Wall clock time and date at job start Tue Mar 31 2020 23:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50697 * 120.00346 * 2 1 4 4 C 1.52997 * 109.47466 * 239.99781 * 3 2 1 5 5 O 1.42906 * 109.46831 * 0.02562 * 3 2 1 6 6 C 1.53006 * 109.47239 * 119.99493 * 3 2 1 7 7 C 1.50701 * 109.47180 * 180.02562 * 6 3 2 8 8 O 1.21273 * 119.99897 * 359.97438 * 7 6 3 9 9 N 1.34776 * 119.99804 * 180.02562 * 7 6 3 10 10 C 1.46924 * 120.63280 * 359.71807 * 9 7 6 11 11 C 1.52758 * 109.01112 * 233.58588 * 10 9 7 12 12 C 1.53041 * 109.38128 * 305.58911 * 11 10 9 13 13 N 1.46900 * 109.44618 * 181.25339 * 12 11 10 14 14 C 1.46895 * 111.00268 * 84.93934 * 13 12 11 15 15 C 1.50697 * 109.47495 * 179.97438 * 14 13 12 16 16 O 1.21297 * 119.99959 * 359.97438 * 15 14 13 17 17 N 1.34771 * 120.00261 * 179.97438 * 15 14 13 18 18 C 1.37097 * 120.00140 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99879 * 359.97438 * 18 17 15 20 20 C 1.38949 * 119.99984 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00341 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 120.00027 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46795 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47172 * 119.99746 * 22 20 18 25 25 H 1.48497 * 109.47293 * 240.00098 * 22 20 18 26 26 C 1.53035 * 109.53879 * 61.24006 * 12 11 10 27 27 C 1.46921 * 120.62849 * 179.97438 * 9 7 6 28 28 H 1.07999 * 119.99739 * 0.02562 * 1 2 3 29 29 H 1.07999 * 119.99918 * 179.97438 * 1 2 3 30 30 H 1.08007 * 120.00185 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47153 * 59.99773 * 4 3 2 32 32 H 1.09001 * 109.46832 * 299.99964 * 4 3 2 33 33 H 1.09004 * 109.47261 * 179.97438 * 4 3 2 34 34 H 0.96693 * 114.00047 * 60.00191 * 5 3 2 35 35 H 1.09000 * 109.47050 * 300.00336 * 6 3 2 36 36 H 1.09001 * 109.47002 * 60.00070 * 6 3 2 37 37 H 1.09008 * 109.58457 * 353.42286 * 10 9 7 38 38 H 1.09003 * 109.58705 * 113.84144 * 10 9 7 39 39 H 1.09000 * 109.56587 * 185.54777 * 11 10 9 40 40 H 1.09001 * 109.38354 * 65.51188 * 11 10 9 41 41 H 1.08998 * 109.45707 * 301.21577 * 12 11 10 42 42 H 1.00896 * 111.00183 * 320.98351 * 13 12 11 43 43 H 1.09004 * 109.47215 * 299.99535 * 14 13 12 44 44 H 1.08999 * 109.47639 * 59.99646 * 14 13 12 45 45 H 0.97006 * 120.00491 * 359.97438 * 17 15 14 46 46 H 0.96994 * 119.99844 * 179.97438 * 21 20 18 47 47 H 1.08999 * 109.49930 * 178.68370 * 26 12 11 48 48 H 1.09003 * 109.52650 * 58.60204 * 26 12 11 49 49 H 1.08996 * 109.58959 * 246.15063 * 27 9 7 50 50 H 1.08993 * 109.58883 * 6.44054 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.9432 1.3861 -1.2492 5 8 1.1349 2.3912 0.0006 6 6 2.9431 1.3861 1.2493 7 6 3.6962 2.6915 1.2497 8 8 3.5448 3.4791 0.3400 9 7 4.5388 2.9830 2.2603 10 6 4.7290 2.0412 3.3718 11 6 4.4802 2.7710 4.6906 12 6 5.3713 4.0133 4.7595 13 7 5.1551 4.6998 6.0401 14 6 5.9913 4.1168 7.0977 15 6 5.7433 4.8454 8.3933 16 8 4.9484 5.7609 8.4317 17 7 6.4046 4.4800 9.5093 18 6 6.1786 5.1426 10.6880 19 1 5.4708 5.9577 10.7222 20 6 6.8600 4.7655 11.8387 21 7 7.7208 3.7734 11.7973 22 14 6.5526 5.6688 13.4447 23 1 5.5456 6.7382 13.2261 24 1 6.0467 4.7123 14.4617 25 1 7.8214 6.2745 13.9227 26 6 5.0208 4.9590 3.6085 27 6 5.2804 4.2513 2.2743 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 -0.0004 30 1 1.8501 -0.9354 0.0004 31 1 2.3166 1.3283 -2.1392 32 1 3.6515 0.5575 -1.2491 33 1 3.4880 2.3303 -1.2494 34 1 0.5440 2.4030 0.7658 35 1 2.3164 1.3284 2.1393 36 1 3.6514 0.5576 1.2494 37 1 4.0251 1.2145 3.2748 38 1 5.7495 1.6585 3.3560 39 1 4.7141 2.1087 5.5241 40 1 3.4336 3.0704 4.7465 41 1 6.4166 3.7152 4.6792 42 1 4.1802 4.6829 6.2994 43 1 5.7407 3.0629 7.2196 44 1 7.0421 4.2110 6.8237 45 1 7.0400 3.7477 9.4788 46 1 8.1968 3.5105 12.6005 47 1 5.6397 5.8541 3.6718 48 1 3.9693 5.2384 3.6738 49 1 6.3467 4.0523 2.1675 50 1 4.9421 4.8815 1.4520 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200324625.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:07:49 Heat of formation + Delta-G solvation = -97.435855 kcal Electronic energy + Delta-G solvation = -29556.701032 eV Core-core repulsion = 25391.399205 eV Total energy + Delta-G solvation = -4165.301827 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.76183 -39.06817 -38.26135 -37.42410 -35.11510 -33.89129 -33.38156 -32.23713 -31.35000 -31.08402 -30.94824 -28.41143 -26.74397 -24.69898 -23.67217 -23.44295 -22.63156 -20.94508 -20.03773 -19.53852 -19.02480 -17.90963 -17.64243 -17.09719 -16.22196 -16.09356 -15.92977 -15.42534 -15.08587 -14.99674 -14.83845 -14.59299 -14.18469 -13.95426 -13.89313 -13.77922 -13.48651 -13.24605 -12.75809 -12.67193 -12.60033 -12.50931 -12.25622 -12.03384 -11.88726 -11.81060 -11.60847 -11.48829 -11.45967 -11.39159 -11.10069 -10.95247 -10.65796 -10.51211 -10.36309 -10.24778 -9.88385 -9.72333 -9.54641 -8.87933 -8.49311 -8.07408 -7.98383 -6.44520 -3.85278 1.76415 2.42216 2.72742 3.14394 3.25221 3.32539 3.86471 3.87696 4.03753 4.13335 4.26625 4.30186 4.43842 4.57313 4.60610 4.76227 4.78843 4.80957 5.01381 5.04536 5.08221 5.11725 5.21367 5.24252 5.28210 5.35701 5.38460 5.50360 5.53522 5.55479 5.69852 5.70616 5.73781 5.83620 5.94209 5.97748 6.04275 6.13829 6.14720 6.26014 6.27539 6.37029 7.15736 7.19985 7.36391 7.53014 7.61994 7.99977 8.03997 8.58440 9.15487 9.51530 10.02920 10.73261 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024835 B = 0.001778 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.157890 B =15741.301019 C =16142.206713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.189 4.189 3 C 0.177 3.823 4 C -0.147 4.147 5 O -0.538 6.538 6 C -0.166 4.166 7 C 0.516 3.484 8 O -0.519 6.519 9 N -0.614 5.614 10 C 0.112 3.888 11 C -0.169 4.169 12 C 0.089 3.911 13 N -0.663 5.663 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.299 4.299 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C -0.121 4.121 27 C 0.112 3.888 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.116 0.884 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.369 0.631 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.350 0.650 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.066 0.934 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.116 -11.922 -22.543 26.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.207 4.207 3 C 0.135 3.865 4 C -0.204 4.204 5 O -0.343 6.343 6 C -0.206 4.206 7 C 0.304 3.696 8 O -0.395 6.395 9 N -0.349 5.349 10 C -0.012 4.012 11 C -0.209 4.209 12 C -0.022 4.022 13 N -0.294 5.294 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.428 4.428 19 H 0.121 0.879 20 C -0.180 4.180 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.159 4.159 27 C -0.010 4.010 28 H 0.123 0.877 29 H 0.118 0.882 30 H 0.134 0.866 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.216 0.784 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.097 0.903 42 H 0.170 0.830 43 H 0.061 0.939 44 H 0.104 0.896 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.103 0.897 48 H 0.085 0.915 49 H 0.085 0.915 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.859 -10.285 -23.535 26.584 hybrid contribution -0.361 -1.394 1.862 2.354 sum -7.221 -11.679 -21.673 25.656 Atomic orbital electron populations 1.23895 0.96052 1.02491 0.99135 1.23607 0.96774 0.98742 1.01623 1.19856 0.88017 0.84121 0.94456 1.21935 0.98867 1.04223 0.95357 1.86729 1.50068 1.48831 1.48659 1.22436 1.00449 0.97003 1.00687 1.20396 0.79062 0.88409 0.81707 1.90677 1.63810 1.49975 1.35021 1.48199 1.44151 1.19992 1.22509 1.21607 1.02107 0.91683 0.85818 1.22664 1.01716 0.99269 0.97257 1.21580 0.98985 0.91177 0.90435 1.60170 1.12521 1.55606 1.01069 1.21704 0.98700 0.96071 0.91698 1.19828 0.85553 0.87297 0.84797 1.90531 1.38584 1.32175 1.85416 1.41874 1.38198 1.32331 1.07673 1.19758 1.23049 1.14880 0.85146 0.87863 1.25267 0.96120 0.96833 0.99771 1.69616 1.26726 1.27840 1.30155 0.85799 0.78304 0.79222 0.81022 1.19205 1.20775 1.20724 1.21893 1.02939 0.98793 0.92306 1.21653 0.95685 0.84773 0.98923 0.87666 0.88164 0.86642 0.92174 0.91926 0.88788 0.78405 0.88670 0.88070 0.89944 0.91056 0.90433 0.91156 0.90350 0.83034 0.93941 0.89640 0.77487 0.91923 0.89682 0.91469 0.91527 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.06 13.93 29.01 0.40 -0.66 16 2 C -0.19 -1.19 8.77 -36.03 -0.32 -1.50 16 3 C 0.18 1.41 0.94 -91.77 -0.09 1.33 16 4 C -0.15 -1.31 8.50 37.16 0.32 -0.99 16 5 O -0.54 -5.27 10.84 -53.50 -0.58 -5.85 16 6 C -0.17 -1.14 3.28 -27.88 -0.09 -1.23 16 7 C 0.52 5.21 7.26 -10.99 -0.08 5.14 16 8 O -0.52 -7.09 12.37 -12.70 -0.16 -7.25 16 9 N -0.61 -5.56 2.98 -173.01 -0.52 -6.08 16 10 C 0.11 0.79 6.31 -3.94 -0.02 0.77 16 11 C -0.17 -1.51 5.31 -26.83 -0.14 -1.65 16 12 C 0.09 0.98 2.43 -67.67 -0.16 0.82 16 13 N -0.66 -10.09 5.87 -107.95 -0.63 -10.72 16 14 C 0.05 0.85 5.96 -4.98 -0.03 0.82 16 15 C 0.44 10.17 7.82 -10.99 -0.09 10.09 16 16 O -0.58 -15.70 15.78 5.54 0.09 -15.61 16 17 N -0.56 -14.06 5.29 -10.96 -0.06 -14.12 16 18 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 19 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.52 16 22 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 23 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 C -0.12 -1.29 5.69 -26.59 -0.15 -1.44 16 27 C 0.11 1.09 6.44 -3.69 -0.02 1.06 16 28 H 0.11 0.63 6.41 -52.49 -0.34 0.29 16 29 H 0.10 0.48 8.06 -52.49 -0.42 0.06 16 30 H 0.12 0.57 8.06 -52.48 -0.42 0.15 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.08 5.51 -51.93 -0.29 0.79 16 34 H 0.37 2.45 8.05 45.56 0.37 2.81 16 35 H 0.10 0.53 7.68 -51.93 -0.40 0.13 16 36 H 0.10 0.51 7.95 -51.93 -0.41 0.09 16 37 H 0.08 0.43 5.94 -51.92 -0.31 0.12 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.08 0.68 7.42 -51.93 -0.39 0.30 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.08 0.84 7.80 -51.93 -0.40 0.43 16 42 H 0.35 5.62 8.18 -39.29 -0.32 5.29 16 43 H 0.04 0.62 7.41 -51.93 -0.38 0.24 16 44 H 0.09 1.33 8.05 -51.93 -0.42 0.91 16 45 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 46 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 47 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.09 1.03 7.00 -51.93 -0.36 0.67 16 LS Contribution 398.78 15.07 6.01 6.01 Total: -1.00 -33.91 398.78 -8.16 -42.06 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: -7.29 Total: 14.63 kcal Atomic # 6 Polarization: 5.32 SS G_CDS: -0.72 Total: 4.60 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.48 Total: -54.45 kcal Atomic # 8 Polarization: -28.06 SS G_CDS: -0.65 Total: -28.71 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -33.91 -8.16 -42.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200324625.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.372 kcal (2) G-P(sol) polarization free energy of solvation -33.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds