Wall clock time and date at job start Tue Mar 31 2020 23:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50701 * 119.99826 * 2 1 4 4 C 1.53000 * 109.47550 * 240.27732 * 3 2 1 5 5 O 1.42896 * 109.47289 * 0.27807 * 3 2 1 6 6 C 1.53010 * 109.46881 * 120.27744 * 3 2 1 7 7 C 1.50701 * 109.46881 * 180.02562 * 6 3 2 8 8 O 1.21275 * 120.00114 * 0.02562 * 7 6 3 9 9 N 1.34779 * 119.99751 * 179.97438 * 7 6 3 10 10 C 1.46934 * 120.63021 * 0.02562 * 9 7 6 11 11 C 1.53189 * 108.77512 * 126.36341 * 10 9 7 12 12 C 1.53038 * 109.31455 * 54.63592 * 11 10 9 13 13 C 1.53044 * 109.53409 * 298.63321 * 12 11 10 14 14 H 1.08993 * 109.50097 * 301.37582 * 13 12 11 15 15 N 1.46901 * 109.49474 * 181.31496 * 13 12 11 16 16 C 1.46903 * 111.00197 * 84.99950 * 15 13 12 17 17 C 1.50697 * 109.47537 * 180.02562 * 16 15 13 18 18 O 1.21296 * 119.99892 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00260 * 180.02562 * 17 16 15 20 20 C 1.37098 * 120.00329 * 180.02562 * 19 17 16 21 21 H 1.08004 * 119.99785 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00308 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99775 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99968 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47327 * 59.99527 * 24 22 20 26 26 H 1.48501 * 109.46889 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46906 * 299.99501 * 24 22 20 28 28 C 1.46919 * 120.63122 * 179.72259 * 9 7 6 29 29 H 1.08002 * 120.00350 * 359.72370 * 1 2 3 30 30 H 1.07998 * 120.00195 * 179.72135 * 1 2 3 31 31 H 1.08002 * 120.00352 * 180.28242 * 2 1 3 32 32 H 1.08995 * 109.46922 * 59.99527 * 4 3 2 33 33 H 1.09000 * 109.47377 * 180.02562 * 4 3 2 34 34 H 1.09008 * 109.46583 * 299.99972 * 4 3 2 35 35 H 0.96703 * 114.00176 * 59.99804 * 5 3 2 36 36 H 1.09004 * 109.46811 * 299.99835 * 6 3 2 37 37 H 1.08996 * 109.46879 * 59.99757 * 6 3 2 38 38 H 1.08998 * 109.58336 * 246.15124 * 10 9 7 39 39 H 1.09001 * 109.58431 * 6.43244 * 10 9 7 40 40 H 1.08997 * 109.49579 * 174.58548 * 11 10 9 41 41 H 1.09001 * 109.49947 * 294.64788 * 11 10 9 42 42 H 1.08997 * 109.45952 * 58.64791 * 12 11 10 43 43 H 1.08994 * 109.46523 * 178.61178 * 12 11 10 44 44 H 1.00902 * 111.00097 * 208.95715 * 15 13 12 45 45 H 1.08995 * 109.46890 * 300.00451 * 16 15 13 46 46 H 1.09004 * 109.46789 * 59.99783 * 16 15 13 47 47 H 0.96998 * 120.00224 * 359.97438 * 19 17 16 48 48 H 0.97004 * 120.00305 * 180.02562 * 23 22 20 49 49 H 1.09002 * 109.58802 * 353.41620 * 28 9 7 50 50 H 1.08993 * 109.58961 * 113.84637 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9378 1.3893 -1.2527 5 8 1.1348 2.3912 0.0065 6 6 2.9483 1.3831 1.2458 7 6 3.7013 2.6885 1.2462 8 8 3.5452 3.4788 0.3396 9 7 4.5474 2.9781 2.2545 10 6 4.7465 2.0310 3.3601 11 6 6.2458 1.7527 3.5068 12 6 6.9928 3.0780 3.6724 13 6 6.7818 3.9433 2.4278 14 1 7.1408 3.4092 1.5481 15 7 7.5248 5.2021 2.5741 16 6 8.9215 5.0416 2.1482 17 6 9.6506 6.3501 2.3129 18 8 9.0642 7.3212 2.7424 19 7 10.9538 6.4418 1.9820 20 6 11.6172 7.6321 2.1323 21 1 11.0953 8.4966 2.5155 22 6 12.9610 7.7265 1.7916 23 7 13.5961 6.6746 1.3258 24 14 13.8650 9.3482 1.9971 25 1 13.8268 9.7589 3.4236 26 1 15.2770 9.1857 1.5668 27 1 13.2099 10.3889 1.1646 28 6 5.2931 4.2440 2.2658 29 1 -0.5401 0.9353 0.0045 30 1 -0.5400 -0.9353 -0.0045 31 1 1.8500 -0.9353 -0.0046 32 1 2.3075 1.3337 -2.1401 33 1 3.4831 2.3331 -1.2524 34 1 3.6462 0.5608 -1.2576 35 1 0.5467 2.4013 0.7741 36 1 2.3253 1.3232 2.1383 37 1 3.6565 0.5546 1.2408 38 1 4.3628 2.4626 4.2845 39 1 4.2195 1.1016 3.1443 40 1 6.4156 1.1274 4.3833 41 1 6.6091 1.2383 2.6171 42 1 6.6116 3.6028 4.5483 43 1 8.0571 2.8814 3.8017 44 1 7.0752 5.9486 2.0656 45 1 9.4025 4.2786 2.7601 46 1 8.9496 4.7388 1.1014 47 1 11.4227 5.6654 1.6381 48 1 14.5343 6.7403 1.0883 49 1 5.1289 4.7732 1.3271 50 1 4.9549 4.8599 3.0990 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207951726.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:38 Heat of formation + Delta-G solvation = -95.874612 kcal Electronic energy + Delta-G solvation = -29715.674647 eV Core-core repulsion = 25550.440521 eV Total energy + Delta-G solvation = -4165.234126 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.75410 -39.02777 -38.20584 -37.34580 -35.14513 -33.85128 -33.36725 -32.40153 -31.78639 -31.22683 -30.20621 -28.30755 -26.34494 -25.41159 -24.03990 -22.94126 -22.70920 -20.56098 -20.02808 -19.42039 -19.02526 -17.87926 -17.61905 -17.07892 -16.40700 -16.12197 -15.74917 -15.41085 -15.31509 -14.86691 -14.81517 -14.57469 -14.27687 -14.06026 -13.83222 -13.55357 -13.40465 -13.24341 -13.07842 -12.61079 -12.55382 -12.43117 -12.26424 -12.04804 -11.86849 -11.82002 -11.53796 -11.45105 -11.41326 -11.12208 -11.05438 -10.85223 -10.74532 -10.49670 -10.43251 -10.20339 -9.88681 -9.72737 -9.48996 -8.82918 -8.45387 -8.09575 -7.95181 -6.40652 -3.81483 1.75294 2.43598 2.69834 3.21267 3.26724 3.31381 3.86945 3.91754 4.07604 4.13241 4.26385 4.32553 4.51591 4.56522 4.67000 4.69640 4.78485 4.81223 4.89395 5.03780 5.07510 5.20321 5.24708 5.26299 5.26726 5.38592 5.41184 5.52939 5.58269 5.65781 5.71516 5.75068 5.79874 5.87765 5.96387 6.03300 6.05061 6.12653 6.19067 6.26381 6.30093 6.33435 7.15362 7.22541 7.36671 7.56074 7.62566 8.02207 8.07074 8.62221 9.18781 9.55163 10.06696 10.77014 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.024475 B = 0.001864 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.766828 B =15014.219580 C =15388.139220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.188 4.188 3 C 0.177 3.823 4 C -0.148 4.148 5 O -0.537 6.537 6 C -0.163 4.163 7 C 0.515 3.485 8 O -0.516 6.516 9 N -0.612 5.612 10 C 0.106 3.894 11 C -0.135 4.135 12 C -0.110 4.110 13 C 0.075 3.925 14 H 0.045 0.955 15 N -0.661 5.661 16 C 0.053 3.947 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.111 3.889 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.368 0.632 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.351 0.649 45 H 0.085 0.915 46 H 0.044 0.956 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.092 0.908 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.179 -19.741 1.496 29.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.206 4.206 3 C 0.135 3.865 4 C -0.205 4.205 5 O -0.342 6.342 6 C -0.204 4.204 7 C 0.302 3.698 8 O -0.391 6.391 9 N -0.347 5.347 10 C -0.017 4.017 11 C -0.174 4.174 12 C -0.148 4.148 13 C -0.036 4.036 14 H 0.062 0.938 15 N -0.294 5.294 16 C -0.080 4.080 17 C 0.226 3.774 18 O -0.467 6.467 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.012 4.012 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.079 0.921 33 H 0.113 0.887 34 H 0.081 0.919 35 H 0.215 0.785 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.172 0.828 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.110 0.890 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -22.008 -18.613 1.316 28.853 hybrid contribution 0.613 -0.204 -0.383 0.751 sum -21.395 -18.817 0.933 28.508 Atomic orbital electron populations 1.23884 0.96041 1.02449 0.99314 1.23611 0.96763 0.98752 1.01465 1.19871 0.87978 0.84095 0.94550 1.21946 0.98917 1.04363 0.95274 1.86752 1.50226 1.48789 1.48407 1.22423 1.00338 0.96946 1.00667 1.20424 0.79464 0.88445 0.81434 1.90701 1.63833 1.49748 1.34812 1.48101 1.43405 1.19843 1.23305 1.21795 0.97150 0.92807 0.89959 1.21941 0.94487 0.98371 1.02590 1.21549 1.00844 0.94114 0.98305 1.21742 0.92690 0.91813 0.97343 0.93751 1.60096 1.01459 1.05328 1.62544 1.21708 0.89637 0.98028 0.98642 1.19785 0.83251 0.89570 0.84767 1.90526 1.67211 1.38742 1.50193 1.41849 1.08233 1.12982 1.56938 1.19663 0.92658 0.89951 1.40675 0.87953 1.25262 0.96745 0.98943 0.96986 1.69604 1.11415 1.29405 1.43931 0.85909 0.77936 0.81406 0.78912 1.19888 1.20991 1.19909 1.21612 0.90279 0.85308 1.03962 0.87679 0.88192 0.86625 0.92112 0.88731 0.91870 0.78544 0.88725 0.88003 0.91030 0.89954 0.90355 0.91582 0.90831 0.91334 0.82841 0.89640 0.93848 0.77479 0.91835 0.88989 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.01 13.93 29.02 0.40 -0.61 16 2 C -0.19 -1.15 8.77 -36.02 -0.32 -1.47 16 3 C 0.18 1.44 0.94 -91.77 -0.09 1.35 16 4 C -0.15 -1.43 8.50 37.16 0.32 -1.12 16 5 O -0.54 -5.28 10.84 -53.51 -0.58 -5.86 16 6 C -0.16 -1.12 3.28 -27.88 -0.09 -1.21 16 7 C 0.51 5.49 7.26 -10.98 -0.08 5.41 16 8 O -0.52 -7.59 12.37 -12.72 -0.16 -7.75 16 9 N -0.61 -5.95 2.98 -173.05 -0.52 -6.47 16 10 C 0.11 0.70 6.35 -3.71 -0.02 0.68 16 11 C -0.14 -0.99 6.08 -26.61 -0.16 -1.15 16 12 C -0.11 -1.16 5.40 -26.69 -0.14 -1.30 16 13 C 0.08 0.94 2.63 -67.83 -0.18 0.76 16 14 H 0.04 0.58 7.80 -51.93 -0.41 0.18 16 15 N -0.66 -10.67 5.94 -108.11 -0.64 -11.31 16 16 C 0.05 0.94 5.97 -4.98 -0.03 0.91 16 17 C 0.44 10.51 7.82 -10.99 -0.09 10.43 16 18 O -0.58 -15.97 15.78 5.54 0.09 -15.88 16 19 N -0.56 -14.42 5.29 -10.96 -0.06 -14.48 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 24 Si 0.93 21.23 29.55 -169.99 -5.02 16.21 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.11 1.31 5.67 -3.95 -0.02 1.29 16 29 H 0.11 0.59 6.41 -52.49 -0.34 0.26 16 30 H 0.10 0.44 8.06 -52.49 -0.42 0.02 16 31 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.09 1.20 5.51 -51.93 -0.29 0.91 16 34 H 0.06 0.49 8.14 -51.92 -0.42 0.06 16 35 H 0.37 2.29 8.06 45.56 0.37 2.66 16 36 H 0.09 0.46 7.94 -51.93 -0.41 0.04 16 37 H 0.10 0.51 7.69 -51.93 -0.40 0.11 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.35 5.93 -51.93 -0.31 0.04 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.78 7.43 -51.93 -0.39 0.39 16 44 H 0.35 5.97 8.06 -39.29 -0.32 5.65 16 45 H 0.09 1.40 7.42 -51.93 -0.39 1.01 16 46 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 47 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 50 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 398.68 15.07 6.01 6.01 Total: -1.00 -34.48 398.68 -8.18 -42.66 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -7.29 Total: 14.95 kcal Atomic # 6 Polarization: 6.61 SS G_CDS: -0.74 Total: 5.87 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: -0.49 Total: -56.22 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.65 Total: -29.49 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.48 -8.18 -42.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207951726.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.211 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds