Wall clock time and date at job start Tue Mar 31 2020 23:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50699 * 119.99861 * 2 1 4 4 C 1.53004 * 109.47228 * 119.99971 * 3 2 1 5 5 O 1.42897 * 109.47467 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.46888 * 239.99687 * 3 2 1 7 7 C 1.50697 * 109.47082 * 55.94142 * 6 3 2 8 8 O 1.21283 * 120.00370 * 5.44760 * 7 6 3 9 9 N 1.34779 * 119.99966 * 185.44499 * 7 6 3 10 10 C 1.46926 * 120.63319 * 359.71805 * 9 7 6 11 11 C 1.53623 * 108.54434 * 126.36673 * 10 9 7 12 12 C 1.53046 * 109.24062 * 54.85905 * 11 10 9 13 13 N 1.46895 * 109.45804 * 178.49240 * 12 11 10 14 14 C 1.46905 * 110.99857 * 275.06626 * 13 12 11 15 15 C 1.50697 * 109.47072 * 180.02562 * 14 13 12 16 16 O 1.21287 * 120.00180 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99884 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99964 * 180.02562 * 17 15 14 19 19 H 1.07997 * 119.99887 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99979 * 180.02562 * 18 17 15 21 21 N 1.31409 * 119.99723 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99850 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47297 * 359.97438 * 22 20 18 24 24 H 1.48496 * 109.46939 * 119.99748 * 22 20 18 25 25 H 1.48502 * 109.46635 * 239.99484 * 22 20 18 26 26 C 1.53045 * 109.53568 * 298.51154 * 12 11 10 27 27 C 1.46926 * 120.62994 * 179.97438 * 9 7 6 28 28 H 1.08006 * 120.00048 * 359.97438 * 1 2 3 29 29 H 1.07999 * 120.00306 * 180.02562 * 1 2 3 30 30 H 1.07996 * 119.99972 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.46761 * 304.93540 * 4 3 2 32 32 H 1.09002 * 109.46860 * 64.93616 * 4 3 2 33 33 H 1.08991 * 109.47178 * 184.93757 * 4 3 2 34 34 H 0.96704 * 113.99953 * 300.00046 * 5 3 2 35 35 H 1.09003 * 109.47230 * 175.93625 * 6 3 2 36 36 H 1.08996 * 109.47602 * 295.94113 * 6 3 2 37 37 H 1.08998 * 109.58793 * 246.20721 * 10 9 7 38 38 H 1.09005 * 109.58311 * 6.62724 * 10 9 7 39 39 H 1.09002 * 109.63639 * 294.87060 * 11 10 9 40 40 H 1.08999 * 109.42843 * 174.72660 * 11 10 9 41 41 H 1.09003 * 109.44598 * 58.52199 * 12 11 10 42 42 H 1.00904 * 111.00197 * 151.11906 * 13 12 11 43 43 H 1.09001 * 109.47111 * 300.00103 * 14 13 12 44 44 H 1.09004 * 109.46926 * 59.99949 * 14 13 12 45 45 H 0.97005 * 120.00208 * 359.97438 * 17 15 14 46 46 H 0.97005 * 120.00106 * 180.02562 * 21 20 18 47 47 H 1.08994 * 109.49641 * 301.41230 * 26 12 11 48 48 H 1.08996 * 109.51915 * 181.32964 * 26 12 11 49 49 H 1.08998 * 109.58758 * 353.37452 * 27 9 7 50 50 H 1.09007 * 109.58777 * 113.65317 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.9431 1.3862 1.2493 5 8 1.1349 2.3913 -0.0006 6 6 2.9431 1.3861 -1.2492 7 6 2.0889 1.2063 -2.4776 8 8 0.8831 1.1297 -2.3719 9 7 2.6648 1.1307 -3.6938 10 6 4.1237 1.2281 -3.8386 11 6 4.6190 0.0066 -4.6275 12 6 3.8604 -0.0786 -5.9540 13 7 4.3557 -1.2245 -6.7283 14 6 5.5484 -0.8594 -7.5044 15 6 6.0262 -2.0570 -8.2843 16 8 5.4321 -3.1112 -8.2014 17 7 7.1145 -1.9571 -9.0731 18 6 7.5489 -3.0465 -9.7830 19 1 7.0193 -3.9849 -9.7098 20 6 8.6712 -2.9436 -10.5959 21 7 9.3157 -1.8019 -10.6845 22 14 9.2635 -4.4282 -11.5626 23 1 8.3714 -5.5838 -11.2910 24 1 9.2405 -4.1150 -13.0140 25 1 10.6497 -4.7659 -11.1509 26 6 2.3657 -0.2574 -5.6782 27 6 1.8453 0.9550 -4.9005 28 1 -0.5400 0.9354 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 2.3276 1.2407 2.1370 32 1 3.7078 0.6106 1.2061 33 1 3.4205 2.3650 1.2946 34 1 0.5439 2.4030 -0.7659 35 1 3.4327 2.3593 -1.2864 36 1 3.6980 0.6007 -1.2136 37 1 4.3773 2.1415 -4.3766 38 1 4.5886 1.2413 -2.8528 39 1 4.4421 -0.8998 -4.0484 40 1 5.6860 0.1105 -4.8246 41 1 4.0177 0.8386 -6.5216 42 1 3.6337 -1.5950 -7.3279 43 1 5.3002 -0.0526 -8.1940 44 1 6.3356 -0.5288 -6.8267 45 1 7.5899 -1.1141 -9.1391 46 1 10.0990 -1.7299 -11.2522 47 1 2.2100 -1.1612 -5.0892 48 1 1.8285 -0.3417 -6.6228 49 1 0.8066 0.7879 -4.6157 50 1 1.9145 1.8475 -5.5225 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200324619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:44 Heat of formation + Delta-G solvation = -125.202454 kcal Electronic energy + Delta-G solvation = -29702.250015 eV Core-core repulsion = 25535.744138 eV Total energy + Delta-G solvation = -4166.505877 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56488 -40.26546 -39.52017 -38.17033 -36.30480 -35.74685 -33.95653 -33.31831 -32.94686 -31.92333 -31.80583 -29.24521 -28.16323 -26.22416 -24.65901 -24.25555 -23.20062 -21.73200 -21.09272 -20.56451 -19.99402 -19.83335 -18.40733 -17.85991 -17.55663 -17.22684 -16.82147 -16.66680 -16.39189 -16.12941 -15.84609 -15.52375 -15.41244 -15.20799 -14.96560 -14.76423 -14.39503 -13.99929 -13.84959 -13.54709 -13.51784 -13.42749 -13.21421 -13.15665 -13.03418 -12.92349 -12.86102 -12.59464 -12.55964 -12.40531 -12.21812 -12.12075 -11.93667 -11.77653 -11.51923 -11.43658 -11.06716 -10.82683 -10.34289 -10.08588 -10.01676 -9.64632 -9.32706 -8.47340 -5.95758 1.36229 1.41907 1.45359 1.55739 1.62703 2.00358 2.05220 2.28824 2.89637 3.20125 3.33840 3.44086 3.50707 3.76585 3.80852 3.87169 3.89319 4.10179 4.21940 4.28894 4.33092 4.35426 4.40495 4.46273 4.54292 4.59527 4.61749 4.65235 4.68269 4.75108 4.82175 4.86964 4.87805 4.94937 5.03363 5.13952 5.16931 5.30726 5.36992 5.41270 5.53527 5.72160 5.91587 5.91965 6.13829 6.39208 6.39637 6.60066 6.73228 7.12690 7.18052 7.56358 8.11924 8.70134 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.027234 B = 0.001792 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.885238 B =15622.794602 C =15797.506054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.193 4.193 3 C 0.170 3.830 4 C -0.134 4.134 5 O -0.574 6.574 6 C -0.162 4.162 7 C 0.512 3.488 8 O -0.571 6.571 9 N -0.609 5.609 10 C 0.108 3.892 11 C -0.122 4.122 12 C 0.089 3.911 13 N -0.681 5.681 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.333 4.333 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.275 1.275 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.127 4.127 27 C 0.119 3.881 28 H 0.093 0.907 29 H 0.095 0.905 30 H 0.116 0.884 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.383 0.617 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.089 0.911 38 H 0.112 0.888 39 H 0.059 0.941 40 H 0.081 0.919 41 H 0.059 0.941 42 H 0.343 0.657 43 H 0.066 0.934 44 H 0.106 0.894 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.239 12.913 19.370 25.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.211 4.211 3 C 0.129 3.871 4 C -0.191 4.191 5 O -0.385 6.385 6 C -0.201 4.201 7 C 0.302 3.698 8 O -0.451 6.451 9 N -0.342 5.342 10 C -0.014 4.014 11 C -0.160 4.160 12 C -0.021 4.021 13 N -0.313 5.313 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.463 4.463 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.199 1.199 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.166 4.166 27 C -0.004 4.004 28 H 0.111 0.889 29 H 0.114 0.886 30 H 0.134 0.866 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.235 0.765 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.107 0.893 38 H 0.130 0.870 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.077 0.923 42 H 0.162 0.838 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.231 0.769 46 H 0.087 0.913 47 H 0.076 0.924 48 H 0.098 0.902 49 H 0.100 0.900 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -10.423 12.110 20.426 25.933 hybrid contribution -0.175 -0.301 -2.173 2.201 sum -10.598 11.809 18.253 24.186 Atomic orbital electron populations 1.23671 0.96487 1.01519 0.98647 1.23482 0.96830 0.98749 1.02021 1.20042 0.88085 0.84286 0.94652 1.21746 0.98738 1.03809 0.94775 1.86423 1.51424 1.49501 1.51125 1.22508 0.99583 1.06878 0.91169 1.21076 0.88621 0.75006 0.85107 1.90615 1.16226 1.52043 1.86225 1.48248 1.08384 1.71446 1.06087 1.22084 0.78128 0.98346 1.02854 1.21996 1.00480 0.98360 0.95210 1.21603 0.93911 0.91736 0.94802 1.60127 1.08209 1.32589 1.30416 1.21572 0.95318 0.93422 0.96154 1.20956 0.82475 0.91030 0.83138 1.90496 1.59342 1.32467 1.68912 1.41939 1.25747 1.13143 1.40208 1.19681 1.10969 0.92397 1.23233 0.90484 1.26021 0.95981 1.00869 0.98395 1.69668 1.20347 1.25817 1.40151 0.84886 0.78091 0.77555 0.77903 1.19940 1.19590 1.19581 1.21989 0.94993 0.98626 1.00960 1.21490 0.95699 0.97687 0.85531 0.88865 0.88625 0.86585 0.92356 0.88927 0.90896 0.76512 0.85912 0.85804 0.89263 0.87011 0.92249 0.90045 0.92345 0.83775 0.91576 0.87563 0.76898 0.91285 0.92393 0.90184 0.90040 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.28 12.63 67.78 0.86 -2.42 16 2 C -0.19 -3.41 7.43 25.65 0.19 -3.22 16 3 C 0.17 2.60 1.08 -11.54 -0.01 2.59 16 4 C -0.13 -1.50 8.83 71.98 0.64 -0.87 16 5 O -0.57 -11.40 11.93 -132.60 -1.58 -12.98 16 6 C -0.16 -1.88 3.40 29.85 0.10 -1.78 16 7 C 0.51 8.88 7.18 87.66 0.63 9.51 16 8 O -0.57 -13.26 11.37 13.34 0.15 -13.11 16 9 N -0.61 -9.31 2.97 -818.14 -2.43 -11.74 16 10 C 0.11 1.19 6.37 86.51 0.55 1.74 16 11 C -0.12 -2.04 5.60 30.82 0.17 -1.87 16 12 C 0.09 1.78 2.45 44.95 0.11 1.89 16 13 N -0.68 -19.92 5.93 -495.41 -2.94 -22.86 16 14 C 0.07 2.15 5.96 85.56 0.51 2.66 16 15 C 0.44 20.23 7.82 87.66 0.69 20.91 16 16 O -0.63 -34.37 15.78 -3.05 -0.05 -34.41 16 17 N -0.57 -28.77 5.29 -306.99 -1.62 -30.39 16 18 C -0.33 -18.73 9.68 84.04 0.81 -17.91 16 19 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 20 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 21 N -0.92 -48.69 13.05 21.66 0.28 -48.40 16 22 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 26 C -0.13 -2.39 5.36 30.66 0.16 -2.23 16 27 C 0.12 1.98 6.43 86.35 0.55 2.53 16 28 H 0.09 1.95 6.41 -2.91 -0.02 1.93 16 29 H 0.10 1.74 8.06 -2.91 -0.02 1.72 16 30 H 0.12 1.83 8.06 -2.91 -0.02 1.81 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.38 7.88 5.78 -74.05 -0.43 7.45 16 35 H 0.12 1.00 8.11 -2.39 -0.02 0.98 16 36 H 0.12 0.95 7.42 -2.39 -0.02 0.93 16 37 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.11 0.71 5.89 -2.38 -0.01 0.69 16 39 H 0.06 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.08 1.34 7.42 -2.39 -0.02 1.33 16 41 H 0.06 1.04 7.80 -2.39 -0.02 1.02 16 42 H 0.34 10.87 8.03 -89.69 -0.72 10.15 16 43 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 44 H 0.11 2.97 7.41 -2.38 -0.02 2.95 16 45 H 0.40 18.75 7.90 -92.70 -0.73 18.02 16 46 H 0.28 13.73 8.31 -92.70 -0.77 12.95 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 49 H 0.08 1.60 7.01 -2.39 -0.02 1.58 16 50 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -71.63 396.82 -0.64 -72.27 By element: Atomic # 1 Polarization: 46.72 SS G_CDS: -0.91 Total: 45.81 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 6.43 Total: 11.33 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -6.71 Total: -113.39 kcal Atomic # 8 Polarization: -59.03 SS G_CDS: -1.48 Total: -60.51 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -71.63 -0.64 -72.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200324619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.936 kcal (2) G-P(sol) polarization free energy of solvation -71.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds