0.019 4.019 11 C -0.163 4.163 12 C -0.022 4.022 13 N -0.298 5.298 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.174 4.174 27 C -0.008 4.008 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.127 0.873 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.238 0.762 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.095 0.905 40 H 0.097 0.903 41 H 0.061 0.939 42 H 0.171 0.829 43 H 0.061 0.939 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.113 0.887 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.846 10.734 19.977 25.586 hybrid contribution 0.308 0.125 -2.061 2.088 sum -11.538 10.859 17.916 23.917 Atomic orbital electron populations 1.23643 0.95971 1.01699 0.97326 1.23261 0.96863 0.97842 1.03183 1.19805 0.88080 0.85303 0.93126 1.21716 0.98752 1.02660 0.96121 1.86432 1.50984 1.48718 1.51081 1.22500 0.99940 1.05118 0.93268 1.20606 0.88683 0.75545 0.84353 1.90617 1.14823 1.50782 1.85817 1.48160 1.07683 1.71909 1.06417 1.21964 0.79262 0.99043 1.01594 1.22024 1.00441 0.97807 0.96032 1.21479 0.93385 0.92776 0.94578 1.60086 1.08679 1.30341 1.30677 1.21720 0.94145 0.96309 0.95974 1.19814 0.83843 0.89705 0.84097 1.90527 1.58349 1.30047 1.67793 1.41877 1.24911 1.13564 1.39709 1.19755 1.09804 0.92183 1.21105 0.87867 1.25271 0.96458 0.98151 0.98120 1.69618 1.20140 1.24629 1.39915 0.85796 0.78562 0.81055 0.78919 1.19210 1.20759 1.20726 1.22085 0.95407 0.98971 1.00927 1.21570 0.96300 0.97684 0.85232 0.88073 0.88878 0.87330 0.91484 0.90940 0.91568 0.76184 0.87815 0.87842 0.91012 0.89477 0.90538 0.90345 0.93852 0.82881 0.93912 0.89691 0.77482 0.91911 0.90421 0.90569 0.88731 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 12.63 29.01 0.37 -1.08 16 2 C -0.19 -1.78 7.43 -36.03 -0.27 -2.05 16 3 C 0.18 1.50 1.08 -91.77 -0.10 1.40 16 4 C -0.14 -0.91 8.83 37.16 0.33 -0.58 16 5 O -0.56 -5.75 11.93 -52.36 -0.62 -6.37 16 6 C -0.17 -1.21 3.40 -27.89 -0.09 -1.30 16 7 C 0.52 4.95 7.18 -10.99 -0.08 4.87 16 8 O -0.54 -6.41 11.37 -11.57 -0.13 -6.54 16 9 N -0.61 -5.33 2.97 -172.53 -0.51 -5.84 16 10 C 0.10 0.76 6.37 -3.49 -0.02 0.73 16 11 C -0.12 -1.20 5.60 -26.38 -0.15 -1.35 16 12 C 0.09 0.97 2.45 -67.67 -0.17 0.81 16 13 N -0.67 -10.08 5.93 -107.94 -0.64 -10.72 16 14 C 0.05 0.86 5.96 -4.97 -0.03 0.83 16 15 C 0.44 10.16 7.82 -10.99 -0.09 10.08 16 16 O -0.58 -15.65 15.78 5.55 0.09 -15.56 16 17 N -0.56 -14.05 5.29 -10.96 -0.06 -14.11 16 18 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 19 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.22 13.05 55.50 0.72 -23.50 16 22 Si 0.93 20.85 29.55 -169.99 -5.02 15.82 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 C -0.14 -1.34 5.36 -26.63 -0.14 -1.48 16 27 C 0.11 1.04 6.43 -3.73 -0.02 1.01 16 28 H 0.10 1.01 6.41 -52.48 -0.34 0.67 16 29 H 0.09 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.11 0.92 8.06 -52.49 -0.42 0.50 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.39 3.94 5.78 45.56 0.26 4.21 16 35 H 0.10 0.62 8.11 -51.93 -0.42 0.20 16 36 H 0.10 0.59 7.42 -51.93 -0.39 0.20 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.09 0.47 5.89 -51.93 -0.31 0.16 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 0.77 7.42 -51.93 -0.39 0.38 16 41 H 0.04 0.46 7.80 -51.93 -0.40 0.06 16 42 H 0.35 5.59 8.03 -39.29 -0.32 5.27 16 43 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 44 H 0.08 1.30 7.41 -51.93 -0.38 0.91 16 45 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 49 H 0.09 0.94 7.01 -51.93 -0.36 0.58 16 50 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 LS Contribution 396.82 15.07 5.98 5.98 Total: -1.00 -32.47 396.82 -8.42 -40.89 By element: Atomic # 1 Polarization: 23.50 SS G_CDS: -7.52 Total: 15.98 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.71 Total: 3.97 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.49 Total: -54.17 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.67 Total: -28.48 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.47 -8.42 -40.89 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200324619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.297 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds